BAC Information

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BAC

Clone NameB6Ng01-277E03
Chromosome16 (Build37)
Map Location 89,681,053 - 89,898,269
singlet/doubletdoublet
Overlap geneTiam1
Upstream geneEG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
Downstream geneLOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277E03.bB6Ng01-277E03.g
ACCGA077824GA077825
length1,015635
definitionB6Ng01-277E03.b B6Ng01-277E03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,681,053 - 89,682,075)(89,897,635 - 89,898,269)
sequence
gaattcagtcctgggaatttcaaacaacctgggctttttttttttttttt
tttaacagagctagaccacagcctctgcctccccagtcacaatttaattc
tgacttacacagtatatcaaaataggtgggaattgtttttctaactggtt
gaaacacaaaatatgtatcttgggaatcgacctcctgtggaaaaagctat
gttggagacaaggaaggaaaagaagcgacctagaaggagagctctaactg
aagcagtcggtaggatgctcaaagctgagaagcccaaagctgttgcaggg
gttccaacctaaaggattcctttattctcagagtcaaaatgccttcactt
tctgcagctaatgaccccctgtcatgaagtcatgggattggtaagagggc
tttgccatgctccttcctcaactgactcaagtcggcgcccagagccttca
cttttagccagccctctttgtgattctgagaactatggcttctctttcac
tgtggaccccagacctgtagaatccgaatctcctctggtcttgtgttgtt
aacaatgcaaattatcccgttccaccacagacccacggattgaaagactc
ttgaagttgcaagacctaggagaccatggtgtgtgcttcagagttcaaga
aacagaaccatcctacattttttgtgaatcagctttgaaaacacagcaat
catcaaaatgtacaccagaatcagagaggtcatcgcgtgaccctgggaca
gcatggggacctttaaagagagtcatccctacttagcatgaggcagtgaa
agtatgagaaagaatttgaggggaaatgggagggaattacaagaggcaca
aatacacatcggtcctgtcccggtactcagctcttgaagaaagatctttt
ctagcatgggtatagtgtagggtgtgtagcacatgtgtgtgcaggtgcac
tgtgtacagcatgtggagatggtgtgaaccggatctctaaaagaagctat
ctttgagggtgacaa
gaattctcactctcagatctgagccaagaacatttaacaagcaacgaaga
aatcttgggttccgcggaagagaaggattgcgaggaggctcgggggatgg
aaacagaggcgagtccccggcagctcagcacctgtcagcgagccaactcc
ctgggtgacttgtatgctcagaaaaactctggggtgaaggctaatggagg
accgaggaacagattctcaagctactgccggaatttggtgtcggatattc
ccgatcttgcaaagcataagatgccaccggctgctgccgaagagactcct
ccgtacagtaattacaacacgcttccctgtaggaagtcgcactgtctttc
cgagggtgccaccaacccacaaattagccttagcaagagcatgcaaggca
gaagagcaaaaaccacccaggtaaagcctcagagatgtttcagtattttg
gaagtggtgcgcgcctcttaaagtgcatgattttgctcttatcggtttct
ctctctctctcttttttttttttttttttgaaatcgggctgtacccgggt
ttgtctggcagctgctgcagctggcatcgcttctgctgcgcccctcttac
agttctgtgggtagggggtggagattaaggggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89681053_89682075
seq2: B6Ng01-277E03.b_45_1059

seq1  GAATTCAGTCCTGGGAATTTCAAACAACCTGGGCTTTTTTTTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCTGGGAATTTCAAACAACCTGGGCTTTTTTTTTTTTTTTT  50

seq1  TTTAACAGAGCTAGACCACAGCCTCTGCCTCCCCAGTCACAATTTAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAGAGCTAGACCACAGCCTCTGCCTCCCCAGTCACAATTTAATTC  100

seq1  TGACTTACACAGTATATCAAAATAGGTGGGAATTGTTTTTCTAACTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTACACAGTATATCAAAATAGGTGGGAATTGTTTTTCTAACTGGTT  150

seq1  GAAACACAAAATATGTATCTTGGGAATCGACCTCCTGTGGAAAAAGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACAAAATATGTATCTTGGGAATCGACCTCCTGTGGAAAAAGCTAT  200

seq1  GTTGGAGACAAGGAAGGAAAAGAAGCGACCTAGAAGGAGAGCTCTAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGACAAGGAAGGAAAAGAAGCGACCTAGAAGGAGAGCTCTAACTG  250

seq1  AAGCAGTCGGTAGGATGCTCAAAGCTGAGAAGCCCAAAGCTGTTGCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTCGGTAGGATGCTCAAAGCTGAGAAGCCCAAAGCTGTTGCAGGG  300

seq1  GTTCCAACCTAAAGGATTCCTTTATTCTCAGAGTCAAAATGCCTTCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAACCTAAAGGATTCCTTTATTCTCAGAGTCAAAATGCCTTCACTT  350

seq1  TCTGCAGCTAATGACCCCCTGTCATGAAGTCATGGGATTGGTAAGAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCTAATGACCCCCTGTCATGAAGTCATGGGATTGGTAAGAGGGC  400

seq1  TTTGCCATGCTCCTTCCTCAACTGACTCAAGTCGGCGCCCAGAGCCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATGCTCCTTCCTCAACTGACTCAAGTCGGCGCCCAGAGCCTTCA  450

seq1  CTTTTAGCCAGCCCTCTTTGTGATTCTGAGAACTATGGCTTCTCTTTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGCCAGCCCTCTTTGTGATTCTGAGAACTATGGCTTCTCTTTCAC  500

