BAC Information

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BAC

Clone NameB6Ng01-276E10
Chromosome16 (Build37)
Map Location 6,293,365 - 6,399,664
singlet/doubletdoublet
Overlap geneA2bp1
Upstream geneLOC100042436, LOC100042445
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276E10.bB6Ng01-276E10.g
ACCGA077098GA077099
length5811,165
definitionB6Ng01-276E10.b B6Ng01-276E10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,399,078 - 6,399,664)(6,293,365 - 6,294,526)
sequence
taggtaccaggcatagtgccttatgcctataatccctacaatggggacag
aataagatcctatttaaaaagaaaggactgaagtagaaaaaaagacggga
aaaagggaaggggaggggaggggaaaggaagaaaaggacaagcaatgtct
aactcctgtaggtgactaagctctttgccagaagcgggtggagggttcca
ggttcagtcactctgcagccttcatctttatgggtccatgcctgacactg
gtaacgctctaagcaacacactttagttgaatgaggatgccagaacctct
tttctatacaaaagaagcatggcactgatcccagttgaatattgatgtat
ctttgaaaatgggagttagggtcctggaaatacaatgatcactaaagtag
tcccaagccaatggctttcaggttcttgtcttacagatttgaacaatgaa
attaattgacaaaaagagtgagttgtagagagattttatagattcatagg
taggagcttaagaggagataggtaaatagatagatagatagatagataga
tagataggtaaatagatagatagatagatag

gaattcacaatcacggggcaggagaagctgtagctggagcagactgatgc
acgagggagcgaggcaggccaggagactgatattgattcggaagtagaaa
agcacccacccaactccactacaaacctacagcgagacgcaaatggggta
gacagagccctacaaaccctggagacaaacaggccatttgcaagagctat
tctgaaatttcaggtcatcttaaggagataaagaaagacagctaggttgt
ctctagagtgatttcttagaagctcactgtcctgccttgcctggtttagc
cagactcctgatttcccagggcatgggcttatatcatcatcccagaagtc
cttctgtggacttcctggcacaggcttccctccagcgttttgctcttctg
gttttcttccttttgaggaactgggtttctgtgtctccaatgcagacaat
tggtagatcattacagtgtgtacatattacagattctctctgccaatact
gcagcaggctggcacaggggcaatccactgtggaatgacacggaaacccg
aaaacaattggagagagacttctacataaatcttttcaagtcttctattt
ccatattacatcccaggaagggagcatctggctgccttgataaatgtgcc
ttctcttgtggaggccctcttggcaagcatccgcaggatcttaagtattt
atcaatgagtatttcttcattatcatatgcatcttatatttacattattt
tgcttttcagaaagaaaggtaaactgcagtctaaggaaaagcttgatgca
aacatgagtagggagaaccatggcaggagaattactgtgggttcaaggct
aattggaggtcttcaaggctagcctgagcgccatgatgaattctaaagtt
agtctgggctacaatgtgagacttctctctcaacaggaaatgggacaagc
atgatgtaaaggtatctttaattgtcaacatgacacattctacagtcacc
tgggggagatctcagtgggttattatttttatgtgtatatctacagccat
gcctgagtgaggattgtctgcattaggtgaagacccagccctccactgtg
atgacccaatcctctagctgttggatcttgaactgtataagagccggaat
taatgtagacttgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_6399078_6399664
seq2: B6Ng01-276E10.b_48_634 (reverse)

seq1  CTATCTATCTATCTATCTATTTACCTATCTATCTATCTATCTATCTATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTATTTACCTATCTATCTATCTATCTATCTATCT  50

seq1  ATCTATTTACCTATCTCCTCTTAAGCTCCTACCTATGAATCTATAAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTACCTATCTCCTCTTAAGCTCCTACCTATGAATCTATAAAATC  100

seq1  TCTCTACAACTCACTCTTTTTGTCAATTAATTTCATTGTTCAAATCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACAACTCACTCTTTTTGTCAATTAATTTCATTGTTCAAATCTGTA  150

