BAC Information

Click to search

BAC

Clone NameB6Ng01-276O06
Chromosome3 (Build37)16 (Build37)
Map Location 124,516,715 - 124,517,83579,028,004 - 79,028,392
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
Downstream geneLOC668820, Ndst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276O06.bB6Ng01-276O06.g
ACCGA077555GA077556
length1,1181,085
definitionB6Ng01-276O06.b B6Ng01-276O06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(124,516,715 - 124,517,835)(79,028,004 - 79,028,392)
sequence
gaattcaatttgttcatcatgaacagaaagaactctccctgctgagccaa
cttgctgaccacctccatgatgagacccaaagtctggttcctgggaactc
atgtcaggtggttcacaatccctgatattcagctccagtggggctaaagc
cctctcagcttctctgggcacttttaagtattatgatgtatatataataa
taataaatcacaaacaaataataataaaagtataggtataaataccagat
atgaaatcttaatagggtggaaaatagaataaactctaaatatcagaatt
gctgaagttgaccagttgatcctgtgctttaatttttgtcatttaataag
tgacagcatattttaataccttcaatatagaccaaaccttggtgtcaaga
catgtacaggtggggatgctctgactatgcctgaatgactcccctaagtg
actgagcaagtagagcatattggtattagcgaagcagcactctgcaagaa
caagcaattaagcaagcctagactctttgcacctgtggcagtaccagttc
caaattcattaagcaggcatctgtatccagaaggaggtctgttaattttg
tgtacgctatcaacaccaaaactcatttatgctttgctacagtaaatagc
agagaaagattttaatgccaagcagctttaactactgggttttcttgttc
ttttggtttgtaatttcgcctactacatccagaactctgttaggttaagt
gaagcattttccaacagcatacacagtttatcacagactatctaccagca
tttatttttcaggttgatgtatttgattctgattccagataaaaaaaaat
tgtctcaaaagagagagcaagtctgaagcctcctaatcaagggctgtcta
gcctgctcaacaggcagagatccaggtagcctatcaaccatcactgtcat
ggccactcttccaaactctgctcaccaagtggcatctgctataatcttga
cattcccagaacttctctctttcaaaggaaagtgccagatcatggacttc
agcaggactatctagctgcaccacctgactcagagaacatgggttaacta
cttgtttgtcttcacata

gaattctctgtgaacaacacatgtgtattggtctgtcttacattgcatag
ttaagctgtatttgttgagactccatagagagaaatggattctggtggca
tgttatactttcttgccacttctgcagactgactgatagtgtgatgtcag
ctgagacaagacccgtagaagacatgtggtgcttacagggaagaaatagg
acctgatggacagttatggagaaagagcttggcttgctcatagagctagc
tgtgaaagcttgttggtctcacatctgctgatgtccaattctctgaaaga
ggcagagtagagaatttctcctggcattccttctgatccctcctgctgac
tcatgtagaggctgaggcctggctgtctctgttaggtagtaccacagctg
ctggttcttgtttgctatctttactctactaaattggactactgctgtat
ctgtaaagggattttgaatagatcgagctgccactactgacatgtgaact
gaactgtcaattttcagacaacacagacaagagttgcttcaaaaaacctt
tctaaacaggtccacttctcccatagtctttctttcccaccacctctggt
gggtggtaggctaaaagagaggttaaagcatttaaaaaccatgattgaaa
ataaggtttaaaaaaaaaagttacaatacaaaaccaatgtctttgcactc
acaaatgcatttatttgatatatttttccaaatgatacatctgaaatatt
ttcatacaaatatactaagataataattaaatattattattgccaaactt
aatactacaaccacatatttttcaaaagtatatttattgatgtttttaca
atgattaagaatcttaaaagaatatagttcgctaatattaaaaatccatt
gtaaaactgaattttttcataaactttatatatttctggaaaatgtcttc
acaggatgactcttcataatcttttttgtggacttaaagtacccaaggag
ctaaaggagtctgcatcctatagagacaacatatgaactacccagtaact
cccagagcttgtgtcctctagctgcataatgtagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_124516715_124517835
seq2: B6Ng01-276O06.b_48_1165

