BAC Information

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BAC

Clone NameB6Ng01-273M23
Chromosome16 (Build37)
Map Location 37,116,661 - 37,325,277
singlet/doubletdoublet
Overlap geneStxbp5l
Upstream geneCsta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq
Downstream geneGtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273M23.bB6Ng01-273M23.g
ACCGA075285GA075286
length1,1331,029
definitionB6Ng01-273M23.b B6Ng01-273M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,324,145 - 37,325,277)(37,116,661 - 37,117,710)
sequence
gaattctttcagaaacacatttagagtcttctttctcctaatttctggat
aagaagtaaagttgagagttttaaaaaactttttcatgtagaatataaat
gagaatgggggacaatgttgtaaactgtgaaattataaaagattacttgt
aactaacttatttggaaaatatatataaaacattttaggtatcttaagac
taccatacttcttccggataactattagagaacacataggactttagggt
agtttcagttgacatttcagttgggtaaaagttctgccatatttaagatg
atctttaaatatcagtgaaatagtgtatgttagttatatgtggtacttag
taatatgtacatttattttctcctacatacaaaggtagaatgcatggtat
tgtatttgagatagaattaatttgaaattagtggaataggatgaaatcat
tttagtttttttttttttcgagacagggtttttctgtgtagccctggctg
tcctggaactcactttgtagagcaggctggctttgaactcagaaattatc
ctgcctctgcctcccaagtgctgggattaaaggcgtgcgctaccatgccc
ggcctctagtattatttatatagttatacttaattcaaggtgaagaaata
ttttattgtgggtgatattttacatcacaggtaaagctttttagactata
atcagcaggtcaaattataaaatacataattttaaggaatcatacataat
ttttagatataaaaaaacaaaagtataaccttacatgtatatttgattaa
tgaaactgagtttggtattggtttctttgtgcagttatatgatatttatg
tgaatagtagaaacaaaaaatttaaattctattttactgaaggaaattaa
aaaaaaaaaccctttaatagttacaatgatgctgtcttagtttgcttttc
agctgctgtgctaatgacaaaaaagcaacttgggggaggaattgtgttat
ttccatctgacagttgcagtctgttactgaagagattcaagacaggaact
tcagcagtgcagtttccttgcagcagaaccttgaggaatacctgtttgac
tggttttgcccccttgtcctagtcagtcagctt
gaattcaatctttctatctaccatgtgcaccccaggatttgaactcagat
tgtaagtttgatggtaagtgcctctactggctgagccatcttgggagcta
catctttttttttttttttttggcagggtctctcacttggcctggcactt
gcaagtcagctaggctaactagtcattgaaccccagtgatctgcttatct
gtactttcccatcattaagatcacaagcacatgctacctcgcctagcttt
cttatgtgcatgctgggaattgaactcaattcctaatatgcacaaagcaa
gcactttactgacacacctctctagccctacaattgcacttattaacata
aaggaattggaattctcaaatacataaaacctcatgtttgacaatgtatg
tttcaatctgaggctgcccaatattctctgttaatctttctatagacgca
tttgtaaggtccctgcttttctgtgaatactagatatttttaggcatagg
attagattatataaataaaggttttaaatttgtggtttttataatatact
aaaagttttcttgttaggaacagagctctgctttattcaacttaagtaaa
atgaagtgcaacatcgccatcttgattggattgccagattggtagcacag
acctgtaattccaactcttgtgaggaaaggggatcaagggttgaaggttg
gagtggtttacatagtgaggtcctttcacaaaacaaaacacattataata
cacagccatcttggcagaaacttagtgaatattttcagaaatgtcacatt
ggaaagcaacctagtttttaaaaacaaaagtatcactgatacctagttca
catactacaaaaacaacccttaataaaggatataattactgggtttagtg
tctcataaagttgtataatgtaactactatctgatttagatatttcattt
tccaaagaactcaaatatattagcatcatcatatattcattatccagctt
ggcacaactgatactttatgaacatgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_37324145_37325277
seq2: B6Ng01-273M23.b_45_1177 (reverse)

seq1  AAGCTGGCTGACTATGAGCCAGAGGGGGC-AAACCAGTC-AACA-GTATT  47
      |||||| ||||||| ||  || ||||||| ||||||||| |||| |||||
seq2  AAGCTGACTGACTAGGA--CA-AGGGGGCAAAACCAGTCAAACAGGTATT  47

seq1  CCTCCAGGGTTTCTGCTGCAAGG-AACTGCACTGCTGGAGTTCCTGTCCT  96
      |||| |||  ||||||||||||| ||||||||||||| ||||||||| ||
seq2  CCTCAAGG--TTCTGCTGCAAGGAAACTGCACTGCTGAAGTTCCTGT-CT  94