seq1  AGACAAGAACCTGAAAGCCATTGGCTTGGGACTACTTTAGTGATCATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGAACCTGAAAGCCATTGGCTTGGGACTACTTTAGTGATCATTGT  200

seq1  ATTTCCAGGACCCTAACTCCCATTTTCAAAGATACATCAATATTCAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGGACCCTAACTCCCATTTTCAAAGATACATCAATATTCAACTG  250

seq1  GGATCAGTGCCATGCTTCTTTTGTATAGAAAAGAGGTTCTGGCATCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGTGCCATGCTTCTTTTGTATAGAAAAGAGGTTCTGGCATCCTCA  300

seq1  TTCAACTAAAGTGTGTTGCTTAGAGCGTTACCAGTGTCAGGCATGGACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTAAAGTGTGTTGCTTAGAGCGTTACCAGTGTCAGGCATGGACCC  350

seq1  ATAAAGATGAAGGCTGCAGAGTGACTGAACCTGGAACCCTCCACCCGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATGAAGGCTGCAGAGTGACTGAACCTGGAACCCTCCACCCGCTT  400

seq1  CTGGCAAAGAGCTTAGTCACCTACAGGAGTTAGACATTGCTTGTCCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAAGAGCTTAGTCACCTACAGGAGTTAGACATTGCTTGTCCTTTT  450

seq1  CTTCCTTTCCCCTCCCCTCCCCTTCCCTTTTTCCCGTCTTTTTTTCTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTCCCCTCCCCTCCCCTTCCCTTTTTCCCGTCTTTTTTTCTACT  500

seq1  TCAGTCCTTTCTTTTTAAATAGGATCTTATTCTGTCCCCATTGTAGGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCTTTCTTTTTAAATAGGATCTTATTCTGTCCCCATTGTAGGGAT  550

seq1  TATAGGCATAAGGCACTATGCCTGGTACCTAGAATTC  587
      |||||||||||||||||||||||||||||||||||||
seq2  TATAGGCATAAGGCACTATGCCTGGTACCTAGAATTC  587


seq1: chr16_6293365_6294526
seq2: B6Ng01-276E10.g_68_1232

seq1  GAATTCACAATCACGGGGCAGGAGAAGCTGTAGCTGGAGCAGACTGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAATCACGGGGCAGGAGAAGCTGTAGCTGGAGCAGACTGATGC  50

seq1  ACGAGGGAGCGAGGCAGGCCAGGAGACTGATATTGATTCGGAAGTAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGGAGCGAGGCAGGCCAGGAGACTGATATTGATTCGGAAGTAGAAA  100

seq1  AGCACCCACCCAACTCCACTACAAACCTACAGCGAGACGCAAATGGGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCACCCAACTCCACTACAAACCTACAGCGAGACGCAAATGGGGTA  150

seq1  GACAGAGCCCTACAAACCCTGGAGACAAACAGGCCATTTGCAAGAGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGCCCTACAAACCCTGGAGACAAACAGGCCATTTGCAAGAGCTAT  200

seq1  TCTGAAATTTCAGGTCATCTTAAGGAGATAAAGAAAGACAGCTAGGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATTTCAGGTCATCTTAAGGAGATAAAGAAAGACAGCTAGGTTGT  250

seq1  CTCTAGAGTGATTTCTTAGAAGCTCACTGTCCTGCCTTGCCTGGTTTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGTGATTTCTTAGAAGCTCACTGTCCTGCCTTGCCTGGTTTAGC  300

seq1  CAGACTCCTGATTTCCCAGGGCATGGGCTTATATCATCATCCCAGAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCCTGATTTCCCAGGGCATGGGCTTATATCATCATCCCAGAAGTC  350

seq1  CTTCTGTGGACTTCCTGGCACAGGCTTCCCTCCAGCGTTTTGCTCTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGGACTTCCTGGCACAGGCTTCCCTCCAGCGTTTTGCTCTTCTG  400