seq1  GAATTCAATTTGTTCATCATGAACAGAAAGAACTCTCCCTGCTGAGCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTGTTCATCATGAACAGAAAGAACTCTCCCTGCTGAGCCAA  50

seq1  CTTGCTGACCACCTCCATGATGAGACCCAAAGTCTGGTTCCTGGGAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGACCACCTCCATGATGAGACCCAAAGTCTGGTTCCTGGGAACTC  100

seq1  ATGTCAGGTGGTTCACAATCCCTGATATTCAGCTCCAGTGGGGCTAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGGTGGTTCACAATCCCTGATATTCAGCTCCAGTGGGGCTAAAGC  150

seq1  CCTCTCAGCTTCTCTGGGCACTTTTAAGTATTATGATGTATATATAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGCTTCTCTGGGCACTTTTAAGTATTATGATGTATATATAATAA  200

seq1  TAATAAATCACAAACAAATAATAATAAAAGTATAGGTATAAATACCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATCACAAACAAATAATAATAAAAGTATAGGTATAAATACCAGAT  250

seq1  ATGAAATCTTAATAGGGTGGAAAATAGAATAAACTCTAAATATCAGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCTTAATAGGGTGGAAAATAGAATAAACTCTAAATATCAGAATT  300

seq1  GCTGAAGTTGACCAGTTGATCCTGTGCTTTAATTTTTGTCATTTAATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGTTGACCAGTTGATCCTGTGCTTTAATTTTTGTCATTTAATAAG  350

seq1  TGACAGCATATTTTAATACCTTCAATATAGACCAAACCTTGGTGTCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCATATTTTAATACCTTCAATATAGACCAAACCTTGGTGTCAAGA  400

seq1  CATGTACAGGTGGGGATGCTCTGACTATGCCTGAATGACTCCCCTAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACAGGTGGGGATGCTCTGACTATGCCTGAATGACTCCCCTAAGTG  450

seq1  ACTGAGCAAGTAGAGCATATTGGTATTAGCGAAGCAGCACTCTGCAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCAAGTAGAGCATATTGGTATTAGCGAAGCAGCACTCTGCAAGAA  500

seq1  CAAGCAATTAAGCAAGCCTAGACTCTTTGCACCTGTGGCAGTACCAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAATTAAGCAAGCCTAGACTCTTTGCACCTGTGGCAGTACCAGTTC  550

seq1  CAAATTCATTAAGCAGGCATCTGTATCCAGAAGGAGGTCTGTTAATTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCATTAAGCAGGCATCTGTATCCAGAAGGAGGTCTGTTAATTTTG  600

seq1  TGTACGCTATCAACACCAAAACTCATTTATGCTTTGCTACAGTAAATAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACGCTATCAACACCAAAACTCATTTATGCTTTGCTACAGTAAATAGC  650

seq1  AGAGAAAGATTTTAATGCCAAGCAGCTTTAACTACTGGGTTTTCTTGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGATTTTAATGCCAAGCAGCTTTAACTACTGGGTTTTCTTGTTC  700

seq1  TTTTGGTTTGTAATTTCGCCTACTACATCCAGAACTCTGTTAGGTTAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTTGTAATTTCGCCTACTACATCCAGAACTCTGTTAGGTTAAGT  750

seq1  GAAGCATTTTCCAACAGCATACACAGTTTATCACAGACTATCTACCAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATTTTCCAACAGCATACACAGTTTATCACAGACTATCTACCAGCA  800

seq1  TTTATTTTTCAGGTTGATGTATTTGATTCTGATTCCAGAT-AAAAAAAAT  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTATTTTTCAGGTTGATGTATTTGATTCTGATTCCAGATAAAAAAAAAT  850

