BAC Information

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BAC

Clone NameB6Ng01-273H13
Chromosome16 (Build37)
Map Location 52,294,799 - 52,418,758
singlet/doubletdoublet
Overlap geneAlcam
Upstream geneLOC627543, Cblb
Downstream geneLOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273H13.bB6Ng01-273H13.g
ACCGA075035GA075036
length1,2011,163
definitionB6Ng01-273H13.b B6Ng01-273H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,417,562 - 52,418,758)(52,294,799 - 52,295,985)
sequence
gaattcatcacacgtgactgccgatgtaaatcctgtttttaaagtgtctc
taacttgtcttctaaaagggaagcactagaataatgaggttaaaggtgtg
actcttgcttttaatactaaaatacaaccattaccgggtatctattttta
catgagatttcattttcgtgcatggggtgttttgtgtattagctaccagc
agtggaagaatttacatgtccagaaagcctttgaagttaattctctgttt
agaaacagctgagaggttgcctatggtacaatgcacttcttgaatctgca
gtcaggcaaatgtgcttctttcggtcagcctgcactcgattctatagatg
aaaacaaaacaaaaacaacatcatcaacaacaaaaactagttaaagacag
atcacactcattccatgaagccaagtgtcctgaggcagcatgccatggtg
gtgaggaactgaattgtgtttcgcaagtctgtggttctatttggtttgct
ttcctaagtgaattcagtgcctcgcagctcatcctcttcacaatgtgaca
gggagctgacattaggaggctaacatcagaatacaaatgaggcgctgaaa
gttgtgattttaacaaataaactcatgacaaaacccaataatattcccta
ttccaactaaagtaatgtctgctttcttagttaccgaggtgttcatacta
ggaagcaagagctgcttgccacaaatggcactttccctggttctgtgttt
tgaacagcaaaggatagactgtttttgtttttcctttctcatttaccatt
tatctatctattcggaatattcttcttactaataaatatctcctttattg
atttctctaccttggtttccttggaaaattgatacttcctaccttttatt
cagatcaaattccagagcatgcagtgggtctctgagttttgtaattatta
gagagattattataatgtattttatatacgaaacaaatactttcctcatt
tttcttctgaagggggcacatgtgaccttacagtttaaaggtggtgttcc
ttatttgaactcttggaaactacagcggatatcagagccactgagttaaa
aacacaacagcccacaacacaaccaaccacccacacattggtgttaactc
agccatgaactctgagatctcattcaaggttgaagtggctgtgttatttt
c

gaattcctataaaacacatggcaataagctatggctggagagtgttggaa
gtaatcgtttaagttagaggtcaaatctataagaaacatagcacaccata
gagaaccaaacacatatttgtaaatgagatagcaggaaatggagtctatt
cttaagtcatgagcagtttttttctatagattttccaaggaagaaaagat
tatttgtgtatcagagttttgtgataaggattggcagcagaatattaaga
gaaactgaatgaggcttgtggagatttaaggtatttgaatattatttcta
atacattaaatctatacaattataatttgggtacttacagtaaatatcaa
agatttcttgttcggaataaattgttttctggccggagggtccataatat
gtcacagaacaggtgaatggcatttgtatgtcagatctggttgtcttgta
ctccaaggaggaagtcacggtatacaactgagttcctggatcaatttcct
ttttaaaaagtatggccacctctaaagaaagtaaagaacatcaatgataa
tatctttcactggaaaatcacaatccataattaaatatcaacacccttga
gatatgagtttgtccttctaattgtatttaggaggagagaaagttgaaac
tcagtgaggtaagatgtcattcaagacagtgaatcagagacataggcaaa
aatagaatcctggaatcccatctcccacttaatttaattaacttccagaa
catgccatatatagaaatactccattctgcttttgactcttctacacaaa
gggataaaatggtgtccaaaaaaattgcccaataagttaaagggcactta
atttaactgaaacatagacttgtaaatagagacatgggcagctggtttga
ttctggacagttgatatgatgactagcctatataatatcatagaggccac
aggaagtcactgcctgcctcagactcactccttccaacaggtgcagcact
tgccatcctgtacaatgtgatgtgcatctggttaactgtctctgaatgca
gtcacctaactgaaaatgtaagaaatttctcacgtcaaataggttccatc
gtaattcaacatgcaagctcaatctagcaaatgaagtcttcacagtactc
ccaactcttagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_52417562_52418758
seq2: B6Ng01-273H13.b_44_1244 (reverse)

