BAC Information

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BAC

Clone NameB6Ng01-275F18
Chromosome16 (Build37)
Map Location 66,181,578 - 66,182,695
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672931, Pou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
Downstream geneCadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275F18.bB6Ng01-275F18.g
ACCGA076423GA076424
length1,2181,110
definitionB6Ng01-275F18.b B6Ng01-275F18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattctttttaatagctgagtagtactccattgtgtaaatgtacc
acattttttgtatccattccactcttgaggggaatctgggttctttccag
cttctggctattataaataaggctgctatgaacatagtggagcatgtgtc
cttcttaccggttgggacatcttctggatatacgcccaggagaggtattg
ctggatcctccggtagtactatgtccaattttcgggggaaccgccagacg
gattttcagagtggttgtaccagcttgcaatcccaccaacgatggaggaa
tgttcctctttctccacatcctcgccagcatctgctgtcacctgaatttt
tgatcttagccattctgactggtgtgagatggaatctcagggttgttttg
atttgcatttctttgatgattaaggatgttgaacttttttcaggtgtttc
tcagcctttcggtattcctcgggtgagaattctttgttcagctctgagac
ccatcttttaatggggctatttgattttctggagtccaccctcttgagtt
ctttgtatatattggatattagtcccctatctgatttaagataggtaaag
atcctttcccaatctgttggtggtctttttgtcttattgacagtgtcttt
tgcgttgcagaaactttgcagtttcatgaggtcccatttgtcaatcctcg
atcttaaagcacaagccattattgttctattcaggaattttttccctgtg
cccatatcttcgagacttcccccactttctcctctataagtttcagtgtc
tctggttttatgtgaagttccttgatccacttagatttgaccttagtaga
agaagagaggaatgggtcgatttgcattctttctacatgataacaaccag
ttgtgccagcacccattgttgaaaatgctgtctttttccactggatgggt
ttagctcccttgtcgagatcaagtgaccataggtgttgtgggttcatttt
ctgggtcttcaattctatttccattggtctacttgtctgtcactatacag
ttaccatgcagttttatcaccaattgctctttgagttctcaagtcccgcg
cgatgggattgaagcagatgttgtgtcctctacccagatcttttagaatt
gcttgcagggttgttgggtaagctgggcgtagtctcaagaagaactgtgc
agagccttcatatcatct
gaattctatgttatggaaaacaaaacaatgatagataggctgagctatat
ctgcatgtgcatatgtgttttggtgcatgtgcattttgtcagagaaagtg
aaagacctggagacaaactgaagttaccatcagaggactgcaaaagagga
acatgagaaggagaattagaaagaagatagaattcaaaaggagaggggag
aggagtcagtaagagagagtaacatggttgattctgatccaaattcattg
tacacgtgtgtgacattgcttatgagacaaacaataaaacatcttgcata
gtgcatgaaattgtcaacaaagaaaatcagacaaagccaccaacatcttc
ctccccttggactttcctgttcaccatacagtgagcaagtttatcaagat
gtgtccttcctgtcataatgttcaattttgccagagctcatcaaacaatg
gaatcgaatcaccaccaaatagttgggtctatggaattttaaaattacta
gtgaaaataaagcttttcttgtttatggttgtttgcatcaggcaatttca
tttaactgactgacaaatgcatgctaactgatttttgaatattgtctcat
tatatatctaacacatagtctagaaacaaatatatatttgggctaatatc
caaatataatggtgagttcagatgtaagaggcactcaaggaaattaaatt
ataccagagtctagtgaggaaagtaattacagaaaggaaaagtctgctct
gggcacagtagcccctcagcatgttgacttgactgagatagagaaggcag
caagaaccttcccttgtatgatagtagtaaggcaagatttctatggagta
attgaatagaaatattccctttgagtgaagagttgaagagagcaaatata
aagtttaggcatttttttctttctcaatttttattaggtattttcttcat
tttaaaacacttttacccgttaatgatatattaaagagtttatactaaca
cacagtaggcccagactggtgtttcaggcatctgtgagcactgtctagct
ggagaaaacagctctgtcccatttcttccactgggcatcacatccgactc
ttctatttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66181578_66182695
seq2: B6Ng01-275F18.g_74_1183

seq1  GAATTCTATGTTATGGAAAACAAAACAATGATAGATAGGCTGAGCTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTTATGGAAAACAAAACAATGATAGATAGGCTGAGCTATAT  50

seq1  CTGCATGTGCATATGTGTTTTGGTGCATGTGCATTTTGTCAGAGAAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTGCATATGTGTTTTGGTGCATGTGCATTTTGTCAGAGAAAGTG  100

seq1  AAAGACCTGGAGACAAACTGAAGTTACCATCAGAGGACTGCAAAAGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCTGGAGACAAACTGAAGTTACCATCAGAGGACTGCAAAAGAGGA  150

