BAC Information

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BAC

Clone NameB6Ng01-275H09
Chromosome16 (Build37)
Map Location 20,333,963 - 20,418,213
singlet/doubletdoublet
Overlap geneAbcc5
Upstream geneOlfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044
Downstream geneEif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915, 2310042E22Rik, Ephb3, 6430590I03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275H09.bB6Ng01-275H09.g
ACCGA076493GA076494
length1,183839
definitionB6Ng01-275H09.b B6Ng01-275H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,417,024 - 20,418,213)(20,333,963 - 20,334,801)
sequence
gaattctttcttgtttcccaaggtgttatgtttgctcttttcttcttttt
cttaacatttttggcttaaaatatttaagaaatacttatttttaagaagt
tattcttagccttgaactaagcaatgaaaccataggtttattcaacttat
ttttgtacataaattattacgaatgtatagctattcagtattttgagaag
tacacataccttctgaaatcttcagtatttcctttcaaaactgtgatttc
ttagatacactcattgcaagcttgtagatggtgtaagctttattgctgag
gaattagaacgattccagaagttttcaggcttgaaataatattcatgtca
attatttcagtttttaaggaagagaaaacacacactttatttatttgttt
gtttgtctgtttgtttgtttgtttttcgagacagggttcctctgtgtagc
cctggctgtcctggaactctctctggagaccaggctggccttgaaatcag
aaattctccagcctttgcctcccaagtgctgggattaaaggcgtgcgcca
ccactgcccagctgagaataatatattttaaagagaaacaaaacaaaaca
aacaaacaagaccctgaacagctgattgggtaaagagtgatgtttcttgc
cacacttcctgagtatctgctccatccttagagaatggttctgctaggag
cactctccctgctgctcattacaaaggaactgtatctgcaccgtagaagg
ctttctaggccacctctgatctccagttaacatataagcatacaacagtt
gcaaacatgttagaatcaaaaaggaccaagaagccagtgtgttagaaagg
acctgaaaacacgctttggacagttcttggtattgtatgatttttttttt
ttttaatattctggggaaattgtgttaaacagttacattaagtatctata
gtctattataaatgcttggagttaattagtgtaaaaagttacattttgta
ctctttagaactgtaaattagtgtgaattgccacatatatctgagactta
gcagacatggtttactcctccagtgctgattgcatttttcttgttgtctt
tttctgatctagatggagtatgatgcattatttgagctagtgtaacttcc
ctctggatcactgctgaaacgttcatgtttctt
gaattcatataacctactacataccaagtgtatagctactctatacttgt
gtgtgagtcactgcagtgcatgtgctctcggcctgtttgcaatatgtaat
tctgttagtttccatcccatgaaaatatctcaaaaaggtaagatcctatt
ggatagtgggtccttaggtttggttctaaaaatataattttttgtactgg
ctggttttgtgtgtcaacttgacacaacctggagttatcacagagaaaag
agtctcccttgaggaaatgagatccagctgtaaggcagtttctcaattag
tgatcaagaagggagggcctagcccactgggtggtgccagcccctggctg
gtagtcttgggttctacaagaaagcaagctgagcaagccagtaggcagca
ttcattcctccatggcttctgtatccactctgccttcaaggtcctccacc
ttgtggagtccttatcctgacttcctttagtgatgaacagcaatgtggaa
gagtaagctgaataaatcctttcctccccaacttgcttcttggtcatgat
gttttgtgcaggaatagcgatctactcaaacatgcccactttctccatga
ccttcatgtgtagattagtttttctggacttctcctttcctgtttgccag
agggttccatctgatgacagtctccagcagtctttaatctgatgtctctg
caattctatccttagccagaaacacagttgtccttgaattccaaggcttg
ggggaagttaagaaacaacgcaaagccctgccatggtggtgtacaccttt
agccccagcacttgggaggcagaagcgagtcagatttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_20417024_20418213
seq2: B6Ng01-275H09.b_40_1222 (reverse)

seq1  AAGAAACATGACAGTGTTCAGCAGTGATCCAAAGAGAGAAGTCTACACTT  50
      |||||||||||  || ||||||||||||||  |||| ||||| |||||| 
seq2  AAGAAACATGAACGT-TTCAGCAGTGATCC--AGAGGGAAGT-TACACT-  45

seq1  AAGCTCAAATAATGCCAACCAATATTCATTCTTAGATCAAGGAAAAGAC-  99
       ||||||||||||||  | | ||| ||  || |||||| || ||||||| 
seq2  -AGCTCAAATAATGC--ATC-ATACTCCATC-TAGATC-AGAAAAAGACA  89

