BAC Information

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BAC

Clone NameB6Ng01-273G15
Chromosome16 (Build37)
Map Location 27,285,480 - 27,286,647
singlet/doubletsinglet
Overlap genenone
Upstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
Downstream geneOstn, Uts2d, Ccdc50, Fgf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273G15.bB6Ng01-273G15.g
ACCGA074993GA074994
length1,1771,163
definitionB6Ng01-273G15.b B6Ng01-273G15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcttgtcaaaggaactgaggggaaaggagtatagcaaagactg
aagaaaaggccatccagatgctgccccacctagggatctatcccatatgc
ctactccaaaccctggcactattgctgatgccaacaagtgcttgctgaca
ggaacctggtatagctgtccctttagaggctctgccagagcctgaccaat
attgaagcagatgcaagcagacaaaagttggactgagtgctgggactgca
atggacgagttagggggaggactgaacgacctgaaggtgtttgcaacccc
gtgaagagtaacaatatcgactaactagatcccacagagatccaaagaac
taaacaaccaaccaaagaatacacatgagggccccatggctgtagctgga
tatgcaacagaggctggccttatctggcatcagtggaagggaagcccctt
ggtcctctggaggctcaatgacccagggtaagggaatactatggtgttaa
gccagcaacgggagagtggagggggtgtaccttcatagaggtgggggagg
ggcactcactgataagtggatattagcccagaaacctagaatacccaaga
tacaacttctaaaacacaagaaaatcaagaaggaagaccaactcttggat
acttcattcctccctagaatatggaataaaatatctatggaaggagttgc
agagacaaagcttggagctaagacaaaaggatggaccatccagagactgc
cccacgggggtccatcccataatcagccaccaaatgcagacactattgca
tatgccagcaaaattttgctgaaaggaccctgatgtagctgtctcctgtg
aggctatgccagtgcctggcaaatacagaagtggatgctcacagtcagct
attggatggatcacagggccccaatggaggagctagagaaagtacccaga
agctgaaggggtctgcaactctataaggtggaacaacaatatgaattcat
cagtacccctccagaactcgttgtcctcttagctgcattatgtaacagaa
gattgccttagtttgtcctttcatttggaagagagcccttggtctagcaa
ccttttatatactctatatcagggtaagcccatggcaaaaattgtgatgc
tagacgtggtataggggacacggttac
gaattccaagtgcataatatgatggatggatcactggaaatgggatatgt
tagttacatgtatcttttgttgggtgtatgggttaggacaatgtcttgct
agttagtgttagactgattagtctggagctcaccatgtaaatgatatcat
tcccaaactttctgagcttacaggtaccctttccttgtcaatcatctttt
ttttttttttacaaagatttgaatgccccccaaagagggaaaatgcaaaa
agaaatatctgaattttgacacctctctttgaggtatttgtggtacacag
catatggataattcataggagaagtaagatccgtagacagagaccaacac
tttctgaataattggtcagaataaaatctatgaaggataccttactattt
acaggcagttttgcaacagcacagatgccatatcttctgcatcaggcacg
aggaaattggacatggctactaggaaccttgactactgcaatctcagcag
caaactttatttacttagaggagagattggagagggagacagatgactca
tcttcactaaaagaaattatactattctgggaatgtgtactacaattctt
tgtgaaaactacgaacgaggttagtagtgtttgaggaactctggaaatat
tcagaagactgtatgaggatagaacagagagcctgggtgtatccttgtga
tatagcactaccattccccactgaaaatttctttcaagtgaattatattc
tagaaactagaacatagaagccatgtttatagcttaccttcaatatttta
aaattaatctcctatcatcagattggattgcaagaaagtagtaaggggat
gtctcaaaaatttaaccttctctcagaaaaaaatggactacatttcagtt
gaaaccactaagaaattcataaacatatttgtgtgttctctgtaaatttg
ttcctctacaaagtttacatatcaaacttggcagattttgaatctgcaaa
tagaccctttgtgagtgttgtgaaaccttggggttggaacacaggaagtg
ctgcaggtggagtataaacttcagctacggagggtacaggagtgatcaca
cagaggggtggagggtaagtcagcctctttaggcttactgaataattatc
atggaagaaaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_27285480_27286647
seq2: B6Ng01-273G15.g_64_1226 (reverse)

seq1  ACCTTTCTTCATTTAATAATTATTAAAGATAAAGCATAAAAGAGCTGGCC  50
      ||||||||||   | |||||||||    |  |||| | ||||||   | |
seq2  ACCTTTCTTC-CATGATAATTATT---CAGTAAGCCT-AAAGAGGCTGAC  45

seq1  TTACCCCTCCA-CCCTCTGTGTGTTCACTCCTGTACCCTCTGTAGCTGAA  99
      ||| ||||||| ||||||||||| |||||||||||||||| |||||||||
seq2  TTA-CCCTCCACCCCTCTGTGTGATCACTCCTGTACCCTCCGTAGCTGAA  94