seq1  ACATGAGAAGGAGAATTAGAAAGAAGATAGAATTCAAAAGGAGAGGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGAAGGAGAATTAGAAAGAAGATAGAATTCAAAAGGAGAGGGGAG  200

seq1  AGGAGTCAGTAAGAGAGAGTAACATGGTTGATTCTGATCCAAATTCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCAGTAAGAGAGAGTAACATGGTTGATTCTGATCCAAATTCATTG  250

seq1  TACACGTGTGTGACATTGCTTATGAGACAAACAATAAAACATCTTGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGTGTGTGACATTGCTTATGAGACAAACAATAAAACATCTTGCATA  300

seq1  GTGCATGAAATTGTCAACAAAGAAAATCAGACAAAGCCACCAACATCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGAAATTGTCAACAAAGAAAATCAGACAAAGCCACCAACATCTTC  350

seq1  CTCCCCTTGGACTTTCCTGTTCACCATACAGTGAGCAAGTTTATCAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTTGGACTTTCCTGTTCACCATACAGTGAGCAAGTTTATCAAGAT  400

seq1  GTGTCCTTCCTGTCATAATGTTCAATTTTGCCAGAGCTCATCAAACAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTCCTGTCATAATGTTCAATTTTGCCAGAGCTCATCAAACAATG  450

seq1  GAATCGAATCACCACCAAATAGTTGGGTCTATGGAATTTTAAAATTACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGAATCACCACCAAATAGTTGGGTCTATGGAATTTTAAAATTACTA  500

seq1  GTGAAAATAAAGCTTTTCTTGTTTATGGTTGTTTGCATCAGGCAATTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATAAAGCTTTTCTTGTTTATGGTTGTTTGCATCAGGCAATTTCA  550

seq1  TTTAACTGACTGACAAATGCATGCTAACTGATTTTTGAATATTGTCTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTGACTGACAAATGCATGCTAACTGATTTTTGAATATTGTCTCAT  600

seq1  TATATATCTAACACATAGTCTAGAAACAAATATATATTTGGGCTAATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATCTAACACATAGTCTAGAAACAAATATATATTTGGGCTAATATC  650

seq1  CAAATATAATGGTGAGTTCAGATGTAAGAGGCACTCAAGGAAATTAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATAATGGTGAGTTCAGATGTAAGAGGCACTCAAGGAAATTAAATT  700

seq1  ATACCAGAGTCTAGTGAGGAAAGTAATTACAGAAAGGAAAAGTCTGCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGAGTCTAGTGAGGAAAGTAATTACAGAAAGGAAAAGTCTGCTCT  750

seq1  GGGCACAGTAGCCCCTCAGCATGTTGACTTGACTGAGATAGAGAAGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAGTAGCCCCTCAGCATGTTGACTTGACTGAGATAGAGAAGGCAG  800

seq1  CAAGAACCTTCCCTTGTATGATAGTAGTAAGGCAAGATTTCTATGGAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACCTTCCCTTGTATGATAGTAGTAAGGCAAGATTTCTATGGAGTA  850

seq1  ATTGAATAGAAATATTCCCTTTGAGTGAAGAGTTGAAGAGAGCAAATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATAGAAATATTCCCTTTGAGTGAAGAGTTGAAGAGAGCAAATATA  900

seq1  AAGTTTAGGCATTTTTTTCTTTCTCCAATTTTTATTAGGTATTTTCTTCA  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAGTTTAGGCATTTTTTTCTTTCT-CAATTTTTATTAGGTATTTTCTTCA  949

seq1  TTTTAAAACACTTTTACCCGTTTAATGATATTATTAAAGAGTTTATACCT  1000
      |||||||||||||||||||| ||||||||| |||||||||||||||| ||
seq2  TTTTAAAACACTTTTACCCG-TTAATGATA-TATTAAAGAGTTTATA-CT  996

seq1  AACACACAGTAGGCCCAGACT-GTGTTTCCAGGCATCTGTGAGCACCTGT  1049
      ||||||||||||||||||||| |||||| |||||||||||||||| ||||
seq2  AACACACAGTAGGCCCAGACTGGTGTTT-CAGGCATCTGTGAGCA-CTGT  1044

seq1  CTTAGCTGAGAAAAACAGCTCTGTCCCCATTTCTTCCACTGGCAATCACA  1099
      | ||||||   ||||||||||||| |||||||||||||||||  ||||||
seq2  C-TAGCTGGAGAAAACAGCTCTGT-CCCATTTCTTCCACTGGGCATCACA  1092

seq1  TCCCAACTCTCCTATTTAT  1118
      | || ||||| ||||||||
seq2  T-CCGACTCTTCTATTTAT  1110