BAC Information

Click to search

BAC

Clone NameB6Ng01-275L06
Chromosome16 (Build37)16 (Build37)
Map Location 79,993,525 - 79,993,68163,049,957 - 63,051,101
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePrss7, EG383172
Downstream gene1700066C05Rik, LOC621365, LOC100039724
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275L06.bB6Ng01-275L06.g
ACCGA076669GA076670
length3811,129
definitionB6Ng01-275L06.b B6Ng01-275L06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,993,525 - 79,993,681)(63,049,957 - 63,051,101)
sequence
ccaacatactgaggaacattcggaacttataggcatttttcatgatttcc
atgggaaatgtcagttgttcccttggcaatctcttactgtgaatgacacc
tattaatagcagctatttctactgttttaaattttatgtatgttatttaa
aatatataattcttcccttccttttcctcactccaaatccttctgtgctt
ccccatatccctctcaattgatggctgccttttctttatttctgtacatg
tgtgtgcacgtgaatgtgcatgcatacgtgcatgcgtgcgtgcgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaatacaacccgat
gaatctgtttttgttcatttttgtgtgtata

gaattcaatcatcatcctgtgtattgtgatataacccagtaaatgaaacc
aaattagttatgctattagccgagagcccagtcctcctgaaacctctttc
caacagcagcattttctttgcgtctaggtttggttagggtagtgatgggc
acctgtatcccatacattcatactcacttgagtctctcctgcctttgaag
ctctgcattttacttggacagatctatgttattttgagggtcttcacaca
ggaatgacttgagggtaaagatgaagtgtgagatgggtggccctatacta
ataggcatgacataatcacttttcatttcaagtaagagctgaaattgatt
ttagtgcactcactttaactgacaaaacaaacaaacaaacaaacaacaac
aaaaactttcaatgttctgacttatgcaactactatctcacatgactgag
ccaatctatttctgatttggagacttcctgactgcttcagtgtaataaaa
gcatctccactctttcccacctttaggagtggagttaaggtcattgtact
tttggcacaagaggtactatttcttttgttgtaaacatacatgagtaggt
gaaaatatagcgagcatttcccaggaaatgctagcctgttgtttccaggg
caccttttctcatacgtaattcctttggcatcactgggtttagggcaact
ctatcatctatagaagattgcaaagaaatccaggtgagttttgcttagaa
gaaaacattctcttttgcatactgagaagaagcaagttgtcttctactct
gagcaagatatgattctgacagtgttctctaggcaaacatacttgaaaaa
tttggtagacatatttaggccaatgtgtacttttgtaagatgcacagaaa
tgctaaagactcacagaaaatcatctttaaagaggtgttttttgttgttg
ctgttgtcgttgttaagtaaggacattgaggaaaatttgaaagacagaaa
acagagacctccatggtggagcaaaggtgtttgtatgttggatgtgatct
ggatggtctctaaagatacataaggtttaaggaatggcaattctcgtgaa
taagacttaggattgagacctaatcgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_79993525_79993681
seq2: B6Ng01-275L06.b_295_389 (reverse)

seq1  TCACACACACACACACACACACACACACACACACACATACACACACACAC  50
      ||||||||||||||||||||||||||||||||||||  |||||||| |||
seq2  TCACACACACACACACACACACACACACACACACAC--ACACACACGCAC  48

seq1  ACACACATACACACACACACACACACACACACGCACACACATGCACACAC  100
       ||| ||| |||  |  ||  ||||  |||  ||||||||||| |||   
seq2  GCACGCATGCACGTATGCATGCACATTCACGTGCACACACATGTACA---  95

seq1  ACACATGCACACACACATGCACACACACATACACACATGCACACACACAC  150
                                                        
seq2  --------------------------------------------------  95

seq1  ATGTACA  157
             
seq2  -------  95


seq1: chr16_63049957_63051101
seq2: B6Ng01-275L06.g_64_1192

seq1  GAATTCAATCATCATCCTGTGTATTGTGATATAACCCAGTAAATGAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCATCATCCTGTGTATTGTGATATAACCCAGTAAATGAAACC  50

seq1  AAATTAGTTATGCTATTAGCCGAGAGCCCAGTCCTCCTGAAACCTCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTTATGCTATTAGCCGAGAGCCCAGTCCTCCTGAAACCTCTTTC  100

seq1  CAACAGCAGCATTTTCTTTGCGTCTAGGTTTGGTTAGGGTAGTGATGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCAGCATTTTCTTTGCGTCTAGGTTTGGTTAGGGTAGTGATGGGC  150

seq1  ACCTGTATCCCATACATTCATACTCACTTGAGTCTCTCCTGCCTTTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTATCCCATACATTCATACTCACTTGAGTCTCTCCTGCCTTTGAAG  200