seq1  GGTTTATACTCCACCTGCCAGCACTATCCCTGTGTTCCAACCC--AAGTT  147
       |||||||||||||||| ||||||  | |||||||||||||||  | |||
seq2  -GTTTATACTCCACCTG-CAGCAC--TTCCTGTGTTCCAACCCCAAGGTT  140

seq1  TCACAACACTCACAAAGGGTCTATGTGCAGATTCAAAATCTGCC-AGGTT  196
      |||||||||||||||||||||||| ||||||||||||||||||| || ||
seq2  TCACAACACTCACAAAGGGTCTATTTGCAGATTCAAAATCTGCCAAGTTT  190

seq1  GATATTGTAAACTTTGTAGA-GAACAAATTTACAGAGAACACACAAATAT  245
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  GATA-TGTAAACTTTGTAGAGGAACAAATTTACAGAGAACACACAAATAT  239

seq1  GTTTTATGAATTTCTTAGTGGTTTCAACTGAAATGTAGTCCATTTTTTTC  295
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TTTATGAATTTCTTAGTGGTTTCAACTGAAATGTAGTCCATTTTTTTC  288

seq1  TGAGAGAAGGTTAAATTTTTGAGACATCCCCTTACTAC-TTCTTGCAATC  344
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGAGAGAAGGTTAAATTTTTGAGACATCCCCTTACTACTTTCTTGCAATC  338

seq1  CAATCTGATGATAGGAGATTAATTTTAAAATATTGAAGGTAAGCTATAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGATGATAGGAGATTAATTTTAAAATATTGAAGGTAAGCTATAAA  388

seq1  CATGGCTTCTATGTTCTAGTTTCTAGAATATAATTCACTTGAAAGAAATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTTCTATGTTCTAGTTTCTAGAATATAATTCACTTGAAAGAAATT  438

seq1  TTCAGTGGGGAATGGTAGTGCTATATCACAAGGATACA-CCAGGCTCTCT  493
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTCAGTGGGGAATGGTAGTGCTATATCACAAGGATACACCCAGGCTCTCT  488

seq1  GTTCTATCCTCATACAGTCTTCTGAATATTTCCAGAGTTCCTCAAACACT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATCCTCATACAGTCTTCTGAATATTTCCAGAGTTCCTCAAACACT  538

seq1  ACTAACCTCGTTCGTAGTTTTCACAAAGAATTGTAGTACACATTCCCAGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCTCGTTCGTAGTTTTCACAAAGAATTGTAGTACACATTCCCAGA  588

seq1  ATAGTATAATTTCTTTTAGTGAAGATGAGTCATCTGTCTCCCTCTCCAAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATAATTTCTTTTAGTGAAGATGAGTCATCTGTCTCCCTCTCCAAT  638

seq1  CTCTCCTCTAAGTAAATAAAGTTTGCTGCTGAGATTGCAGTAGTCAAGGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCTAAGTAAATAAAGTTTGCTGCTGAGATTGCAGTAGTCAAGGT  688

seq1  TCCTAGTAGCCATGTCCAATTTCCTCGTGCCTGATGCAGAAGATATGGCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTAGCCATGTCCAATTTCCTCGTGCCTGATGCAGAAGATATGGCA  738

seq1  TCTGTGCTGTTGCAAAACTGCCTGTAAATAGTAAGGTATCCTTCATAGAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTGTTGCAAAACTGCCTGTAAATAGTAAGGTATCCTTCATAGAT  788

seq1  TTTATTCTGACCAATTATTCAGAAAGTGTTGGTCTCTGTCTACGGATCTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTGACCAATTATTCAGAAAGTGTTGGTCTCTGTCTACGGATCTT  838

seq1  ACTTCTCCTATGAATTATCCATATGCTGTGTACCACAAATACCTCAAAGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCCTATGAATTATCCATATGCTGTGTACCACAAATACCTCAAAGA  888

seq1  GAGGTGTCAAAATTCAGATATTTCTTTTTGCATTTTCCCTCTTTGGGGGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTCAAAATTCAGATATTTCTTTTTGCATTTTCCCTCTTTGGGGGG  938

seq1  CATTCAAATCTTTGTAAAAAAAAAAAAAAGATGATTGACAAGGAAAGGGT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAATCTTTGTAAAAAAAAAAAAAAGATGATTGACAAGGAAAGGGT  988

seq1  ACCTGTAAGCTCAGAAAGTTTGGGAATGATATCATTTACATGGTGAGCTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAAGCTCAGAAAGTTTGGGAATGATATCATTTACATGGTGAGCTC  1038

seq1  CAGACTACTCAGTCCTACACTAACTAGCAAGACATTGTCCTAACCCATAC  1093
      ||||||| ||||||  ||||||||||||||||||||||||||||||||||
seq2  CAGACTAATCAGTCTAACACTAACTAGCAAGACATTGTCCTAACCCATAC  1088

seq1  ACCCAACAAAAGATACATGTAACTAACATATCCCATTTCCAGTGATCCAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACAAAAGATACATGTAACTAACATATCCCATTTCCAGTGATCCAT  1138

seq1  CCATCATATTCTGCACTTGGAATTC  1168
      |||||||||| ||||||||||||||
seq2  CCATCATATTATGCACTTGGAATTC  1163