BAC Information

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BAC

Clone NameB6Ng01-273A10
Chromosome16 (Build37)
Map Location 39,983,540 - 40,126,620
singlet/doubletdoublet
Overlap genenone
Upstream geneIgsf11, LOC667400
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273A10.bB6Ng01-273A10.g
ACCGA074701GA074702
length1,021991
definitionB6Ng01-273A10.b B6Ng01-273A10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,125,603 - 40,126,620)(39,983,540 - 39,984,527)
sequence
gaattcctcttggattagcagatggcagtgcagcaaatggactagaggtg
gtgaaggctagacatatagaaagagttattaattgaaatctatttattgg
ttctggagatgaaatgacagacagaaatacacaaagatccaccccccttg
aaaaaagacattattagagactgaataagttcaaaaagtgggggtgggga
ggaagctctgaggagagattttacattctgtgattgtcgcaaggaatcct
ttccatttgactcatgactgctaaaattctcaacatgttttgttttgttt
tgttttgttttgtttgttttgttttgtcttgttttgttcttcccctctaa
gtgcccagacttagaatgtctacaaataattaccaaatctttacctgcag
tgaagtccggttgactcctgaattacccaacaccattatttagcctattg
tcctcctttcacgttttactttgctttatgctcttatttgttgtcatccc
tggatctgtagctgaggccccacacaggctactcaaatactctatcctaa
ccccaccctgccttcttactgtcagttataagaggacttctaccaatatt
gacaggtattcctgaggattaaacagcatcagatgatatgttcctgagac
ttcaagagacacatcaaggataccctcctttgtcctgtcatctctggcga
acagaaacatgagaatctgcagcaaaggcagagaaaagcaagcaaagtca
gcgcagtaagagacggaaactgtcaccgctcttatccgcatgggctttct
gcttgatttgttttaatagggaccatgccacattttcggtccagggataa
aatttaaatgcacagttgaaaaatagctttattgttagaaaaccagttgt
agtaacttggcccagtggttaaaataattatttttgaaaaacttgtatat
atgagtatgtatgttgtgggttttatttgttcaggcttcttagaattaaa
ggcttaaggggcaccatttaa

gaattcaacgggtacaatgtgctactagtgtcaaggtcagaaatatggca
gagacattacctgcagatctgaaagaaaccacagacaccatgatcacata
attcaaatattaaattgcatcactgaataaaatgaaatagttttgttagg
gtctccatccagcaaaattcccaggaagagatggaaaatccacctttgct
gcatccttgtgacttagaggagttctgactggcctctgctctcactagca
tgtgttcctgagtcattcattgagttggacatgtttggtaccccgctgag
aatttttctctgaatgtttagaagaaggtaggatgggtaggtttttcatg
ttggagttttctctctaaataacttcaaactagaggtgttaaagcaagaa
ggcagatgatgtaaacaagagaggccaagaagctgagctatgatagatag
ggtcagccatgtcaaaactggtttgacctagtgcttcaaaaccatacata
aaggattgggaatgctgtgtaatgtggaatggcattggataggatgaggc
ttcagatggccactagaatctcaaggtggaggtcactgtgacatttggag
gaggctttcaagcaatccttggctaagaagggagaggccagagagaaagg
gaaccacgggataagaagatgaacagtgagttccaagatttttctcccgc
gaaggggaaagtcaaatgtatgttgcgacaaggtcaaatcaaggtcttaa
gaagacaagggcttttcacctatgtttgctgagatgaaaggggactttgg
ctgcattggaccgacctctcacacacaagcaaacccagggccgcggcgct
gccaggctgtgcgcactagatggcagtagcggggccctttcggctgggct
cccgggtcctataaggcgcttgcttgtttaagtacagtctcatttagttg
gagctgcaggggagtaagggagagggaggggtaggaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_40125603_40126620
seq2: B6Ng01-273A10.b_49_1069 (reverse)

seq1  TTAAATGGTG-CCCTTAAGCC-TTAATTCTAAGA--GCTGAACAAATAAA  46
      |||||||||| |||||||||| ||||||||||||   |||||||||||||
seq2  TTAAATGGTGCCCCTTAAGCCTTTAATTCTAAGAAGCCTGAACAAATAAA  50

seq1  ACCAACAACATACATACTCATATATACAAGTTTTTTCAAAAATAATTATT  96
      ||| |||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACCCACAACATACATACTCATATATACAAG-TTTTTCAAAAATAATTATT  99