seq1  CTCTGCATTTTACTTGGACAGATCTATGTTATTTTGAGGGTCTTCACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCATTTTACTTGGACAGATCTATGTTATTTTGAGGGTCTTCACACA  250

seq1  GGAATGACTTGAGGGTAAAGATGAAGTGTGAGATGGGTGGCCCTATACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGACTTGAGGGTAAAGATGAAGTGTGAGATGGGTGGCCCTATACTA  300

seq1  ATAGGCATGACATAATCACTTTTCATTTCAAGTAAGAGCTGAAATTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCATGACATAATCACTTTTCATTTCAAGTAAGAGCTGAAATTGATT  350

seq1  TTAGTGCACTCACTTTAACTGACAAAACAAACAAACAAACAAACAACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCACTCACTTTAACTGACAAAACAAACAAACAAACAAACAACAAC  400

seq1  AAAAACTTTCAATGTTCTGACTTATGCAACTACTATCTCACATGACTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTTCAATGTTCTGACTTATGCAACTACTATCTCACATGACTGAG  450

seq1  CCAATCTATTTCTGATTTGGAGACTTCCTGACTGCTTCAGTGTAATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTATTTCTGATTTGGAGACTTCCTGACTGCTTCAGTGTAATAAAA  500

seq1  GCATCTCCACTCTTTCCCACCTTTAGGAGTGGAGTTAAGGTCATTGTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCCACTCTTTCCCACCTTTAGGAGTGGAGTTAAGGTCATTGTACT  550

seq1  TTTGGCACAAGAGGTACTATTTCTTTTGTTGTAAACATACATGAGTAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCACAAGAGGTACTATTTCTTTTGTTGTAAACATACATGAGTAGGT  600

seq1  GAAAATATAGCGAGCATTTCCCAGGAAATGCTAGCCTGTTGTTTCCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATAGCGAGCATTTCCCAGGAAATGCTAGCCTGTTGTTTCCAGGG  650

seq1  CACCTTTTCTCATACGTAATTCCTTTGGCATCACTGGGTTTAGGGCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTTCTCATACGTAATTCCTTTGGCATCACTGGGTTTAGGGCAACT  700

seq1  CTATCATCTATAGAAGATTGCAAAGAAATCCAGGTGAGTTTTGCTTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATCTATAGAAGATTGCAAAGAAATCCAGGTGAGTTTTGCTTAGAA  750

seq1  GAAAACATTCTCTTTTGCATACTGAGAAGAAGCAAGTTGTCTTCTACTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATTCTCTTTTGCATACTGAGAAGAAGCAAGTTGTCTTCTACTCT  800

seq1  GAGCAAGATATGATTCTGACAGTGTTCTCTAGGCAAACATACTTGAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGATATGATTCTGACAGTGTTCTCTAGGCAAACATACTTGAAAAA  850

seq1  TTTGGTAGACATATTTAGGCCAATGTGTACTTTTGTAAGATGCACAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAGACATATTTAGGCCAATGTGTACTTTTGTAAGATGCACAGAAA  900

seq1  TGCTAAAGACTCACAGAAAATCATCTTTAAAGAGGTGTTTTTTGTTGTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAGACTCACAGAAAATCATCTTTAAAGAGGTGTTTTTTGTTGTTG  950

seq1  CTGTTGTCGTTGTTTAAAGTTAAGGACAATTTGAGGAAAATTTGAAAAGA  1000
      ||||||||||||||  ||| ||||||||  |||||||||||||||||   
seq2  CTGTTGTCGTTGTT--AAG-TAAGGACA--TTGAGGAAAATTTGAAA--G  993

seq1  ACAGAAAAACAGAAGAACCTCCAATGGTGGAGGCAAAGGTGTTTGTATGG  1050
      |||| ||||||||   |||||| |||||||| ||||||||||||||||| 
seq2  ACAG-AAAACAGA--GACCTCC-ATGGTGGA-GCAAAGGTGTTTGTATG-  1037

seq1  TTTGGATGTGATCTGAATGTTCTTCTAAAGATACATA--GGTTAAAGAAT  1098
       |||||||||||||| ||| || ||||||||||||||  | |||| ||||
seq2  -TTGGATGTGATCTGGATGGTC-TCTAAAGATACATAAGGTTTAAGGAAT  1085

seq1  GGAAATCCTCGTGATAAAGAATTAAGAGATTGAGAACTTTATCGGGT  1145
      || ||| |||||||  |||| |||   ||||||| || | |||||||
seq2  GGCAATTCTCGTGAATAAGACTTA--GGATTGAG-ACCTAATCGGGT  1129


| Home | SequenceCutter | Blast | Download |