BAC Information

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BAC

Clone NameB6Ng01-276H13
Chromosome16 (Build37)
Map Location 60,542,202 - 60,701,162
singlet/doubletdoublet
Overlap geneEpha6, EG668168, LOC668170
Upstream geneBC043118, LOC672884, Arl6, LOC100043804
Downstream geneLOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276H13.bB6Ng01-276H13.g
ACCGA077245GA077246
length1,174665
definitionB6Ng01-276H13.b B6Ng01-276H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,542,202 - 60,543,383)(60,700,498 - 60,701,162)
sequence
gaattccaaagataaaacagatagaaattcatcccaggagtcaacaaaat
gcgagataaatattttctgcctgtaaaatgctctctcaaaaatttcaagt
acattaaaggtctactaaatttgactagagagaaataataataaattaaa
tcctatgagaagaagacatagataaaaggcagacttacatcaccaggaat
gtattcaaaggacaatcttaattatgttgtcatcattttgtaaaatactt
ggaaacaatttgaaaggatttattttcaaattaattaaagatcaatcaaa
ataacttattaagcagggcactggtggcacacacttttaatcgctgcact
tgggaggcaaaggcaggcagatttctgagtttgaggccagcctggtctac
agagttccaggacattcagggctacatagagaaaccctgtctccattcct
ccccccccaaaaaaataaaaacttattaatgtcaattattttttttaatt
agagttccgtaggggctgagcctgcttccattctccccttttccctctct
cctcccctctctcccctttcacctcccctctctccctctctttttcataa
aattaatccaagaaggaatggaagaatatagttagtggaaacgagtgtag
ctgaaaactgcatatttggatagaaatacgttccaaagtactgaaagagc
agttcccaatatggagaaaagtaggtacttcatatgttaattctcagtct
gtggagaagttgctcatgtgcctttgacatatgatctattgaacatagca
gacaaagtagtcacaatgaaatatgaaagcaaatagatattgttttgaac
ataggatgagcagtgagaagagacacaccttttctcctttctggagtctc
ttttcattttccatactctacctgttcctttttagccaacaagacccttc
agctgtttgctctcatgtaaaaaatgttcaaatgaccctttcttatcagc
agctctaactgaatgcatcttatgaagaaaaatattatactaattagctt
gtgattcttatgaatactcatgatctagtcctacttctggaacacttatt
tcaaaaaacattagtaatgtgattgggtgactattctagtatccaatttg
tgatagcacttggcaattttcagg

gaattcaaatcacaatctatattgcaatataattaaatatgccttttcta
ttgatgagatcttaaaatcagatttaattgatttatttatacatgtacta
cataaaataggaatgctataggagctttagttgagctatacatcataagc
atgaaacattgcctgtaatgatataaaatgcataccacaataattcaact
ttgagataaacagcatttttatgctcacttacaagaaatgtttgttttta
tcataatgatgtgttggtttaatttatagagtattcatatactcattcac
aattgaaagttacactggggtcattttcaggaataagagaagttcactgt
actcttttcgcaaataaaacagaaaaaataaaaaaagactctgtagcctg
cacactaaaatgtgtttgcatacaatcataatgaagaaatctgtggtagt
tataatcaagtgaaaatcacttcctgttttacacttttaaatcaaagtaa
atcagaactgttggcatcagaaaaagacagtggtcactgctgtgtctgac
ctgaactggagctagccacttctagcaaagaagtgatatctttctcagat
ttgctgctttctctaccctcagttgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_60542202_60543383
seq2: B6Ng01-276H13.b_44_1217

seq1  GAATTCCAAAGATAAAACAGATAGAAATTCATCCCAGGAGTCAACAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGATAAAACAGATAGAAATTCATCCCAGGAGTCAACAAAAT  50

seq1  GCGAGATAAATATTTTCTGCCTGTAAAATGCTCTCTCAAAAATTTCAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGATAAATATTTTCTGCCTGTAAAATGCTCTCTCAAAAATTTCAAGT  100