seq1  TTAACCACTGGGCCAAGTTACTACAACTGGTTTTCTAACAATAAAGCTAT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCACTGGGCCAAGTTACTACAACTGGTTTTCTAACAATAAAGCTAT  149

seq1  TTTTCAACTGTGCATTTAAATTTTATCCCTGGACCGAAAATGTGGCATGG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACTGTGCATTTAAATTTTATCCCTGGACCGAAAATGTGGCATGG  199

seq1  TCCCTATTAAAACAAATCAAGCAGAAAGCCCATGCGGATAAGAGCGGTGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATTAAAACAAATCAAGCAGAAAGCCCATGCGGATAAGAGCGGTGA  249

seq1  CAGTTTCCGTCTCTTACTGCGCTGACTTTGCTTGCTTTTCTCTGCCTTTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCGTCTCTTACTGCGCTGACTTTGCTTGCTTTTCTCTGCCTTTG  299

seq1  CTGCAGATTCTCATGTTTCTGTTCGCCAGAGATGACAGGACAAAGGAGGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGATTCTCATGTTTCTGTTCGCCAGAGATGACAGGACAAAGGAGGG  349

seq1  TATCCTTGATGTGTCTCTTGAAGTCTCAGGAACATATCATCTGATGCTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTGATGTGTCTCTTGAAGTCTCAGGAACATATCATCTGATGCTGT  399

seq1  TTAATCCTCAGGAATACCTGTCAATATTGGTAGAAGTCCTCTTATAACTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCTCAGGAATACCTGTCAATATTGGTAGAAGTCCTCTTATAACTG  449

seq1  ACAGTAAGAAGGCAGGGTGGGGTTAGGATAGAGTATTTGAGTAGCCTGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAGAAGGCAGGGTGGGGTTAGGATAGAGTATTTGAGTAGCCTGTG  499

seq1  TGGGGCCTCAGCTACAGATCCAGGGATGACAACAAATAAGAGCATAAAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCTCAGCTACAGATCCAGGGATGACAACAAATAAGAGCATAAAGC  549

seq1  AAAGTAAAACGTGAAAGGAGGACAATAGGCTAAATAATGGTGTTGGGTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAACGTGAAAGGAGGACAATAGGCTAAATAATGGTGTTGGGTAA  599

seq1  TTCAGGAGTCAACCGGACTTCACTGCAGGTAAAGATTTGGTAATTATTTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAGTCAACCGGACTTCACTGCAGGTAAAGATTTGGTAATTATTTG  649

seq1  TAGACATTCTAAGTCTGGGCACTTAGAGGGGAAGAACAAAACAAGACAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATTCTAAGTCTGGGCACTTAGAGGGGAAGAACAAAACAAGACAAA  699

seq1  ACAAAACAAACAAAACAAAACAAAACAAAACAAAACATGTTGAGAATTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAACAAAACAAAACAAAACAAAACAAAACATGTTGAGAATTTT  749

seq1  AGCAGTCATGAGTCAAATGGAAAGGATTCCTTGCGACAATCACAGAATGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCATGAGTCAAATGGAAAGGATTCCTTGCGACAATCACAGAATGT  799

seq1  AAAATCTCTCCTCAGAGCTTCCTCCCCACCCCCACTTTTTGAACTTATTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTCTCCTCAGAGCTTCCTCCCCACCCCCACTTTTTGAACTTATTC  849

seq1  AGTCTCTAATAATGTCTTTTTTCAAGGGGGGTGGATCTTTGTGTATTTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTAATAATGTCTTTTTTCAAGGGGGGTGGATCTTTGTGTATTTCT  899

seq1  GTCTGTCATTTCATCTCCAGAACCAATAAATAGATTTCAATTAATAACTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCATTTCATCTCCAGAACCAATAAATAGATTTCAATTAATAACTC  949

seq1  TTTCTATATGTCTAGCCTTCACCACCTCTAGTCCATTTGCTGCACTGCCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATATGTCTAGCCTTCACCACCTCTAGTCCATTTGCTGCACTGCCA  999

seq1  TCTGCTAATCCAAGAGGAATTC  1018
      ||||||||||||||||||||||
seq2  TCTGCTAATCCAAGAGGAATTC  1021


seq1: chr16_39983540_39984527
seq2: B6Ng01-273A10.g_68_1058

seq1  GAATTCAACGGGTACAATGTGCTACTAGTGTCAAGGTCAGAAATATGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACGGGTACAATGTGCTACTAGTGTCAAGGTCAGAAATATGGCA  50