seq1  ACA--GAAAATGCAATCAGCACTTGA-GAGTAAACCATGTCTGCTAAGTC  146
      |||   ||||||||||||||||| || |||||||||||||||||||||||
seq2  ACAAGAAAAATGCAATCAGCACTGGAGGAGTAAACCATGTCTGCTAAGTC  139

seq1  TCAGATTATATGTGGCAATTCACACTAATTTTACAGTTCTAAAGAGTAC-  195
      ||||| |||||||||||||||||||||| |||||||||||||||||||| 
seq2  TCAGA-TATATGTGGCAATTCACACTAA-TTTACAGTTCTAAAGAGTACA  187

seq1  AAATGTTACTTTTTACACTAATTAACTCCAAGCATTTATAATAGACTATA  245
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAACTTTTTACACTAATTAACTCCAAGCATTTATAATAGACTATA  237

seq1  GATACTTAATGTAACTGTTTAACACAATTTCCCCAGAATATT-AAAAAAA  294
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GATACTTAATGTAACTGTTTAACACAATTTCCCCAGAATATTAAAAAAAA  287

seq1  AAAAAATCATACAATACCAAGAACTGTCCAAAGCGTGTTTTCAGGTCCTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCATACAATACCAAGAACTGTCCAAAGCGTGTTTTCAGGTCCTT  337

seq1  TCTAACACACTGGCTTCTTGGTCCTTTTTGATTCTAACATGTTTGCAACT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACACACTGGCTTCTTGGTCCTTTTTGATTCTAACATGTTTGCAACT  387

seq1  GTTGTATGCTTATATGTTAACTGGAGATCAGAGGTGGCCTAGAAAGCCTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATGCTTATATGTTAACTGGAGATCAGAGGTGGCCTAGAAAGCCTT  437

seq1  CTACGGTGCAGATACAGTTCCTTTGTAATGAGCAGCAGGGAGAGTGCTCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGGTGCAGATACAGTTCCTTTGTAATGAGCAGCAGGGAGAGTGCTCC  487

seq1  TAGCAGAACCATTCTCTAAGGATGGAGCAGATACTCAGGAAGTGTGGCAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAACCATTCTCTAAGGATGGAGCAGATACTCAGGAAGTGTGGCAA  537

seq1  GAAACATCACTCTTTACCCAATCAGCTGTTCAGGGTCTTGTTTGTTTGTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATCACTCTTTACCCAATCAGCTGTTCAGGGTCTTGTTTGTTTGTT  587

seq1  TTGTTTTGTTTCTCTTTAAAATATATTATTCTCAGCTGGGCAGTGGTGGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTCTCTTTAAAATATATTATTCTCAGCTGGGCAGTGGTGGC  637

seq1  GCACGCCTTTAATCCCAGCACTTGGGAGGCAAAGGCTGGAGAATTTCTGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCCTTTAATCCCAGCACTTGGGAGGCAAAGGCTGGAGAATTTCTGA  687

seq1  TTTCAAGGCCAGCCTGGTCTCCAGAGAGAGTTCCAGGACAGCCAGGGCTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGCCAGCCTGGTCTCCAGAGAGAGTTCCAGGACAGCCAGGGCTA  737

seq1  CACAGAGGAACCCTGTCTCGAAAAACAAACAAACAAACAGACAAACAAAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGAACCCTGTCTCGAAAAACAAACAAACAAACAGACAAACAAAC  787

seq1  AAATAAATAAAGTGTGTGTTTTCTCTTCCTTAAAAACTGAAATAATTGAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAAGTGTGTGTTTTCTCTTCCTTAAAAACTGAAATAATTGAC  837

seq1  ATGAATATTATTTCAAGCCTGAAAACTTCTGGAATCGTTCTAATTCCTCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATTATTTCAAGCCTGAAAACTTCTGGAATCGTTCTAATTCCTCA  887

seq1  GCAATAAAGCTTACACCATCTACAAGCTTGCAATGAGTGTATCTAAGAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAAGCTTACACCATCTACAAGCTTGCAATGAGTGTATCTAAGAAA  937

seq1  TCACAGTTTTGAAAGGAAATACTGAAGATTTCAGAAGGTATGTGTACTTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTTTGAAAGGAAATACTGAAGATTTCAGAAGGTATGTGTACTTC  987

seq1  TCAAAATACTGAATAGCTATACATTCGTAATAATTTATGTACAAAAATAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATACTGAATAGCTATACATTCGTAATAATTTATGTACAAAAATAA  1037