seq1  TGTGGACCCCAGACCTGTAGAATCCGAATCTCCTCTGGTCTTGTGTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACCCCAGACCTGTAGAATCCGAATCTCCTCTGGTCTTGTGTTGTT  550

seq1  AACAATGCAAATTATCCCGTTCCACCACAGACCCACGGATTGAAAGACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGCAAATTATCCCGTTCCACCACAGACCCACGGATTGAAAGACTC  600

seq1  TTGAAGTTGCAAGACCTAGGAGACCATGGTGTGTGCTTCAGAGTTCAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTGCAAGACCTAGGAGACCATGGTGTGTGCTTCAGAGTTCAAGA  650

seq1  AACAGAACCATCCTACATTTTTTGTGAATCAGCTTTGAAAACACAGCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACCATCCTACATTTTTTGTGAATCAGCTTTGAAAACACAGCAAT  700

seq1  CATCAAAATGTACACCAGAATCAGAGAGGTCATCGCGTGACCCTGGGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAATGTACACCAGAATCAGAGAGGTCATCGCGTGACCCTGGGACA  750

seq1  GCATGGGGACCTTTAAAGAGAGTCATCCCTACTTAGCATGAGGCAGTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGGACCTTTAAAGAGAGTCATCCCTACTTAGCATGAGGCAGTGAA  800

seq1  AGTATGAGAAAGAATTTGAGGGGAAATGGGAGGGAATTACAAGAGGCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAGAAAGAATTTGAGGGGAAATGGGAGGGAATTACAAGAGGCACA  850

seq1  AATACACATCGGTCCTGTCCCGGTACTCAGCTCTTGAAGAAAGATCCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATACACATCGGTCCTGTCCCGGTACTCAGCTCTTGAAGAAAGAT-CTTT  899

seq1  TCTTAGCATGGGTATAGGTGTAGGGTGTGTAGGCACATGTGTGTGCAGGT  950
      || ||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  TC-TAGCATGGGTATA-GTGTAGGGTGTGTA-GCACATGTGTGTGCAGGT  946

seq1  GCACTGTGTACAAGCATGTGGAGATGGTGTGAACCGGAATCCCTAAAAAG  1000
      ||||||||||| ||||||||||||||||||||||||| ||| || |||||
seq2  GCACTGTGTAC-AGCATGTGGAGATGGTGTGAACCGG-ATCTCT-AAAAG  993

seq1  AAGCTATCTTTTGAGGGTGACAA  1023
      |||||||| ||||||||||||||
seq2  AAGCTATC-TTTGAGGGTGACAA  1015

seq1: chr16_89897635_89898269
seq2: B6Ng01-277E03.g_65_699 (reverse)

seq1  ACACCCCTTAATCTCCACCCCCTACCCACAGAACTGTAAGAGGGGCGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCTTAATCTCCACCCCCTACCCACAGAACTGTAAGAGGGGCGCAG  50

seq1  CAGAAGCGATGCCAGCTGCAGCAGCTGCCAGACAAACCCGGGTACAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCGATGCCAGCTGCAGCAGCTGCCAGACAAACCCGGGTACAGCCC  100

seq1  GATTTCAAAAAAAAAAAAAAAAAAGAGAGAGAGAGAGAAACCGATAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAAAAAAAAAAAAAAAAAAGAGAGAGAGAGAGAAACCGATAAGAG  150

seq1  CAAAATCATGCACTTTAAGAGGCGCGCACCACTTCCAAAATACTGAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCATGCACTTTAAGAGGCGCGCACCACTTCCAAAATACTGAAACA  200

seq1  TCTCTGAGGCTTTACCTGGGTGGTTTTTGCTCTTCTGCCTTGCATGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGGCTTTACCTGGGTGGTTTTTGCTCTTCTGCCTTGCATGCTCT  250

seq1  TGCTAAGGCTAATTTGTGGGTTGGTGGCACCCTCGGAAAGACAGTGCGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGGCTAATTTGTGGGTTGGTGGCACCCTCGGAAAGACAGTGCGAC  300

seq1  TTCCTACAGGGAAGCGTGTTGTAATTACTGTACGGAGGAGTCTCTTCGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACAGGGAAGCGTGTTGTAATTACTGTACGGAGGAGTCTCTTCGGC  350

seq1  AGCAGCCGGTGGCATCTTATGCTTTGCAAGATCGGGAATATCCGACACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCGGTGGCATCTTATGCTTTGCAAGATCGGGAATATCCGACACCA  400

seq1  AATTCCGGCAGTAGCTTGAGAATCTGTTCCTCGGTCCTCCATTAGCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCGGCAGTAGCTTGAGAATCTGTTCCTCGGTCCTCCATTAGCCTTC  450

seq1  ACCCCAGAGTTTTTCTGAGCATACAAGTCACCCAGGGAGTTGGCTCGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGAGTTTTTCTGAGCATACAAGTCACCCAGGGAGTTGGCTCGCTG  500

seq1  ACAGGTGCTGAGCTGCCGGGGACTCGCCTCTGTTTCCATCCCCCGAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGCTGAGCTGCCGGGGACTCGCCTCTGTTTCCATCCCCCGAGCCT  550

seq1  CCTCGCAATCCTTCTCTTCCGCGGAACCCAAGATTTCTTCGTTGCTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCAATCCTTCTCTTCCGCGGAACCCAAGATTTCTTCGTTGCTTGTT  600

seq1  AAATGTTCTTGGCTCAGATCTGAGAGTGAGAATTC  635
      |||||||||||||||||||||||||||||||||||
seq2  AAATGTTCTTGGCTCAGATCTGAGAGTGAGAATTC  635