seq1  GAGACATTACCTGCAGATCTGAAAGAAACCACAGACACCATGATCACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATTACCTGCAGATCTGAAAGAAACCACAGACACCATGATCACATA  100

seq1  ATTCAAATATTAAATTGCATCACTGAATAAAATGAAATAGTTTTGTTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATATTAAATTGCATCACTGAATAAAATGAAATAGTTTTGTTAGG  150

seq1  GTCTCCATCCAGCAAAATTCCCAGGAAGAGATGGAAAATCCACCTTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATCCAGCAAAATTCCCAGGAAGAGATGGAAAATCCACCTTTGCT  200

seq1  GCATCCTTGTGACTTAGAGGAGTTCTGACTGGCCTCTGCTCTCACTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTTGTGACTTAGAGGAGTTCTGACTGGCCTCTGCTCTCACTAGCA  250

seq1  TGTGTTCCTGAGTCATTCATTGAGTTGGACATGTTTGGTACCCCGCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCCTGAGTCATTCATTGAGTTGGACATGTTTGGTACCCCGCTGAG  300

seq1  AATTTTTCTCTGAATGTTTAGAAGAAGGTAGGATGGGTAGGTTTTTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTCTGAATGTTTAGAAGAAGGTAGGATGGGTAGGTTTTTCATG  350

seq1  TTGGAGTTTTCTCTCTAAATAACTTCAAACTAGAGGTGTTAAAGCAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTTTCTCTCTAAATAACTTCAAACTAGAGGTGTTAAAGCAAGAA  400

seq1  GGCAGATGATGTAAACAAGAGAGGCCAAGAAGCTGAGCTATGATAGATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGATGTAAACAAGAGAGGCCAAGAAGCTGAGCTATGATAGATAG  450

seq1  GGTCAGCCATGTCAAAACTGGTTTGACCTAGTGCTTCAAAACCATACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCCATGTCAAAACTGGTTTGACCTAGTGCTTCAAAACCATACATA  500

seq1  AAGGATTGGGAATGCTGTGTAATGTGGAATGGCATTGGATAGGATGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTGGGAATGCTGTGTAATGTGGAATGGCATTGGATAGGATGAGGC  550

seq1  TTCAGATGGCCACTAGAATCTCAAGGTGGAGGTCACTGTGACATTTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGGCCACTAGAATCTCAAGGTGGAGGTCACTGTGACATTTGGAG  600

seq1  GAGGCTTTCAAGCAATCCTTGGCTAAGAAGGGAGAGGCCAGAGAGAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTTCAAGCAATCCTTGGCTAAGAAGGGAGAGGCCAGAGAGAAAGG  650

seq1  GAACCACGGGATAAGAAGATGAACAGTGAGTTCCAAGATTTTTCTCCCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACGGGATAAGAAGATGAACAGTGAGTTCCAAGATTTTTCTCCCGC  700

seq1  GAAGGGGAAAGTCAAATGTATGTTGCGACAAGGTCAAATCAAGGTCTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGAAAGTCAAATGTATGTTGCGACAAGGTCAAATCAAGGTCTTAA  750

seq1  GAAGACAAGGGCTTTTCACCTATGTTTGCTGAGATGAAAGGGGACTTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAAGGGCTTTTCACCTATGTTTGCTGAGATGAAAGGGGACTTTGG  800

seq1  CTGCATTGGACCGACCTCTCACACACAAGCAAACCCAGGGCCGCGGCGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTGGACCGACCTCTCACACACAAGCAAACCCAGGGCCGCGGCGCT  850

seq1  GCCAGGCTGTGCGCACTAGATGGCAGTAGCGGGGCCCTTTCGGCTGGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCTGTGCGCACTAGATGGCAGTAGCGGGGCCCTTTCGGCTGGGCT  900

seq1  -CCGGGTCCTATAAGGCGCTTGCTTGTTTAAGTACAGTCTCATTTAGTTG  949
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGTCCTATAAGGCGCTTGCTTGTTTAAGTACAGTCTCATTTAGTTG  950

seq1  GAGCTGCAGGGGAGTAAGGGAGAGG--AGGGTAGGAAAGAA  988
      |||||||||||||||||||||||||   |||||||||| ||
seq2  GAGCTGCAGGGGAGTAAGGGAGAGGGAGGGGTAGGAAAAAA  991


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