BAC Information

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BAC

Clone NameB6Ng01-275C16
Chromosome16 (Build37)
Map Location 76,633,593 - 76,767,241
singlet/doubletdoublet
Overlap genenone
Upstream geneStch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1, LOC100039316
Downstream gene1700063K16Rik, LOC665120, Usp25, 2810055G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275C16.bB6Ng01-275C16.g
ACCGA076278GA076279
length1,1661,121
definitionB6Ng01-275C16.b B6Ng01-275C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,633,593 - 76,634,779)(76,766,129 - 76,767,241)
sequence
gaattcagaaaaatctgttttcctttacagaatgcactggcctcgtttcc
attttcatataccgcccatatccttgcaactcctttcattacacatctgg
accactggccacagctgctggtgttcatagaatagtatactcccattaac
tagagacattgactggtaatcaataacccatatatcacagaagccataag
atagagcttcccctttgttgggcttccagtgttctcctttctcttgcaga
catagatgtaaataatttggtatagcaaagtgatagctttgggtggagct
tgaacaacctagaaactgaggcctttatatttagctatttttgtatacaa
cgcatctcctcttacctgcagttgacaattcatatctctagactcctgtg
cagatttgaaattccatcacagtggaacatgcacaactaagaggagttaa
gagaacatgttttgtcgttgttggaattgatattttctgtttatctcgtt
tctaatatggactcaattatggctacttcgtgagcacatttttaagcaag
tatgcttatgacagtttactctgacctggaatgaaagtaaaatttgaaaa
taatctgttctacatgtgcttaaagtctaaaccacatgccgcagtgagtt
ctgttttcatgggtagtagccagcctacttagcgtgtccactttgagcgt
atgcttttgatgttctttataatgatctggtaaaaacagctttgcaacca
cacgagatggagatgaacctagcatactgaaaaatataattgaatagcat
gattaaaagttcatttttcttgataaataatttgattaagcagaatgaca
tcttgtgaaatggcttccattcaatatttttgttctgctttctcttctag
ggaccatattgattgcaacttttgaaataaagctatttaaacacaatcaa
ttaaaatgatattagaaggttgtgcacgtgttataaaaaaaatcaatgat
ctgtaattaaaaagcatacgcatggtatgtgcagctggttccatgtacag
ttgaaaaaattacagcacatattttatttactctttgaaagagaatagac
ctagtccaacagctgatgaccaacgtcgaataagctgtgttttggctcat
aaatccacgggaaggg

gaattcacagcaccttttctgtggtatgcagggcaggcagccaggtatac
ctaagagcaagtgcttgctgcttgcctcgctctcacccggaatgaggata
caggaatgacaaagggagatactggggaatgtcaagtcaaacaaatcata
gctcttctctggtggctcctttgaccttgttctgaggtaaggcacacagg
caggcgggagggacattcatgataagcaatgtttgtcatctgaggcttct
atctgctccaaaaggaaatctaaatctcccttatggaggcattgacattt
agcttggcacattttcagatactaggggaaaaaaaaaacatgacttgaca
agaaaaaaagtcaagtgaatacacagcagaaggaggccattacttcaata
gttcagaagctaatttacatagaagcatgcaaacacacatttctaaacac
tagaatttcttttttttcccctgccaccaagtcaagtatgacaactgtgg
tttttacaaatcacaaatcaagaaaaattggttcccccttgccacatcca
taatcttccttccttccttccttccttcctccctctctctctctctctct
ctctctccctctccctccctccctccctccctccctcccccttccttcct
tccttccttccttacttccttccttccttcctttctttctttctttctgt
attttcagtcacgtgaagttttttattttaaacatctctgagttgtcctg
tcttatattaagctttatctcatgctaagatgaggcaggtagtcttccag
agaagcatagcattcatttcaggtggttataaatcttaagtttggcacct
gcttcgtctgatgaacctcaccatacatgctccaagtttcagttaaatgc
cctcctggggtaggcaaaaatttgtagattagggggatacttattttata
tgacaaacggatccagttgttttccccaaattaaaaccctaggactcccg
agggactggtgtatacacacaatggctttacaagattgatagaagtttat
tcctttataatgcctgcctgaaaggtttatttttcgtccccctgtgtgac
ggatacctaatcttccctacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_76633593_76634779
seq2: B6Ng01-275C16.b_42_1207

