BAC Information

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BAC

Clone NameB6Ng01-277H23
Chromosome16 (Build37)
Map Location 72,547,896 - 72,718,349
singlet/doubletdoublet
Overlap geneRobo1
Upstream genenone
Downstream geneLOC100039310, LOC100039318, LOC100039326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277H23.bB6Ng01-277H23.g
ACCGA078002GA078003
length1,090484
definitionB6Ng01-277H23.b B6Ng01-277H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,717,236 - 72,718,349)(72,547,896 - 72,548,385)
sequence
gaattctttgttattagctctttttttaaaaaaaatatgcatttatttta
tgtatatgagtacaccatagctgtcttcagccatacccgaagagggcatc
agatcccatggttgtgagccaccatgtggttgctgggaattgaactcagg
acctctggaacaatcagagctcttaacctctgagccatctgtccagcccc
accagtgaactcttaaagagggacaataacaaaatacaagcaaaaaaaag
aaatcgttggccagccataacagatcatttaaaatggaggtgcattgccc
cacagtagtagagtctacaaatcaagaatagggaggggccagggtggttc
ttcggaaagacagagagcgagaatgtaaacagtgtttgctggctacatca
ctcctgcgctcagaactctgtatctgacttgccattcctgtatctgcctc
tctcgccaaatctcttgctttctgcatgaatacagacatgctgactaatt
agtgctcaagccagtaactcccacctcatggggatcctccccaaacaacc
tatcacatccaaatgacacctcatctccctgtgctgaggggaggaattct
acaacgatcccaggaagcaatcccatccctaaccttagaatacacagaca
ggagttgaaaggatggttaagagggggaatacaaatgaggagcaaaaata
atatggacagactttttccagcatggttattcgaagagctagccaccgtc
aggaagagagagttgaagtgcaaatttcagtcaaactttagcaatctagg
catgttcacaaaggcttttgcattcgagcccactactgcacagatgctct
tgggagatgtggaggagtgaagaagctgctgttaagtgttttctaggaac
aagtcacagcaggcaagaggaaggtagtgggaagagggcaagctccaatg
agttaaccatcccatgatgccgtggagcaaatttgtggggggtgatattg
aatagaaagttacatagtagaacattcataaggtacgtaccagtcttggc
tagggtcgaaacacaggagaagtcagcttaggcctatttt

ctaaaactgagaatttgagatgataggcaatttttacccatgttctaaga
ctacctacctattgcttttttttttttacatatgctcttatagtgataat
cacactactgtccttgtcaaaataaattcatcaagatattttaataattg
atttttcagtactaaaatctagtaatacatgttcatgaagaaaaaccaaa
ccaaagtgaatttctataaagctgaaacaactctaactttgaggtacttg
aaaatgtagagtatctacacaaacaaaataaatttttccagagaagaatg
actctattacatgtatttttcttcagtcttctctataattaagcaccagt
caagattgaaacacattatggctatggtataactctaccatggatttttt
ttaatctaagaagacagattatagttaaaaataagaacagaacaaatctc
tgtctcgtggtgatgatggtggtggtggtagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72717236_72718349
seq2: B6Ng01-277H23.b_44_1133 (reverse)

seq1  AAAATAGCCCTAAGCTGGATTTCTTCCTGTGTTTTCGACCCCTTGCCCAA  50
      ||||||| |||||||| || ||| ||||||| |||||||||  |  ||||
seq2  AAAATAGGCCTAAGCT-GACTTC-TCCTGTG-TTTCGACCC--TAGCCAA  45

seq1  GAACCTGTGTACGTAACTTTATGAAATTGTTCTTACTTATGGTAACTTTC  100
      ||  ||| |||||| || |||||||  ||||| ||| ||| |||||||||
seq2  GA--CTG-GTACGT-ACCTTATGAA--TGTTC-TAC-TAT-GTAACTTTC  86

seq1  TTATTCATTTATCAACCCCCCACCAAATTTGCCTCCCCACGGCATCATGG  150
       ||||||  |||| |||||||| ||||||||   | ||||||||||||||
seq2  -TATTCA-ATATC-ACCCCCCA-CAAATTTG---CTCCACGGCATCATGG  129

seq1  GATGGTTAACTCATTGGAGCTTGCCCCTCTTCCCACTACCCTTCCTCTTG  200
      ||||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  GATGGTTAACTCATTGGAGCTTG-CCCTCTTCCCACTA-CCTTCCTCTTG  177

seq1  CCCTGCTGTGACTTGTTCCTAGAAAACACTTAACAGCAGCTTCTTCACTC  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CCTGCTGTGACTTGTTCCTAGAAAACACTTAACAGCAGCTTCTTCACTC  226

seq1  CTCCACATCTCCCAAGAGCATCTGTGCAGTAGTGGGCTCGAATGCAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATCTCCCAAGAGCATCTGTGCAGTAGTGGGCTCGAATGCAAAAG  276

seq1  CCTTTGTGAACATGCCTAGATTGCTAAAGTTTGACTGAAATTTGCACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGAACATGCCTAGATTGCTAAAGTTTGACTGAAATTTGCACTTC  326

seq1  AACTCTCTCTTCCTGACGGTGGCTAGCTCTTCGAATAACCATGCTGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCTCTTCCTGACGGTGGCTAGCTCTTCGAATAACCATGCTGGAAA  376