seq1  GAAAAT-ACACAG---CATCAA-CTTGAATGAGA-CTCAGAAGTCATGGC  44
      |||||| ||||||   | |||| ||||||||||| ||||||  |||||||
seq2  GAAAATAACACAGCCACTTCAACCTTGAATGAGATCTCAGAGTTCATGGC  50

seq1  TGGGAAGTTTACAC--ATGTTGTGGGTGGTTTGTTGTTGTTGT-GGCTGT  91
      ||   |||| ||||  ||| ||||||||||| |||| |||||| ||||||
seq2  TG---AGTTAACACCAATG-TGTGGGTGGTTGGTTG-TGTTGTGGGCTGT  95

seq1  TGTTGTTTTTTAACTCAGTGGCTCTGATAT-CGCTGTGGTTTCCAGGAGT  140
      |||   |||||||||||||||||||||||| |||||| ||||||| ||||
seq2  TGT--GTTTTTAACTCAGTGGCTCTGATATCCGCTGTAGTTTCCAAGAGT  143

seq1  TC-AATAAGGAACACCAACTTTAAACTGTAAGGTCACATTGTGCCCCCTT  189
      || |||||||||||||| |||||||||||||||||||| ||||||||| |
seq2  TCAAATAAGGAACACCACCTTTAAACTGTAAGGTCACA-TGTGCCCCC-T  191

seq1  TCAG-AGAAAAATGAGG-AAGTATTTGTTTCGTATATAAAATACATTATA  237
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCAGAAGAAAAATGAGGAAAGTATTTGTTTCGTATATAAAATACATTATA  241

seq1  ATAATCTCTCTAATAATTACAAAACTCAGAGACCCACTGCATGCTCTGGA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTCTCTAATAATTACAAAACTCAGAGACCCACTGCATGCTCTGGA  291

seq1  ATTTGATCTGAATAAAAGGTAGGAAGTATCAATTTTCCAAGGAAACCAAG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATCTGAATAAAAGGTAGGAAGTATCAATTTTCCAAGGAAACCAAG  341

seq1  GTAGAGAAATCAATAAAGGAGATATTTATTAGTAAGAAGAATATTCCGAA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAAATCAATAAAGGAGATATTTATTAGTAAGAAGAATATTCCGAA  391

seq1  TAGATAGATAAATGGTAAATGAGAAAGGAAAAACAAAAACAGTCTATCCT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAAATGGTAAATGAGAAAGGAAAAACAAAAACAGTCTATCCT  441

seq1  TTGCTGTTCAAAACACAGAACCAGGGAAAGTGCCATTTGTGGCAAGCAGC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTTCAAAACACAGAACCAGGGAAAGTGCCATTTGTGGCAAGCAGC  491

seq1  TCTTGCTTCCTAGTATGAACACCTCGGTAACTAAGAAAGCAGACATTACT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTCCTAGTATGAACACCTCGGTAACTAAGAAAGCAGACATTACT  541

seq1  TTAGTTGGAATAGGGAATATTATTGGGTTTTGTCATGAGTTTATTTGTTA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGGAATAGGGAATATTATTGGGTTTTGTCATGAGTTTATTTGTTA  591

seq1  AAATCACAACTTTCAGCGCCTCATTTGTATTCTGATGTTAGCCTCCTAAT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACAACTTTCAGCGCCTCATTTGTATTCTGATGTTAGCCTCCTAAT  641

seq1  GTCAGCTCCCTGTCACATTGTGAAGAGGATGAGCTGCGAGGCACTGAATT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTCCCTGTCACATTGTGAAGAGGATGAGCTGCGAGGCACTGAATT  691