seq1  ACATTAAAGGTCTACTAAATTTGACTAGAGAGAAATAATAATAAATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAAGGTCTACTAAATTTGACTAGAGAGAAATAATAATAAATTAAA  150

seq1  TCCTATGAGAAGAAGACATAGATAAAAGGCAGACTTACATCACCAGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGAGAAGAAGACATAGATAAAAGGCAGACTTACATCACCAGGAAT  200

seq1  GTATTCAAAGGACAATCTTAATTATGTTGTCATCATTTTGTAAAATACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAAAGGACAATCTTAATTATGTTGTCATCATTTTGTAAAATACTT  250

seq1  GGAAACAATTTGAAAGGATTTATTTTCAAATTAATTAAAGATCAATCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAATTTGAAAGGATTTATTTTCAAATTAATTAAAGATCAATCAAA  300

seq1  ATAACTTATTAAGCAGGGCACTGGTGGCACACACTTTTAATCGCTGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTATTAAGCAGGGCACTGGTGGCACACACTTTTAATCGCTGCACT  350

seq1  TGGGAGGCAAAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAAAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTAC  400

seq1  AGAGTTCCAGGACATTCAGGGCTACATAGAGAAACCCTGTCTCCATTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCCAGGACATTCAGGGCTACATAGAGAAACCCTGTCTCCATTCCT  450

seq1  CCCCCCCCAAAAAAATAAAAACTTATTAATGTCAATTATTTTTTTTAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCAAAAAAATAAAAACTTATTAATGTCAATTATTTTTTTTAATT  500

seq1  AGAGTTCCGTAGGGGCTGAGCCTGCTTCCATTCTCCCCTTTTCCCTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCCGTAGGGGCTGAGCCTGCTTCCATTCTCCCCTTTTCCCTCTCT  550

seq1  CCTCCCCTCTCTCCCCTTTCACCTCCCCTCTCTCCCTCTCTTTTTCATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTCTCTCCCCTTTCACCTCCCCTCTCTCCCTCTCTTTTTCATAA  600

seq1  AATTAATCCAAGAAGGAATGGAAGAATATAGTTAGTGGAAACGAGTGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATCCAAGAAGGAATGGAAGAATATAGTTAGTGGAAACGAGTGTAG  650

seq1  CTGAAAACTGCATATTTGGATAGAAATACGTTCCAAAGTACTGAAAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAACTGCATATTTGGATAGAAATACGTTCCAAAGTACTGAAAGAGC  700

seq1  AGTTCCCAATATGGAGAAAAGTAGGTACTTCATATGTTAATTCTCAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCAATATGGAGAAAAGTAGGTACTTCATATGTTAATTCTCAGTCT  750

seq1  GTGGAGAAGTTGCTCATGTGCCTTTGACATATGATCTATTGAACATAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAAGTTGCTCATGTGCCTTTGACATATGATCTATTGAACATAGCA  800

seq1  GACAAAGTAGTCACAATGAAATATGAAAGCAAATAGATATTGTTTTGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGTAGTCACAATGAAATATGAAAGCAAATAGATATTGTTTTGAAC  850

seq1  ATAGGATGAGCAGTGAGAAGAGACACACCTTTTCTCCTTTCTGGAGTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATGAGCAGTGAGAAGAGACACACCTTTTCTCCTTTCTGGAGTCTC  900

seq1  TTTTCATTTTCCATACTCTACCTGTTCCTTTTTAGCCAACAGGACCCTCA  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||  
seq2  TTTTCATTTTCCATACTCTACCTGTTCCTTTTTAGCCAACAAGACCCTTC  950

seq1  GGCTGTTTGCTCTCATGTAAAAAATGTTCAAATGACCCTTTCTTATCAGC  1000
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTGCTCTCATGTAAAAAATGTTCAAATGACCCTTTCTTATCAGC  1000

seq1  AGCTCT-ACTGAATGCATCTTATGAAG-AAAATATATTACTAAATTAGCT  1048
      |||||| |||||||||||||||||||| |||||||  |||| ||||||||
seq2  AGCTCTAACTGAATGCATCTTATGAAGAAAAATATTATACT-AATTAGCT  1049