seq1  GAATTCAGAAAAATCTGTTTTCCTTTACAGAATGCACTGGCCTCGTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAAATCTGTTTTCCTTTACAGAATGCACTGGCCTCGTTTCC  50

seq1  ATTTTCATATACCGCCCATATCCTTGCAACTCCTTTCATTACACATCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATATACCGCCCATATCCTTGCAACTCCTTTCATTACACATCTGG  100

seq1  ACCACTGGCCACAGCTGCTGGTGTTCATAGAATAGTATACTCCCATTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGGCCACAGCTGCTGGTGTTCATAGAATAGTATACTCCCATTAAC  150

seq1  TAGAGACATTGACTGGTAATCAATAACCCATATATCACAGAAGCCATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACATTGACTGGTAATCAATAACCCATATATCACAGAAGCCATAAG  200

seq1  ATAGAGCTTCCCCTTTGTTGGGCTTCCAGTGTTCTCCTTTCTCTTGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCTTCCCCTTTGTTGGGCTTCCAGTGTTCTCCTTTCTCTTGCAGA  250

seq1  CATAGATGTAAATAATTTGGTATAGCAAAGTGATAGCTTTGGGTGGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATGTAAATAATTTGGTATAGCAAAGTGATAGCTTTGGGTGGAGCT  300

seq1  TGAACAACCTAGAAACTGAGGCCTTTATATTTAGCTATTTTTGTATACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAACCTAGAAACTGAGGCCTTTATATTTAGCTATTTTTGTATACAA  350

seq1  CGCATCTCCTCTTACCTGCAGTTGACAATTCATATCTCTAGACTCCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATCTCCTCTTACCTGCAGTTGACAATTCATATCTCTAGACTCCTGTG  400

seq1  CAGATTTGAAATTCCATCACAGTGGAACATGCACAACTAAGAGGAGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTGAAATTCCATCACAGTGGAACATGCACAACTAAGAGGAGTTAA  450

seq1  GAGAACATGTTTTGTCGTTGTTGGAATTGATATTTTCTGTTTATCTCGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACATGTTTTGTCGTTGTTGGAATTGATATTTTCTGTTTATCTCGTT  500

seq1  TCTAATATGGACTCAATTATGGCTACTTCGTGAGCACATTTTTAAGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATATGGACTCAATTATGGCTACTTCGTGAGCACATTTTTAAGCAAG  550

seq1  TATGCTTATGACAGTTTACTCTGACCTGGAATGAAAGTAAAATTTGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTATGACAGTTTACTCTGACCTGGAATGAAAGTAAAATTTGAAAA  600

seq1  TAATCTGTTCTACATGTGCTTAAAGTCTAAACCACATGCCGCAGTGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGTTCTACATGTGCTTAAAGTCTAAACCACATGCCGCAGTGAGTT  650

seq1  CTGTTTTCATGGGTAGTAGCCAGCCTACTTAGCGTGTCCACTTTGAGCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCATGGGTAGTAGCCAGCCTACTTAGCGTGTCCACTTTGAGCGT  700

seq1  ATGCTTTTGATGTTCTTTATAATGATCTGGTAAAAACAGCTTTGCAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTGATGTTCTTTATAATGATCTGGTAAAAACAGCTTTGCAACCA  750

seq1  CACGAGATGGAGATGAACCTAGCATACTGAAAAATATAATTGAATAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGATGGAGATGAACCTAGCATACTGAAAAATATAATTGAATAGCAT  800

