BAC Information

Click to search

BAC

Clone NameB6Ng01-276A11
Chromosome16 (Build37)3 (Build37)
Map Location 66,410,865 - 66,412,026122,221,480 - 122,221,536
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
Downstream geneCadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276A11.bB6Ng01-276A11.g
ACCGA076909GA076910
length1,155469
definitionB6Ng01-276A11.b B6Ng01-276A11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,410,865 - 66,412,026)(122,221,480 - 122,221,536)
sequence
gaattcactcaaaggagctttattaccaaatctcctctcaaattttatca
ccagagaattttttttcaaactttgtgatgattcctaacaaggatataat
ttcaaaatatgtaacagtgctatagtgtacttaaaattaattattaaaat
ttatttaaatttattactaaaaaagcctactatagatcatgagctagaat
ctttttctagtcagttcggtttaactggatacatcataaattatacttat
aaaagactgtattgcaaaaagaaattgcaatgtagaaagttttcattatc
ctgcttcagcaccaattggtaattttttagctgagtggccaataaaagtg
acattctggaaacttattaattttaatgacattatctgtgtatttgaatc
atcttactctctgctgttagtgcagaaagctccataatcccatactttac
atttctttccccatgataattgtacatattgtcctacctcttagtcccat
tctttatattacttcatagttttgaaccaggagatgtcttcaaagtggct
gaagttggcataaagggagcaatgtcaagggaaagtacctgtctctttct
aaccaagggatggagtttctattatggcttccatattaaatttgcccatt
aattaactcctcataaggtgcttttaaaatggctgttgaaagttccagtt
gtccatatccacatgtttatatccttcagcaacaaaaaatttctaagact
gaatgtattgtcgatcctgtgtttgccaagctatttgtctcataagttgg
ctaagatgattcaatagtgagcagatagaaagggagttaacagaacttga
taatttctaaatctggtataaagacaataaccgccaaataattttgtctg
gtttgaatgactttaccaatgttcgtctcctttttctttagaaagaaata
taaattgcaacatttcattctctcttagccttccattacaataataaaat
actaagacaaaggacataaattaactagtttttcccttctagttcagtaa
gggttgttggaataaaaatgtcccataggttcataaagggagtgcactat
agaaggtgtggcttgttaacgtagaattgttctttgttggaggaagtgtt
cacta

tctttaaaagaatagtgtaggggttcgtgttgatgctaaggtcctcttct
ccaattggttcttgaaccattaagatgttagtggctaatgagctgggcca
aatagatgggacttccaggtccccacaggcaagctagcaaatgcaaggaa
gagaggaatttcaccatgcttcagagagagaaaaggtgaccgaccagcca
tgtgaggtctcaggtggagcagccaatggatgtttccccaggtgggacat
tagaaacacaactaaagctgagggcagttttgggttgctgaacaagaagg
taactgagcaactaaagttgagggcagcatttagggtgctgagctaaaaa
tattgggaagggcatgttagccacaggagattagaagcagctagcaactg
agccctaaagctcagttgaaaaataagttagtgtgtatgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66410865_66412026
seq2: B6Ng01-276A11.b_44_1198

seq1  GAATTCACTCAAAGGAGCTTTATTACCAAATCTCCTCTCAAATTTTATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAAAGGAGCTTTATTACCAAATCTCCTCTCAAATTTTATCA  50

seq1  CCAGAGAATTTTTTTTCAAACTTTGTGATGATTCCTAACAAGGATATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAATTTTTTTTCAAACTTTGTGATGATTCCTAACAAGGATATAAT  100

seq1  TTCAAAATATGTAACAGTGCTATAGTGTACTTAAAATTAATTATTAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATATGTAACAGTGCTATAGTGTACTTAAAATTAATTATTAAAAT  150

seq1  TTATTTAAATTTATTACTAAAAAAGCCTACTATAGATCATGAGCTAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAATTTATTACTAAAAAAGCCTACTATAGATCATGAGCTAGAAT  200

seq1  CTTTTTCTAGTCAGTTCGGTTTAACTGGATACATCATAAATTATACTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTAGTCAGTTCGGTTTAACTGGATACATCATAAATTATACTTAT  250

seq1  AAAAGACTGTATTGCAAAAAGAAATTGCAATGTAGAAAGTTTTCATTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTGTATTGCAAAAAGAAATTGCAATGTAGAAAGTTTTCATTATC  300

seq1  CTGCTTCAGCACCAATTGGTAATTTTTTAGCTGAGTGGCCAATAAAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCAGCACCAATTGGTAATTTTTTAGCTGAGTGGCCAATAAAAGTG  350

seq1  ACATTCTGGAAACTTATTAATTTTAATGACATTATCTGTGTATTTGAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGGAAACTTATTAATTTTAATGACATTATCTGTGTATTTGAATC  400