seq1  TGTTGATTTCTTTATGAATACTCATGATCTAGTCTTACTTCTGGAACACT  1098
      || |||||   ||||||||||||||||||||||| |||||||||||||||
seq2  TG-TGATT--CTTATGAATACTCATGATCTAGTCCTACTTCTGGAACACT  1096

seq1  ATTTAAAAAAAACATAAGTTAAATGTGAATTGTGTGAACTATTCTAGTAT  1148
        ||  ||||||||| |||  |||||| |||| ||| |||||||||||||
seq2  TATTTCAAAAAACATTAGT--AATGTG-ATTGGGTG-ACTATTCTAGTAT  1142

seq1  CATTTTGGTGATAGCAACTTGGGAAATTTTCAGG  1182
      |   || |||||||| |||| || ||||||||||
seq2  CCAATTTGTGATAGC-ACTT-GGCAATTTTCAGG  1174


seq1: chr16_60700498_60701162
seq2: B6Ng01-276H13.g_66_730 (reverse)

seq1  CACTCACACACACACACACACACACACACACACACACACACAACTGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACACACACACACACACACACACACACACACACACACAACTGAGGG  50

seq1  TAGAGAAAGCAGCAAATCTGAGAAAGATATCACTTCTTTGCTAGAAGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAGCAGCAAATCTGAGAAAGATATCACTTCTTTGCTAGAAGTGG  100

seq1  CTAGCTCCAGTTCAGGTCAGACACAGCAGTGACCACTGTCTTTTTCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCCAGTTCAGGTCAGACACAGCAGTGACCACTGTCTTTTTCTGAT  150

seq1  GCCAACAGTTCTGATTTACTTTGATTTAAAAGTGTAAAACAGGAAGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAGTTCTGATTTACTTTGATTTAAAAGTGTAAAACAGGAAGTGAT  200

seq1  TTTCACTTGATTATAACTACCACAGATTTCTTCATTATGATTGTATGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTGATTATAACTACCACAGATTTCTTCATTATGATTGTATGCAA  250

seq1  ACACATTTTAGTGTGCAGGCTACAGAGTCTTTTTTTATTTTTTCTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTTAGTGTGCAGGCTACAGAGTCTTTTTTTATTTTTTCTGTTTT  300

seq1  ATTTGCGAAAAGAGTACAGTGAACTTCTCTTATTCCTGAAAATGACCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCGAAAAGAGTACAGTGAACTTCTCTTATTCCTGAAAATGACCCCA  350

seq1  GTGTAACTTTCAATTGTGAATGAGTATATGAATACTCTATAAATTAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACTTTCAATTGTGAATGAGTATATGAATACTCTATAAATTAAACC  400

seq1  AACACATCATTATGATAAAAACAAACATTTCTTGTAAGTGAGCATAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATCATTATGATAAAAACAAACATTTCTTGTAAGTGAGCATAAAAA  450

seq1  TGCTGTTTATCTCAAAGTTGAATTATTGTGGTATGCATTTTATATCATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTATCTCAAAGTTGAATTATTGTGGTATGCATTTTATATCATTA  500

seq1  CAGGCAATGTTTCATGCTTATGATGTATAGCTCAACTAAAGCTCCTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAATGTTTCATGCTTATGATGTATAGCTCAACTAAAGCTCCTATAG  550

seq1  CATTCCTATTTTATGTAGTACATGTATAAATAAATCAATTAAATCTGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTATTTTATGTAGTACATGTATAAATAAATCAATTAAATCTGATT  600

seq1  TTAAGATCTCATCAATAGAAAAGGCATATTTAATTATATTGCAATATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATCTCATCAATAGAAAAGGCATATTTAATTATATTGCAATATAGA  650

seq1  TTGTGATTTGAATTC  665
      |||||||||||||||
seq2  TTGTGATTTGAATTC  665


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