seq1  GATTAAAAGTTCATTTTTCTTGATAAATAATTTGATTAAGCAGAATGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAAGTTCATTTTTCTTGATAAATAATTTGATTAAGCAGAATGACA  850

seq1  TCTTGTGAAATGGCTTCCATTCAATATTTTTGTTCTGCTTTCTCTTCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGAAATGGCTTCCATTCAATATTTTTGTTCTGCTTTCTCTTCTAG  900

seq1  GGACCATATTGATTGCAACTTTTGAAATAAAGCTATTTAAACACAATCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATATTGATTGCAACTTTTGAAATAAAGCTATTTAAACACAATCAA  950

seq1  TTAAAATGATATTAAGAAGGTTGTGCACGTGTTTATAAAAAAATCAAATG  1000
      ||||||||||||| ||||||||||||||||| |||||||||||   ||||
seq2  TTAAAATGATATT-AGAAGGTTGTGCACGTG-TTATAAAAAAAATCAATG  998

seq1  ATCTGTTAATTAAAAAGCATAAGGCATTGGTAATGTTGCAGCTGGTTTCC  1050
      ||||| |||||||||||||| | ||| |||| ||| ||||||||| ||||
seq2  ATCTG-TAATTAAAAAGCAT-ACGCA-TGGT-ATG-TGCAGCTGG-TTCC  1042

seq1  ATGGTAACAGTTTGAAAAAATTAACAGCACATATTTTATTTACTCTTTGA  1100
      |||   |||| ||||||||||| |||||||||||||||||||||||||||
seq2  ATG--TACAG-TTGAAAAAATT-ACAGCACATATTTTATTTACTCTTTGA  1088

seq1  AAGAG-ATAGACCTAGTCAAACAGGCTGATGACCCAAAACGGGCAGATTT  1149
      ||||| |||||||||||| |||| ||||||||||   |||  |  || | 
seq2  AAGAGAATAGACCTAGTCCAACA-GCTGATGACC---AAC--GTCGAAT-  1131

seq1  ATAGCTGTGTGTTTGGGCTCATAAATCCACGGGAAGGG  1187
        |||  ||||||| |||||||||||||||||||||||
seq2  -AAGC--TGTGTTTTGGCTCATAAATCCACGGGAAGGG  1166


seq1: chr16_76766129_76767241
seq2: B6Ng01-275C16.g_75_1195 (reverse)

seq1  GGTAGGGGGCAGAATTAGGTACTCCTTCACACAGGGGGAC-AAAAATAAA  49
      |||||||   |  |||||||| ||| |||||||||||||| |||||||||
seq2  GGTAGGG---AAGATTAGGTA-TCCGTCACACAGGGGGACGAAAAATAAA  46

seq1  CTTTTCA-GCAAGCA-TATAAA-GAATAAAC-TCTATCCATCTTTGAAAG  95
      | ||||| ||| ||| |||||| |||||||| |||||| |||||  ||||
seq2  CCTTTCAGGCAGGCATTATAAAGGAATAAACTTCTATCAATCTTGTAAAG  96

seq1  C--ATGTGTGTATACA-CAGTCCCTCGGGAGTCCTTAGGTTTTAATTTGG  142
      |   |||||||||||| ||||||||||||||||||  |||||||||||||
seq2  CCATTGTGTGTATACACCAGTCCCTCGGGAGTCCTAGGGTTTTAATTTGG  146

seq1  GG-AAACAACTGGATCCGTTTGTCATATAAAAT-AGTATCCCCCTAATCT  190
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGAAAACAACTGGATCCGTTTGTCATATAAAATAAGTATCCCCCTAATCT  196

seq1  ACAAATTTTTTGCCCTACCCCAGGA-GGCATTTAACTGAAACTTGGAGCA  239
      ||||||||||   |||||||||||| ||||||||||||||||||||||||
seq2  ACAAATTTTT--GCCTACCCCAGGAGGGCATTTAACTGAAACTTGGAGCA  244