seq1  CACTTAGGAAAGCAAACCAAATAGAACCACAGACTTGCGAAACACAATTC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGGAAAGCAAACCAAATAGAACCACAGACTTGCGAAACACAATTC  741

seq1  AGTTCCTCACCACCATGGCATGCTGCCTCAGGACACTTGGCTTCATGGAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTCACCACCATGGCATGCTGCCTCAGGACACTTGGCTTCATGGAA  791

seq1  TGAGTGTGATCTGTCTTTAACTAGTTTTTGTTGTTGATGATGTTGTTTTT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGATCTGTCTTTAACTAGTTTTTGTTGTTGATGATGTTGTTTTT  841

seq1  GTTTTGTTTTCATCTATAGAATCGAGTGCAGGCTGACCGAAAGAAGCACA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTCATCTATAGAATCGAGTGCAGGCTGACCGAAAGAAGCACA  891

seq1  TTTGCCTGACTGCAGATTCAAGAAGTGCATTGTACCATAGGCAACCTCTC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGACTGCAGATTCAAGAAGTGCATTGTACCATAGGCAACCTCTC  941

seq1  AGCTGTTTCTAAACAGAGAATTAACTTCAAAGGCTTTCTGGACATGTAAA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTCTAAACAGAGAATTAACTTCAAAGGCTTTCTGGACATGTAAA  991

seq1  TTCTTCCACTGCTGGTAGCTAATACACAAAACACCCCATGCACGAAAATG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCACTGCTGGTAGCTAATACACAAAACACCCCATGCACGAAAATG  1041

seq1  AAATCTCATGTAAAAATAGATACCCGGTAATGGTTGTATTTTAGTATTAA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCATGTAAAAATAGATACCCGGTAATGGTTGTATTTTAGTATTAA  1091

seq1  AAGCAAGAGTCACACCTTTAACCTCATTATTCTAGTGCTTCCCTTTTAGA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGAGTCACACCTTTAACCTCATTATTCTAGTGCTTCCCTTTTAGA  1141

seq1  AGACAAGTTAGAGACACTTTAAAAACAGGATTTACATCGGCAGTCACGTG  1187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTTAGAGACACTTTAAAAACAGGATTTACATCGGCAGTCACGTG  1191

seq1  TGATGAATTC  1197
      ||||||||||
seq2  TGATGAATTC  1201


seq1: chr16_52294799_52295985
seq2: B6Ng01-273H13.g_65_1227

seq1  GAATTCCTATAAAACACATGGCAATAAGCTATGGCTGGAGAGTGTTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATAAAACACATGGCAATAAGCTATGGCTGGAGAGTGTTGGAA  50

seq1  GTAATCGTTTAAGTTAGAGGTCAAATCTATAAGAAACATAGCACACCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCGTTTAAGTTAGAGGTCAAATCTATAAGAAACATAGCACACCATA  100

seq1  GAGAACCAAACACATATTTGTAAATGAGATAGCAGGAAATGGAGTCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCAAACACATATTTGTAAATGAGATAGCAGGAAATGGAGTCTATT  150

seq1  CTTAAGTCATGAGCAGTTTTTTTCTATAGATTTTCCAAGGAAGAAAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTCATGAGCAGTTTTTTTCTATAGATTTTCCAAGGAAGAAAAGAT  200

seq1  TATTTGTGTATCAGAGTTTTGTGATAAGGATTGGCAGCAGAATATTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGTATCAGAGTTTTGTGATAAGGATTGGCAGCAGAATATTAAGA  250

seq1  GAAACTGAATGAGGCTTGTGGAGATTTAAGGTATTTGAATATTATTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAATGAGGCTTGTGGAGATTTAAGGTATTTGAATATTATTTCTA  300

seq1  ATACATTAAATCTATACAATTATAATTTGGGTACTTACAGTAAATATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTAAATCTATACAATTATAATTTGGGTACTTACAGTAAATATCAA  350

seq1  AGATTTCTTGTTCGGAATAAATTGTTTTCTGGCCGGAGGGTCCATAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTTGTTCGGAATAAATTGTTTTCTGGCCGGAGGGTCCATAATAT  400