seq1  AAGTCTGTCCATATTATTTTTGCTCCTCATTTGTATTCCCCCTCTTAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGTCCATATTATTTTTGCTCCTCATTTGTATTCCCCCTCTTAACC  426

seq1  ATCCTTTCAACTCCTGTCTGTGTATTCTAAGGTTAGGGATGGGATTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCAACTCCTGTCTGTGTATTCTAAGGTTAGGGATGGGATTGCTT  476

seq1  CCTGGGATCGTTGTAGAATTCCTCCCCTCAGCACAGGGAGATGAGGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGATCGTTGTAGAATTCCTCCCCTCAGCACAGGGAGATGAGGTGTC  526

seq1  ATTTGGATGTGATAGGTTGTTTGGGGAGGATCCCCATGAGGTGGGAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGATGTGATAGGTTGTTTGGGGAGGATCCCCATGAGGTGGGAGTTA  576

seq1  CTGGCTTGAGCACTAATTAGTCAGCATGTCTGTATTCATGCAGAAAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGAGCACTAATTAGTCAGCATGTCTGTATTCATGCAGAAAGCAA  626

seq1  GAGATTTGGCGAGAGAGGCAGATACAGGAATGGCAAGTCAGATACAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTGGCGAGAGAGGCAGATACAGGAATGGCAAGTCAGATACAGAGT  676

seq1  TCTGAGCGCAGGAGTGATGTAGCCAGCAAACACTGTTTACATTCTCGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCGCAGGAGTGATGTAGCCAGCAAACACTGTTTACATTCTCGCTC  726

seq1  TCTGTCTTTCCGAAGAACCACCCTGGCCCCTCCCTATTCTTGATTTGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTCCGAAGAACCACCCTGGCCCCTCCCTATTCTTGATTTGTAG  776

seq1  ACTCTACTACTGTGGGGCAATGCACCTCCATTTTAAATGATCTGTTATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACTACTGTGGGGCAATGCACCTCCATTTTAAATGATCTGTTATGG  826

seq1  CTGGCCAACGATTTCTTTTTTTTGCTTGTATTTTGTTATTGTCCCTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAACGATTTCTTTTTTTTGCTTGTATTTTGTTATTGTCCCTCTTT  876

seq1  AAGAGTTCACTGGTGGGGCTGGACAGATGGCTCAGAGGTTAAGAGCTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTCACTGGTGGGGCTGGACAGATGGCTCAGAGGTTAAGAGCTCTG  926

seq1  ATTGTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCA  976

seq1  CAACCATGGGATCTGATGCCCTCTTCGGGTATGGCTGAAGACAGCTATGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATGGGATCTGATGCCCTCTTCGGGTATGGCTGAAGACAGCTATGG  1026

seq1  TGTACTCATATACATAAAATAAATGCATATTTTTTTTAAAAAAAGAGCTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCATATACATAAAATAAATGCATATTTTTTTTAAAAAAAGAGCTA  1076

seq1  ATAACAAAGAATTC  1114
      ||||||||||||||
seq2  ATAACAAAGAATTC  1090


seq1: chr16_72547896_72548385
seq2: B6Ng01-277H23.g_67_556

seq1  GAATTCCTAAAACTGAGAATTTGAGATGATAGGCAATTTTTACCCATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAAACTGAGAATTTGAGATGATAGGCAATTTTTACCCATGTT  50

seq1  CTAAGACTACCTACCTATTGCTTTTTTTTTTTTACATATGCTCTTATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACTACCTACCTATTGCTTTTTTTTTTTTACATATGCTCTTATAGT  100

seq1  GATAATCACACTACTGTCCTTGTCAAAATAAATTCATCAAGATATTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATCACACTACTGTCCTTGTCAAAATAAATTCATCAAGATATTTTAA  150

seq1  TAATTGATTTTTCAGTACTAAAATCTAGTAATACATGTTCATGAAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATTTTTCAGTACTAAAATCTAGTAATACATGTTCATGAAGAAAA  200

seq1  ACCAAACCAAAGTGAATTTCTATAAAGCTGAAACAACTCTAACTTTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACCAAAGTGAATTTCTATAAAGCTGAAACAACTCTAACTTTGAGG  250

seq1  TACTTGAAAATGTAGAGTATCTACACAAACAAAATAAATTTTTCCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAAAATGTAGAGTATCTACACAAACAAAATAAATTTTTCCAGAGA  300

seq1  AGAATGACTCTATTACATGTATTTTTCTTCAGTCTTCTCTATAATTAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGACTCTATTACATGTATTTTTCTTCAGTCTTCTCTATAATTAAGC  350

seq1  ACCAGTCAAGATTGAAACACATTATGGCTATGGTATAACTCTACCATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCAAGATTGAAACACATTATGGCTATGGTATAACTCTACCATGGA  400

seq1  TTTTTTTTAATCTAAGAAGACAGATTATAGTTAAAAATAAGAACAGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAATCTAAGAAGACAGATTATAGTTAAAAATAAGAACAGAACA  450

seq1  AATCTCTGTCTCGTGGTGATGATGGTGGTGGTGGTAGTGG  490
      ||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTGTCTCGTGGTGATGATGGTGGTGGTGGTAGTGG  490


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