seq1  ATCTTACTCTCTGCTGTTAGTGCAGAAAGCTCCATAATCCCATACTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACTCTCTGCTGTTAGTGCAGAAAGCTCCATAATCCCATACTTTAC  450

seq1  ATTTCTTTCCCCATGATAATTGTACATATTGTCCTACCTCTTAGTCCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTCCCCATGATAATTGTACATATTGTCCTACCTCTTAGTCCCAT  500

seq1  TCTTTATATTACTTCATAGTTTTGAACCAGGAGATGTCTTCAAAGTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATATTACTTCATAGTTTTGAACCAGGAGATGTCTTCAAAGTGGCT  550

seq1  GAAGTTGGCATAAAGGGAGCAATGTCAAGGGAAAGTACCTGTCTCTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGGCATAAAGGGAGCAATGTCAAGGGAAAGTACCTGTCTCTTTCT  600

seq1  AACCAAGGGATGGAGTTTCTATTATGGCTTCCATATTAAATTTGCCCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGGGATGGAGTTTCTATTATGGCTTCCATATTAAATTTGCCCATT  650

seq1  AATTAACTCCTCATAAGGTGCTTTTAAAATGGCTGTTGAAAGTTCCAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTCCTCATAAGGTGCTTTTAAAATGGCTGTTGAAAGTTCCAGTT  700

seq1  GTCCATATCCACATGTTTATATCCTTCAGCAACAAAAAATTTCTAAGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATATCCACATGTTTATATCCTTCAGCAACAAAAAATTTCTAAGACT  750

seq1  GAATGTATTGTCGATCCTGTGTTTGCCAAGCTATTTGTCTCATAAGTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTATTGTCGATCCTGTGTTTGCCAAGCTATTTGTCTCATAAGTTGG  800

seq1  CTAAGATGATTCAATAGTGAGCAGATAG-AAGGGAGTTAACAGAACTTGA  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTAAGATGATTCAATAGTGAGCAGATAGAAAGGGAGTTAACAGAACTTGA  850

seq1  TAATTTCTAAATCTGGTATAAAGACAATAACCGCCAAATAATTTTGTCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTAAATCTGGTATAAAGACAATAACCGCCAAATAATTTTGTCTG  900

seq1  GTTTGAATGACTTTACCAATGTTCGTCTCCTTTTTCTTTAGAAAGAAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTTGAATGACTTTACCAATGTTCGTCTCCTTTTTCTTTAGAAAG-AAAT  949

seq1  ATAAATTGCAACATTTCATTCTCTCTTAGCCTTCCATTACAATAATAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTGCAACATTTCATTCTCTCTTAGCCTTCCATTACAATAATAAAA  999

seq1  TACTAAAGACCAAAGGACATAAAATTAACTAGTTTTTTCCCTTCTAGTTC  1049
      |||| |||| |||||||||| ||||||||||| |||||||||||||||| 
seq2  TACT-AAGA-CAAAGGACAT-AAATTAACTAG-TTTTTCCCTTCTAGTT-  1044

seq1  CAGT-AGGGTTGTTTGAATAAAAATTGTCCCCATAGGTTCATAA--GGAG  1096
      |||| ||||||||| ||||||||| ||| |||||||||||||||  ||||
seq2  CAGTAAGGGTTGTTGGAATAAAAA-TGT-CCCATAGGTTCATAAAGGGAG  1092

seq1  TGGCACTATTAGAAGGTGTGGCCTTGTTACAGTAGATGTG-TCTTTGTTG  1145
      | |||||| |||||||||||| |||||||  |||||  || |||||||||
seq2  T-GCACTA-TAGAAGGTGTGG-CTTGTTAACGTAGAATTGTTCTTTGTTG  1139

seq1  AAGGAAGTGTGTCACTA  1162
       ||||||||| ||||||
seq2  GAGGAAGTGT-TCACTA  1155


seq1: chr3_122221480_122221536
seq2: B6Ng01-276A11.g_356_540 (reverse)

seq1  CACACACACACACACACACACACACACACACATGCACA--GACTTCTTGT  48
      ||||||||||||||||||||||||||||||||| ||||   |||| || |
seq2  CACACACACACACACACACACACACACACACATACACACTAACTTATTTT  50

seq1  TGGCAGCAA-----------------------------------------  57
      |     |||                                         
seq2  T-----CAACTGAGCTTTAGGGCTCAGTTGCTAGCTGCTTCTAATCTCCT  95

seq1  --------------------------------------------------  57
                                                        
seq2  GTGGCTAACATGCCCTTCCCAATATTTTTAGCTCAGCACCCTAAATGCTG  145

seq1  ----------------------------------------  57
                                              
seq2  CCCTCAACTTTAGTTGCTCAGTTACCTTCTTGTTCAGCAA  185


| Home | SequenceCutter | Blast | Download |