seq1  GGATTCTC-TCAGTAACAGACTGCAACCTGTCAGAT-GAAATAACACAAT  144
       || |||| ||||||||||||||||| ||||||||| |||||||||||||
seq2  TGAATCTCTTCAGTAACAGACTGCAA-CTGTCAGATGGAAATAACACAAT  143

seq1  TCCT-CCCCAAGTTGCTTTTTTGTCATTTAGCACAGCAGCTG-AAAGCAA  192
      |||| ||||||||||||||||||||| ||||||||||||||| |||||||
seq2  TCCTCCCCCAAGTTGCTTTTTTGTCA-TTAGCACAGCAGCTGAAAAGCAA  192

seq1  ACTAAGACAGCATCATTGTAACTATTAAAGGGTTTTTTTTTTTAATTTCC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGACAGCATCATTGTAACTATTAAAGGGTTTTTTTTTTTAATTTCC  242

seq1  TTCAGTAAAATAGAATTTAAATTTTTTGTTTCTACTATTCACATAAATAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAAAATAGAATTTAAATTTTTTGTTTCTACTATTCACATAAATAT  292

seq1  CATATAACTGCACAAAGAAACCAATACCAAACTCAGTTTCATTAATCAAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAACTGCACAAAGAAACCAATACCAAACTCAGTTTCATTAATCAAA  342

seq1  TATACATGTAAGGTTATACTTTTGTTTTTTTATATCTAAAAATTATGTAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGTAAGGTTATACTTTTGTTTTTTTATATCTAAAAATTATGTAT  392

seq1  GATTCCTTAAAATTATGTATTTTATAATTTGACCTGCTGATTATAGTCTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTTAAAATTATGTATTTTATAATTTGACCTGCTGATTATAGTCTA  442

seq1  AAAAGCTTTACCTGTGATGTAAAATATCACCCACAATAAAATATTTCTTC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTTACCTGTGATGTAAAATATCACCCACAATAAAATATTTCTTC  492

seq1  ACCTTGAATTAAGTATAACTATATAAATAATACTAGAGGCCGGGCATGGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAATTAAGTATAACTATATAAATAATACTAGAGGCCGGGCATGGT  542

seq1  AGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGATAATTTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGATAATTTC  592

seq1  TGAGTTCAAAGCCAGCCTGCTCTACAAAGTGAGTTCCAGGACAGCCAGGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCAAAGCCAGCCTGCTCTACAAAGTGAGTTCCAGGACAGCCAGGG  642

seq1  CTACACAGAAAAACCCTGTCTCGAAAAAAAAAAAAACTAAAATGATTTCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGAAAAACCCTGTCTCGAAAAAAAAAAAAACTAAAATGATTTCA  692

seq1  TCCTATTCCACTAATTTCAAATTAATTCTATCTCAAATACAATACCATGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTCCACTAATTTCAAATTAATTCTATCTCAAATACAATACCATGC  742

seq1  ATTCTACCTTTGTATGTAGGAGAAAATAAATGTACATATTACTAAGTACC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACCTTTGTATGTAGGAGAAAATAAATGTACATATTACTAAGTACC  792

seq1  ACATATAACTAACATACACTATTTCACTGATATTTAAAGATCATCTTAAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAACTAACATACACTATTTCACTGATATTTAAAGATCATCTTAAA  842

seq1  TATGGCAGAACTTTTACCCAACTGAAATGTCAACTGAAACTACCCTAAAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAGAACTTTTACCCAACTGAAATGTCAACTGAAACTACCCTAAAG  892

seq1  TCCTATGTGTTCTCTAATAGTTATCCGGAAGAAGTATGGTAGTCTTAAGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGTGTTCTCTAATAGTTATCCGGAAGAAGTATGGTAGTCTTAAGA  942

seq1  TACCTAAAATGTTTTATATATATTTTCCAAATAAGTTAGTTACAAGTAAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAAATGTTTTATATATATTTTCCAAATAAGTTAGTTACAAGTAAT  992

seq1  CTTTTATAATTTCACAGTTTACAACATTGTCCCCCATTCTCATTTATATT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATAATTTCACAGTTTACAACATTGTCCCCCATTCTCATTTATATT  1042

seq1  CTACATGAAAAAGTTTTTTAAAACTCTCAACTTTACTTCTTATCCAGAAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGAAAAAGTTTTTTAAAACTCTCAACTTTACTTCTTATCCAGAAA  1092

seq1  TTAGGAGAAAGAAGACTCTAAATGTGTTTCTGAAAGAATTC  1133
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGAAAGAAGACTCTAAATGTGTTTCTGAAAGAATTC  1133

seq1: chr16_37116661_37117710
seq2: B6Ng01-273M23.g_68_1096

seq1  GAATTCAATCTTTCTATCTACCATGTGCACCCCAGGATTTGAACTCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTTTCTATCTACCATGTGCACCCCAGGATTTGAACTCAGAT  50