seq1  TGTATGGTGAGGTTCATCAGACG-AGCAGGTGCCAAACTTAAGATTTATA  288
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTATGGTGAGGTTCATCAGACGAAGCAGGTGCCAAACTTAAGATTTATA  294

seq1  ACCACCCTGAAATGAATGCTATGCTTCTCTGGAAGACTACCTGCCTCATC  338
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCA-CCTGAAATGAATGCTATGCTTCTCTGGAAGACTACCTGCCTCATC  343

seq1  TTAGCATGAGATAAAGCTTAATATAAGACAGGACAACTCAGAGATGTTTA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATGAGATAAAGCTTAATATAAGACAGGACAACTCAGAGATGTTTA  393

seq1  AA--TAAAAACTTCACGTGACTGAAAATACAGAAAGAAAGAAAGAAAGGA  436
      ||   |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAACTTCACGTGACTGAAAATACAGAAAGAAAGAAAGAAAGGA  443

seq1  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGGGAGGGAGGG  486
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGTAAGGAAGGAAGGAAGGAAGGAAGGGGGAGGGAGGG  493

seq1  AGGGAGGGAGGGAGGGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGGGAG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGAGGGAGGGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGGGAG  543

seq1  GAAGGAAGGAAGGAAGGAAGGAAGATTATGGATGTGGCAAGGGGGAACCA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGAAGGAAGGAAGGAAGATTATGGATGTGGCAAGGGGGAACCA  593

seq1  ATTTTTCTTGATTTGTGATTTGTAAAAACCACAGTTGTCATACTTGACTT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTGATTTGTGATTTGTAAAAACCACAGTTGTCATACTTGACTT  643

seq1  GGTGGCAGGGGAAAAAAAAGAAATTCTAGTGTTTAGAAATGTGTGTTTGC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAGGGGAAAAAAAAGAAATTCTAGTGTTTAGAAATGTGTGTTTGC  693

seq1  ATGCTTCTATGTAAATTAGCTTCTGAACTATTGAAGTAATGGCCTCCTTC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCTATGTAAATTAGCTTCTGAACTATTGAAGTAATGGCCTCCTTC  743

seq1  TGCTGTGTATTCACTTGACTTTTTTTCTTGTCAAGTCATGTTTTTTTTTT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTATTCACTTGACTTTTTTTCTTGTCAAGTCATGTTTTTTTTTT  793

seq1  CCCCTAGTATCTGAAAATGTGCCAAGCTAAATGTCAATGCCTCCATAAGG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAGTATCTGAAAATGTGCCAAGCTAAATGTCAATGCCTCCATAAGG  843

seq1  GAGATTTAGATTTCCTTTTGGAGCAGATAGAAGCCTCAGATGACAAACAT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTAGATTTCCTTTTGGAGCAGATAGAAGCCTCAGATGACAAACAT  893

seq1  TGCTTATCATGAATGTCCCTCCCGCCTGCCTGTGTGCCTTACCTCAGAAC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATCATGAATGTCCCTCCCGCCTGCCTGTGTGCCTTACCTCAGAAC  943

seq1  AAGGTCAAAGGAGCCACCAGAGAAGAGCTATGATTTGTTTGACTTGACAT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAAAGGAGCCACCAGAGAAGAGCTATGATTTGTTTGACTTGACAT  993

seq1  TCCCCAGTATCTCCCTTTGTCATTCCTGTATCCTCATTCCGGGTGAGAGC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGTATCTCCCTTTGTCATTCCTGTATCCTCATTCCGGGTGAGAGC  1043

seq1  GAGGCAAGCAGCAAGCACTTGCTCTTAGGTATACCTGGCTGCCTGCCCTG  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAGCAGCAAGCACTTGCTCTTAGGTATACCTGGCTGCCTGCCCTG  1093

seq1  CATACCACAG-CAAGCTGCTGTGAATTC  1113
      ||||||||||  ||| ||||||||||||
seq2  CATACCACAGAAAAGGTGCTGTGAATTC  1121


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