seq1  GTTTTCTTCCTTTTGAGGAACTGGGTTTCTGTGTCTCCAATGCAGACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTCCTTTTGAGGAACTGGGTTTCTGTGTCTCCAATGCAGACAAT  450

seq1  TGGTAGATCATTACAGTGTGTACATATTACAGATTCTCTCTGCCAATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGATCATTACAGTGTGTACATATTACAGATTCTCTCTGCCAATACT  500

seq1  GCAGCAGGCTGGCACAGGGGCAATCCACTGTGGAATGACACGGAAACCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGGCTGGCACAGGGGCAATCCACTGTGGAATGACACGGAAACCCG  550

seq1  AAAACAATTGGAGAGAGACTTCTACATAAATCTTTTCAAGTCTTCTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATTGGAGAGAGACTTCTACATAAATCTTTTCAAGTCTTCTATTT  600

seq1  CCATATTACATCCCAGGAAGGGAGCATCTGGCTGCCTTGATAAATGTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTACATCCCAGGAAGGGAGCATCTGGCTGCCTTGATAAATGTGCC  650

seq1  TTCTCTTGTGGAGGCCCTCTTGGCAAGCATCCGCAGGATCTTAAGTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGTGGAGGCCCTCTTGGCAAGCATCCGCAGGATCTTAAGTATTT  700

seq1  ATCAATGAGTATTTCTTCATTATCATATGCATCTTATATTTACATTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGAGTATTTCTTCATTATCATATGCATCTTATATTTACATTATTT  750

seq1  TGCTTTTCAGGAAGAAAGGTAAACTGCAGTCTAAGGAAAAGCTTGATGCA  800
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCAGAAAGAAAGGTAAACTGCAGTCTAAGGAAAAGCTTGATGCA  800

seq1  AACATGAGTAGGGAGAACCATGGCAGGAGAATTACTGTGGGTTCAAGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAGTAGGGAGAACCATGGCAGGAGAATTACTGTGGGTTCAAGGCT  850

seq1  AATTGGAGGTCTTCAAGGCTAGCCTGAGCGCCATGATGAATTCT-AAGTT  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATTGGAGGTCTTCAAGGCTAGCCTGAGCGCCATGATGAATTCTAAAGTT  900

seq1  AGTCTGGGCTACAATGTGAGAC-TCTCTCTCAACAGGAAAATGGGACAAA  948
      |||||||||||||||||||||| |||||||||||||| ||||||||| ||
seq2  AGTCTGGGCTACAATGTGAGACTTCTCTCTCAACAGG-AAATGGGAC-AA  948

seq1  GCATGATGTAAAGGTTATCTTTAATTGTCAACATGACACAATCTACAGTC  998
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  GCATGATGTAAAGG-TATCTTTAATTGTCAACATGACACATTCTACAGTC  997

seq1  ACCTGGGGGAGAATCTCAGTGGG-TATTATTTTATTGTGTATAATCTACA  1047
      ||||||||||| ||||||||||| |||||||||  ||||||| |||||||
seq2  ACCTGGGGGAG-ATCTCAGTGGGTTATTATTTTTATGTGTAT-ATCTACA  1045

seq1  GCCATGCCTGAGTGAGGA-TGTCTGCATTAAGTTGAAGACCCAGCC--TC  1094
      |||||||||||||||||| |||||||||| || |||||||||||||   |
seq2  GCCATGCCTGAGTGAGGATTGTCTGCATT-AGGTGAAGACCCAGCCCTCC  1094

seq1  ACTGTGGATGACCCCATTCTCTAAGCTG-TGGGTCTTGAACTGTATAAGA  1143
      ||||| |||||||| || |||| ||||| ||| |||||||||||||||||
seq2  ACTGT-GATGACCCAATCCTCT-AGCTGTTGGATCTTGAACTGTATAAGA  1142

seq1  GCAG--ATAAATGTAG--TTGAG  1162
      || |  || |||||||  |||||
seq2  GCCGGAATTAATGTAGACTTGAG  1165


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