seq1  TGTAAGTTTGATGGTAAGTGCCTCTACTGGCTGAGCCATCTTGGGAGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTTTGATGGTAAGTGCCTCTACTGGCTGAGCCATCTTGGGAGCTA  100

seq1  CATCTTTTTTTTTTTTTTTTTGGCAGGGTCTCTCACTTGGCCTGGCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTTTTTTTTTTTTTTGGCAGGGTCTCTCACTTGGCCTGGCACTT  150

seq1  GCAAGTCAGCTAGGCTAACTAGTCATTGAACCCCAGTGATCTGCTTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCAGCTAGGCTAACTAGTCATTGAACCCCAGTGATCTGCTTATCT  200

seq1  GTACTTTCCCATCATTAAGATCACAAGCACATGCTACCTCGCCTAGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTCCCATCATTAAGATCACAAGCACATGCTACCTCGCCTAGCTTT  250

seq1  CTTATGTGCATGCTGGGAATTGAACTCAATTCCTAATATGCACAAAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTGCATGCTGGGAATTGAACTCAATTCCTAATATGCACAAAGCAA  300

seq1  GCACTTTACTGACACACCTCTCTAGCCCTACAATTGCACTTATTAACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTACTGACACACCTCTCTAGCCCTACAATTGCACTTATTAACATA  350

seq1  AAGGAATTGGAATTCTCAAATACATAAAACCTCATGTTTGACAATGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTGGAATTCTCAAATACATAAAACCTCATGTTTGACAATGTATG  400

seq1  TTTCAATCTGAGGCTGCCCAATATTCTCTGTTAATCTTTCTATAGACGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATCTGAGGCTGCCCAATATTCTCTGTTAATCTTTCTATAGACGCA  450

seq1  TTTGTAAGGTCCCTGCTTTTCTGTGAATACTAGATATTTTTAGGCATAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGGTCCCTGCTTTTCTGTGAATACTAGATATTTTTAGGCATAGG  500

seq1  ATTAGATTATATAAATAAAGGTTTTAAATTTGTGGTTTTTATAATATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATTATATAAATAAAGGTTTTAAATTTGTGGTTTTTATAATATACT  550

seq1  AAAAGTTTTCTTGTTAGGAACAGAGCTCTGCTTTATTCAACTTAAGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTTCTTGTTAGGAACAGAGCTCTGCTTTATTCAACTTAAGTAAA  600

seq1  ATGAAGTGCAACATCGCCATCTTGATTGGATTGCCAGATTGGTAGCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTGCAACATCGCCATCTTGATTGGATTGCCAGATTGGTAGCACAG  650

seq1  ACCTGTAATTCCAACTCTTGTGAGGAAAGGGGATCAAGGGTTGAAGGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAATTCCAACTCTTGTGAGGAAAGGGGATCAAGGGTTGAAGGTTG  700

seq1  GAGTGGTTTACATAGTGAGGTCCTTTCACAAAACAAAACACATTATAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTTTACATAGTGAGGTCCTTTCACAAAACAAAACACATTATAATA  750

seq1  CACAGCCATCTTGGCAGAAACTTAGTGAATATTTTCAGAAATGTCACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCATCTTGGCAGAAACTTAGTGAATATTTTCAGAAATGTCACATT  800

seq1  GGAAAGCAACCTAGGTTTTTAAAAACAAAAGTATCACTGATACCTAGTTC  850
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCAACCTA-GTTTTTAAAAACAAAAGTATCACTGATACCTAGTTC  849

seq1  ACATACTACAAAAACAACCCTTAATAAAGGATATAATTACTGGGTTTTAG  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACATACTACAAAAACAACCCTTAATAAAGGATATAATTACTGGG-TTTAG  898

seq1  TGTCTCATAAAGTTGTATAAATGTAACTACTATCTGATTTTAGAATATTT  950
      |||||||||||||||||| |||||||||||||||||| ||||| ||| ||
seq2  TGTCTCATAAAGTTGTAT-AATGTAACTACTATCTGA-TTTAG-ATA-TT  944

seq1  TCATTTTTCCAAAAGAAACTCAAATATATTAGCAATCATTCCATATTATT  1000
      ||| |||||||||   ||||||||||||||||| |||||  |||| ||||
seq2  TCA-TTTTCCAAA--GAACTCAAATATATTAGC-ATCAT--CATA-TATT  987

seq1  CATTATCCCAGCCTTGGGCAACAACTGATTAACTTTTAGTGACCATGATT  1050
      |||||| |||| |||||   |||||||||  |||||   ||| |||||||
seq2  CATTAT-CCAG-CTTGG--CACAACTGAT--ACTTT--ATGAACATGATT  1029