seq1  GTTGAATAAACCTATGGTTTCATTGCTTAGTTCAAGGCTAAGAATAACTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATAAACCTATGGTTTCATTGCTTAGTTCAAGGCTAAGAATAACTT  1087

seq1  CTTAAAAATAAGTATTTCTTAAATATTTTAAGCCAAAAATGTTAAGAAAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAATAAGTATTTCTTAAATATTTTAAGCCAAAAATGTTAAGAAAA  1137

seq1  AGAAGAAAAGAGCAAACATAACACCTTGGGAAACAAGAAAGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAAGAGCAAACATAACACCTTGGGAAACAAGAAAGAATTC  1183

seq1: chr16_20333963_20334801
seq2: B6Ng01-275H09.g_62_900

seq1  GAATTCATATAACCTACTACATACCAAGTGTATAGCTACTCTATACTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATAACCTACTACATACCAAGTGTATAGCTACTCTATACTTGT  50

seq1  GTGTGAGTCACTGCAGTGCATGTGCTCTCGGCCTGTTTGCAATATGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTCACTGCAGTGCATGTGCTCTCGGCCTGTTTGCAATATGTAAT  100

seq1  TCTGTTAGTTTCCATCCCATGAAAATATCTCAGAAAGGTAAGATCCTATT  150
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTGTTAGTTTCCATCCCATGAAAATATCTCAAAAAGGTAAGATCCTATT  150

seq1  GGATAGTGGGTCCTTAGGTTTGGTTCTAAAAATATAATTTTTTGTACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGTGGGTCCTTAGGTTTGGTTCTAAAAATATAATTTTTTGTACTGG  200

seq1  CTGGTTTTGTGTGTCAACTTGACACAACCTGGAGTTATCACAGAGAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTGTGTGTCAACTTGACACAACCTGGAGTTATCACAGAGAAAAG  250

seq1  AGTCTCCCTTGAGGAAATGAGATCCAGCTGTAAGGCAGTTTCTCAATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCTTGAGGAAATGAGATCCAGCTGTAAGGCAGTTTCTCAATTAG  300

seq1  TGATCAAGAAGGGAGGGCCTAGCCCACTGGGTGGTGCCAGCCCCTGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAGAAGGGAGGGCCTAGCCCACTGGGTGGTGCCAGCCCCTGGCTG  350

seq1  GTAGTCTTGGGTTCTACAAGAAAGCAAGCTGAGCAAGCCAGTAGGCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTTGGGTTCTACAAGAAAGCAAGCTGAGCAAGCCAGTAGGCAGCA  400

seq1  TTCATTCCTCCATGGCTTCTGTATCCACTCTGCCTTCAAGGTCCTCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCCTCCATGGCTTCTGTATCCACTCTGCCTTCAAGGTCCTCCACC  450

seq1  TTGTGGAGTCCTTATCCTGACTTCCTTTAGTGATGAACAGCAATGTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAGTCCTTATCCTGACTTCCTTTAGTGATGAACAGCAATGTGGAA  500

seq1  GAGTAAGCTGAATAAATCCTTTCCTCCCCAACTTGCTTCTTGGTCATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGCTGAATAAATCCTTTCCTCCCCAACTTGCTTCTTGGTCATGAT  550

seq1  GTTTTGTGCAGGAATAGCGATCTACTCAAACATGCCCACTTTCTCCATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGCAGGAATAGCGATCTACTCAAACATGCCCACTTTCTCCATGA  600

seq1  CCTTCATGTGTAGATTAGTTTTTCTGGACTTCTCCTTTCCTGTTTGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGTGTAGATTAGTTTTTCTGGACTTCTCCTTTCCTGTTTGCCAG  650

seq1  AGGGTTCCATCTGATGACAGTCTCCAGCAGTCTTTAATCTGATGTCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCCATCTGATGACAGTCTCCAGCAGTCTTTAATCTGATGTCTCTG  700

seq1  CAATTCTATCCTTAGCCAGAAACACAGTTGTCCTTGAATTCCAAAGGCTT  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAATTCTATCCTTAGCCAGAAACACAGTTGTCCTTGAATTCC-AAGGCTT  749

seq1  GGGGGAAGTTAAGAAACAACGCAAAGCCCTGCCATGGTGGTGTACACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAGTTAAGAAACAACGCAAAGCCCTGCCATGGTGGTGTACACCTT  799

seq1  TAGCCCCAGCACTTGGGAGGCAGAGGC-AGGCAGATTTCT  839
      |||||||||||||||||||||||| || || |||||||||
seq2  TAGCCCCAGCACTTGGGAGGCAGAAGCGAGTCAGATTTCT  839