BAC Information

Click to search

BAC

Clone NameB6Ng01-273M04
Chromosome16 (Build37)
Map Location 5,160,644 - 5,286,609
singlet/doubletdoublet
Overlap geneSec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
Upstream geneCrebbp, EG436332, Adcy9, EG620313, Srl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl
Downstream geneLOC100042436, A2bp1, LOC100042445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273M04.bB6Ng01-273M04.g
ACCGA075249GA075250
length716738
definitionB6Ng01-273M04.b B6Ng01-273M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,160,644 - 5,161,357)(5,285,872 - 5,286,609)
sequence
gaattccttccctggagatagaaagaacatctgtcatcaaagtaccatcc
catcagatttcgtgtggggaaccgatgagatcatctggtttacttacaga
gcacaggtgagggagggattgcttacaggagtgagtgacccaaagatact
gcactggaaggtgattctgcttcaaggatgaaaagcttccccatagctgc
atagatggagtgattctttcagttaagctatacacaccatattcttcaga
gtcacccgagaccatcaaggccacatgcacttagaacagaatagcataca
agtgacagaggagtgactggattctcgggtaagggtccaatgattctttc
ccctatgttccatgggagaatgtcaagagcccgtcagcctgatggatggt
gacaattcttgtgagcaggtgcagccgagcggatgaacatggtgcctgct
ttgctcaggggattgtgctctatagcagctacccagaggggaggtggcgt
ctaagccagctctgccctccctcctgcatttggcacctgagaaggagcta
gtttgtcctatcttccagggctgtcactgggctctagacaccacctgtct
actcagcaatgaagctgtttcaggccctatagaaaggaaaggcagggtct
tgcttggaccatctgggagagggtggctgcccagggcctctgcaggctct
tgtgtcttctgctagt
gaattctcctgtctctaccatccatctcaacacaggagtgatggaattac
agaaatcgctgttatgcccagcattcctggggtcctcatgtttccatggt
aagacctttacccaccgagccatctcccaagcccaggactcttcactcta
caggtcttccagctgctatgcagacctgcagtgtcagacctgtggctctt
gaccttgagtagaaggtcttatgtctgagaagtcaaaattccacagcctc
tggcagcatctgagaacccaggtgtcagaattcctcagcctctgactgta
accattgtcactgcccccgagcttgggagtgaggagttgactctctggcc
caggaagaactggccttggggtcatctgcacttggcctctgtgtgtgtgg
tgcaaacagtcctggctgaagccgcatcttcaggggctgcaccgatcgat
ggagaatccttttgtccagcatagctagggcacctggggagagtccaaca
gctaccaattaggaagccacatggctttactatcagtgtcagaagtgatt
acaataagaactcatcgttaatgttgaaagtgattataataaattctaac
agtgctttaacagtgtcagacactctctgagaaccccaggaaagggtgag
tctcctcatctctctctaaagagttttgaaactcactcatcctgcatcct
gacccatctctactgcactgttccacgggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_5160644_5161357
seq2: B6Ng01-273M04.b_46_760

seq1  GAATTCCTTCCCTGGAGATAGAAAGAACATCTGTCATCAAAGTACCATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCCTGGAGATAGAAAGAACATCTGTCATCAAAGTACCATCC  50

seq1  CATCAGATTTCGTGTGGGGAACCGATGAGATCATCTGGTTTACTTACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATTTCGTGTGGGGAACCGATGAGATCATCTGGTTTACTTACAGA  100

seq1  GCACAGGTGAGGGAGGGATTGCTTACAGGAGTGAGTGACCCAAAGATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGTGAGGGAGGGATTGCTTACAGGAGTGAGTGACCCAAAGATACT  150

seq1  GCACTGGAAGGTGATTCTGCTTCAAGGATGAAAAGCTTCCCCATAGCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGAAGGTGATTCTGCTTCAAGGATGAAAAGCTTCCCCATAGCTGC  200

seq1  ATAGATGGAGTGATTCTTTCAGTTAAGCTATACACACCATATTCTTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGGAGTGATTCTTTCAGTTAAGCTATACACACCATATTCTTCAGA  250

seq1  GTCACCCGAGACCATCAAGGCCACATGCACTTAGAACAGAATAGCATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCGAGACCATCAAGGCCACATGCACTTAGAACAGAATAGCATACA  300

seq1  AGTGACAGAGGAGTGACTGGATTCTCGGGTAAGGGTCCAATGATTCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGAGGAGTGACTGGATTCTCGGGTAAGGGTCCAATGATTCTTTC  350

seq1  CCCTATGTTCCATGGGAGAATGTCAAGAGCCCGTCAGCCTGATGGATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGTTCCATGGGAGAATGTCAAGAGCCCGTCAGCCTGATGGATGGT  400

seq1  GACAATTCTTGTGAGCAGGTGCAGCCGAGCGGATGAACATGGTGCCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTCTTGTGAGCAGGTGCAGCCGAGCGGATGAACATGGTGCCTGCT  450