seq1  TGTCTCAAAAGAGAGAGCAAGTCTGAAGCCTCCTAATCAAGGGCTGTCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAAAGAGAGAGCAAGTCTGAAGCCTCCTAATCAAGGGCTGTCTA  900

seq1  GCCTGCTCAACAGGCAGAGATCCAGGTAGCCTATCAACCATCACTGTCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTCAACAGGCAGAGATCCAGGTAGCCTATCAACCATCACTGTCAT  950

seq1  GGCCACTCTTCCAAACTCTGCTCACCAAGTGGCATCTGCTATAATCTTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTCTTCCAAACTCTGCTCACCAAGTGGCATCTGCTATAATCTTGA  1000

seq1  CATTCCCAGAACTTCTCTCCTTTCCAAAGGAAAGTGCCAGATCATGGACT  1049
      |||||||||||||||||||  || ||||||||||||||||||||||||||
seq2  CATTCCCAGAACTTCTCTC--TTTCAAAGGAAAGTGCCAGATCATGGACT  1048

seq1  CCAGCAGGGACTATCTAGCCTGCA-CACCTGACTCAGAG-ACATGGGTAA  1097
       ||||| ||||||||||| ||||| |||||||||||||| |||||||| |
seq2  TCAGCA-GGACTATCTAG-CTGCACCACCTGACTCAGAGAACATGGGTTA  1096

seq1  ACTACCTGTTTTGTCTTTCACATA  1121
      ||||| || |||||| ||||||||
seq2  ACTACTTG-TTTGTC-TTCACATA  1118


seq1: chr16_79028004_79028392
seq2: B6Ng01-276O06.g_773_1154

seq1  AATGCATTTATTTGATATATTTTTACAAATGATACATCTGAGATATTTTC  50
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  AATGCATTTATTTGATATATTTTTCCAAATGATACATCTGAAATATTTTC  50

seq1  ATACAAATATACTAAGATAATAATTAAATATTATTATTGCCAAACTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAATATACTAAGATAATAATTAAATATTATTATTGCCAAACTTAAT  100

seq1  ACTACAACCACATATCGTTCAAAAGTATAGTTATTAATG-TTTTACAATG  149
      |||||||||||||||  |||||||||||| ||||| ||| ||||||||||
seq2  ACTACAACCACATATTTTTCAAAAGTATATTTATTGATGTTTTTACAATG  150

seq1  AATAAGAATCTTAAAAGAATATAGTTCTGTAATTTTAAAAACCCATTGTA  199
      | |||||||||||||||||||||||||  |||| ||||||| ||||||||
seq2  ATTAAGAATCTTAAAAGAATATAGTTCGCTAATATTAAAAATCCATTGTA  200

seq1  AAACTGAATATTTTTCATAAACTTTATATATTTCTGGGAAATGTCTTCAC  249
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  AAACTGAAT-TTTTTCATAAACTTTATATATTTCTGGAAAATGTCTTCAC  249

seq1  AGGATGACTCTTCATTAAATCTTTTTTTGTGGACTTAAAAGTACCCAAGG  299
      |||||||||||||||  |||| |||||||||||||| |||||||||||||
seq2  AGGATGACTCTTCAT--AATC-TTTTTTGTGGACTT-AAAGTACCCAAGG  295

seq1  AGCTAAAGGGGTCTGCATCCCTATAGGAGGAACAACAACATGAAGTAACC  349
      ||||||||| |||||||| |||||| |||  ||||| | ||||| || ||
seq2  AGCTAAAGGAGTCTGCAT-CCTATA-GAG--ACAAC-ATATGAACTACCC  340

seq1  AGTACTCCCCAGAGCTTGTGT-CTCTAGCTGCAT-ATGTAGC  389
      ||||   |||||||||||||| |||||||||||| |||||||
seq2  AGTAACTCCCAGAGCTTGTGTCCTCTAGCTGCATAATGTAGC  382


| Home | SequenceCutter | Blast | Download |