seq1  GTCACAGAACAGGTGAATGGCATTTGTATGTCAGATCTGGTTGTCTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGAACAGGTGAATGGCATTTGTATGTCAGATCTGGTTGTCTTGTA  450

seq1  CTCCAAGGAGGAAGTCACGGTATACAACTGAGTTCCTGGATCAATTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGGAGGAAGTCACGGTATACAACTGAGTTCCTGGATCAATTTCCT  500

seq1  TTTTAAAAAGTATGGCCACCTCTAAAGAAAGTAAAGAACATCAATGATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAGTATGGCCACCTCTAAAGAAAGTAAAGAACATCAATGATAA  550

seq1  TATCTTTCACTGGAAAATCACAATCCATAATTAAATATCAACACCCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCACTGGAAAATCACAATCCATAATTAAATATCAACACCCTTGA  600

seq1  GATATGAGTTTGTCCTTCTAATTGTATTTAGGAGGAGAGAAAGTTGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGAGTTTGTCCTTCTAATTGTATTTAGGAGGAGAGAAAGTTGAAAC  650

seq1  TCAGTGAGGTAAGATGTCATTCAAGACAGTGAATCAGAGACATAGGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAGGTAAGATGTCATTCAAGACAGTGAATCAGAGACATAGGCAAA  700

seq1  AATAGAATCCTGGAATCCCATCTCCCACTTAATTTAATTAACTTCCAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATCCTGGAATCCCATCTCCCACTTAATTTAATTAACTTCCAGAA  750

seq1  CATGCCATATATAGAAATACTCCATTCTGCTTTTGACTCTTCTACAC-AA  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CATGCCATATATAGAAATACTCCATTCTGCTTTTGACTCTTCTACACAAA  800

seq1  GGGATAAAATGGTGTCCAAAAAAATTGCCCAATAAGTTAAAGGGCACTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAAATGGTGTCCAAAAAAATTGCCCAATAAGTTAAAGGGCACTTA  850

seq1  ATTTAACTGAAACATAGACTTGTAAATAGAGACATGGGCAGCTGGTTTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTGAAACATAGACTTGTAAATAGAGACATGGGCAGCTGGTTTGA  900

seq1  TTCTGGACAGTTGATAGGATGACTAGCCTATATAATATCATAGAGGCCAC  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTCTGGACAGTTGATATGATGACTAGCCTATATAATATCATAGAGGCCAC  950

seq1  AGGAAGTCACTGCCTGCCTCAGACTCACCTCCTTCC-ACAGGTTGCAGCA  998
      ||||||||||||||||||||||||||| |||||||| ||||| |||||||
seq2  AGGAAGTCACTGCCTGCCTCAGACTCA-CTCCTTCCAACAGG-TGCAGCA  998

seq1  CTTTGCCATTCCTGTACCATGTGATGTTGCCATCTGGGTAACTGTCTCTT  1048
      | |||||| |||||||| |||||||||   ||||||| ||||||||||| 
seq2  C-TTGCCA-TCCTGTACAATGTGATGT--GCATCTGGTTAACTGTCTCT-  1043

seq1  GAAATGCAGTCACCTAACTGAAAAATGTAAGGGAAAATTTCCTCACTTCA  1098
        |||||||||||||||||| ||||||||||   |||||| ||||| |||
seq2  -GAATGCAGTCACCTAACTG-AAAATGTAAG---AAATTT-CTCACGTCA  1087

seq1  AATAGTTTCACATCCTTATTTCAACATGGAACCCACAAAATCTTTAGCAA  1148
      ||||| ||| ||| | || ||||||||| ||  | |||    | ||||||
seq2  AATAGGTTC-CAT-CGTAATTCAACATGCAA-GCTCAA----TCTAGCAA  1130

seq1  ATGGAGTGTCTTCAACCATTTATTTCCCAACTCTAAGAA  1187
      ||| |  |||||||  || |    |||||||||| ||||
seq2  ATGAA--GTCTTCA--CAGT--ACTCCCAACTCTTAGAA  1163


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