seq1  TTGCTCAGGGGATTGTGCTCTATAGCAGCTACCCAGAGGGGAGGTGGCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGGGGATTGTGCTCTATAGCAGCTACCCAGAGGGGAGGTGGCGT  500

seq1  CTAAGCCAGCTCTGCCCTCCCTCCTGCATTTGGCACCTGAGAAGGAGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCAGCTCTGCCCTCCCTCCTGCATTTGGCACCTGAGAAGGAGCTA  550

seq1  GTTTGTCCTATCTTCCAGGGCTGTCACTGGGCTCTAGACACCACCTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCCTATCTTCCAGGGCTGTCACTGGGCTCTAGACACCACCTGTCT  600

seq1  ACTCAGCAATGAAGCTGTTTCAGG-CCTAGAGAAAGGAAAGGCAGGGTCT  649
      |||||||||||||||||||||||| |||| ||||||||||||||||||||
seq2  ACTCAGCAATGAAGCTGTTTCAGGCCCTATAGAAAGGAAAGGCAGGGTCT  650

seq1  TGCTTGGACCAGCTGGGAGAGGGTGGCTGCCCAGGGCCTCTGCAGGCTCT  699
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGACCATCTGGGAGAGGGTGGCTGCCCAGGGCCTCTGCAGGCTCT  700

seq1  TGTGTCTTCTGCTAG  714
      |||||||||||||||
seq2  TGTGTCTTCTGCTAG  715

seq1: chr16_5285872_5286609
seq2: B6Ng01-273M04.g_65_802 (reverse)

seq1  CCCCCCCCCCCCGTGGAACAGTGCAGTAGAGATGGGTCAGGATGCAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCGTGGAACAGTGCAGTAGAGATGGGTCAGGATGCAGGAT  50

seq1  GAGTGAGTTTCAAAACTCTTTAGAGAGAGATGAGGAGACTCACCCTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGTTTCAAAACTCTTTAGAGAGAGATGAGGAGACTCACCCTTTCC  100

seq1  TGGGGTTCTCAGAGAGTGTCTGACACTGTTAAAGCACTGTTAGAATTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTCTCAGAGAGTGTCTGACACTGTTAAAGCACTGTTAGAATTTAT  150

seq1  TATAATCACTTTCAACATTAACGATGAGTTCTTATTGTAATCACTTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCACTTTCAACATTAACGATGAGTTCTTATTGTAATCACTTCTGA  200

seq1  CACTGATAGTAAAGCCATGTGGCTTCCTAATTGGTAGCTGTTGGACTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATAGTAAAGCCATGTGGCTTCCTAATTGGTAGCTGTTGGACTCTC  250

seq1  CCCAGGTGCCCTAGCTATGCTGGACAAAAGGATTCTCCATCGATCGGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTGCCCTAGCTATGCTGGACAAAAGGATTCTCCATCGATCGGTGC  300

seq1  AGCCCCTGAAGATGCGGCTTCAGCCAGGACTGTTTGCACCACACACACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTGAAGATGCGGCTTCAGCCAGGACTGTTTGCACCACACACACAG  350

seq1  AGGCCAAGTGCAGATGACCCCAAGGCCAGTTCTTCCTGGGCCAGAGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAGTGCAGATGACCCCAAGGCCAGTTCTTCCTGGGCCAGAGAGTC  400

seq1  AACTCCTCACTCCCAAGCTCGGGGGCAGTGACAATGGTTACAGTCAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTCACTCCCAAGCTCGGGGGCAGTGACAATGGTTACAGTCAGAGG  450

seq1  CTGAGGAATTCTGACACCTGGGTTCTCAGATGCTGCCAGAGGCTGTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAATTCTGACACCTGGGTTCTCAGATGCTGCCAGAGGCTGTGGAA  500

seq1  TTTTGACTTCTCAGACATAAGACCTTCTACTCAAGGTCAAGAGCCACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTTCTCAGACATAAGACCTTCTACTCAAGGTCAAGAGCCACAGG  550

seq1  TCTGACACTGCAGGTCTGCATAGCAGCTGGAAGACCTGTAGAGTGAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACACTGCAGGTCTGCATAGCAGCTGGAAGACCTGTAGAGTGAAGAG  600

seq1  TCCTGGGCTTGGGAGATGGCTCGGTGGGTAAAGGTCTTACCATGGAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGCTTGGGAGATGGCTCGGTGGGTAAAGGTCTTACCATGGAAACA  650

seq1  TGAGGACCCCAGGAATGCTGGGCATAACAGCGATTTCTGTAATTCCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACCCCAGGAATGCTGGGCATAACAGCGATTTCTGTAATTCCATCA  700

seq1  CTCCTGTGTTGAGATGGATGGTAGAGACAGGAGAATTC  738
      ||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTGTTGAGATGGATGGTAGAGACAGGAGAATTC  738