BAC Information

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BAC

Clone NameB6Ng01-277M20
Chromosome16 (Build37)
Map Location 65,326,758 - 65,461,048
singlet/doubletdoublet
Overlap genenone
Upstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
Downstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277M20.bB6Ng01-277M20.g
ACCGA078219GA078220
length9571,113
definitionB6Ng01-277M20.b B6Ng01-277M20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,460,093 - 65,461,048)(65,326,758 - 65,327,881)
sequence
gaattcatccaaaggttgcccactcatatttgtgcctcccaggtcttcct
agaaaaccacagccctgtcaactcaaactttcctggccaatcaccaccgt
gatttcctcagatgattttgaggtttgagataattaaaatttttcagtaa
aatattttattgttaaaaattgcatcactgaacattttaaattcaaaatg
tgaaacggtaaatttagtcttttaaaattgacccttaagcgacttttttt
ttcctgcctctttctaggactttagtaaacactgtgatttaattcattta
atttccactacctaaaagtttactaaaagttaaatttcaaaataaaagaa
acacacaccctaagatgtagagattaggagaaagtagctaatttacgtac
ggcacgaatcttttctaaaactatatgataactaatctattagatgttac
cagttgcagatagatgtaaagcagttttccttgaaatcaagatccatctt
gatgtaaaacatcactctcaacatgctatttcatcatacaacgtataatg
agcccgtttttcttccacacacaagctgcttgcagcttacaactcaagga
ccaggtcaagaaggcagggaaagtgagaatttctttccctgctaacaaca
tggccttcaccccaatgacgtgtgtgttaaacttctgacacagagacatg
catttgctctcactctcaagaggagcaaaattttaatgaaaagaaaattc
ttaaatgttaagaccatgtcttaacatttaagtaaaaagtcaaatacatt
tttaaaaaatcattttttttttctgaaacataggctttctggtgaggttt
cattcattatgctctcctgatttttactcattattactatatataacttc
tattattatataacatttaatatgaataatatatatatatgtgtgtgtgt
gtgtgtg

gaattcagcgtgagcttgaagaatatcagtggaagaacaggcctatctgt
gactttacctgagaccttaaattcaagggactaaactcccaaagcattat
ttatccttcaaatatgaagaaagtcattccacatggcatttaaattctcc
gtggagaatttcatcaggtttctgaataatgtgattacaatttatatttt
aaaagaaggttcaatcataatcacaaagtctacaatgtatgattccacag
atggtataagaagaaattagcaagaacaattccatgataggtgctttaag
agagacttattttaatatcaaataattcaagaaggagaaaacagatgaag
gaatggaaaatgttcgcaaaacagttcctctgcaaatgttcatgctgcaa
aagtcaactgtaaaccggaagctgttaaatcaccacgccccaccattctc
cagaaccgaagatgcttgatttatcctttgttctaatcatcagcatagtt
gaaattataacttattttagcaaaacgctataagcttatttggataaaat
aaaagggtgtgaaactatgtatacaaaaaaattgtaagagagctcttcat
taaaaatgaggtagaaacataaaaagaaaaaccctaggagagtaattggg
taccactaggtaccactaggtaccactaggtgggtaaatcagtagcactg
actgggaggcaatacaacactgagtctgtagctgagatggctacatagga
tggagctaggtgggagcaagcatgataaaggtttgttttcactagtctga
aagtgccactcagccacccataataataagaacaattgtagtagagagaa
tatcatattgtagtgtccagtgcagagagtatactaggaaaatatagcag
accagagcattcacactttccatctctgaaaacaattggtaagataaccc
aatataaatctagatcgttacagcatcacatccagataccaggtcaaata
gtaaaacaggagcgcagactccagaaagaatacatctacatttaatattt
tttttcttctgatgtagttagagaacaacacccagaactctgctcggtta
gattctgtttgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_65460093_65461048
seq2: B6Ng01-277M20.b_47_1003 (reverse)

seq1  CACACACACACACACACATATATATATATTATTCATATTAAATGTTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACATATATATATATTATTCATATTAAATGTTATAT  50

seq1  AATAATAGAAGTTATATATAGTAATAATGAGTAAAAATCAGGAGAGCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAGAAGTTATATATAGTAATAATGAGTAAAAATCAGGAGAGCATA  100

seq1  ATGAATGAAACCTCACCAGAAAGCCTATGTTTCAG-AAAAAAAAATGATT  149
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATGAATGAAACCTCACCAGAAAGCCTATGTTTCAGAAAAAAAAAATGATT  150

seq1  TTTTAAAAATGTATTTGACTTTTTACTTAAATGTTAAGACATGGTCTTAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAATGTATTTGACTTTTTACTTAAATGTTAAGACATGGTCTTAA  200

seq1  CATTTAAGAATTTTCTTTTCATTAAAATTTTGCTCCTCTTGAGAGTGAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAGAATTTTCTTTTCATTAAAATTTTGCTCCTCTTGAGAGTGAGA  250

seq1  GCAAATGCATGTCTCTGTGTCAGAAGTTTAACACACACGTCATTGGGGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGCATGTCTCTGTGTCAGAAGTTTAACACACACGTCATTGGGGTG  300

seq1  AAGGCCATGTTGTTAGCAGGGAAAGAAATTCTCACTTTCCCTGCCTTCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCATGTTGTTAGCAGGGAAAGAAATTCTCACTTTCCCTGCCTTCTT  350

seq1  GACCTGGTCCTTGAGTTGTAAGCTGCAAGCAGCTTGTGTGTGGAAGAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGTCCTTGAGTTGTAAGCTGCAAGCAGCTTGTGTGTGGAAGAAAA  400

seq1  ACGGGCTCATTATACGTTGTATGATGAAATAGCATGTTGAGAGTGATGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCTCATTATACGTTGTATGATGAAATAGCATGTTGAGAGTGATGTT  450

seq1  TTACATCAAGATGGATCTTGATTTCAAGGAAAACTGCTTTACATCTATCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCAAGATGGATCTTGATTTCAAGGAAAACTGCTTTACATCTATCT  500

seq1  GCAACTGGTAACATCTAATAGATTAGTTATCATATAGTTTTAGAAAAGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGGTAACATCTAATAGATTAGTTATCATATAGTTTTAGAAAAGAT  550

seq1  TCGTGCCGTACGTAAATTAGCTACTTTCTCCTAATCTCTACATCTTAGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGCCGTACGTAAATTAGCTACTTTCTCCTAATCTCTACATCTTAGGG  600

seq1  TGTGTGTTTCTTTTATTTTGAAATTTAACTTTTAGTAAACTTTTAGGTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTTCTTTTATTTTGAAATTTAACTTTTAGTAAACTTTTAGGTAG  650

seq1  TGGAAATTAAATGAATTAAATCACAGTGTTTACTAAAGTCCTAGAAAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTAAATGAATTAAATCACAGTGTTTACTAAAGTCCTAGAAAGAG  700

seq1  GCAGGAAAAAAAAAGTCGCTTAAGGGTCAATTTTAAAAGACTAAATTTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAAAAAAAAGTCGCTTAAGGGTCAATTTTAAAAGACTAAATTTAC  750

seq1  CGTTTCACATTTTGAATTTAAAATGTTCAGTGATGCAATTTTTAACAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCACATTTTGAATTTAAAATGTTCAGTGATGCAATTTTTAACAATA  800

seq1  AAATATTTTACTGAAAAATTTTAATTATCTCAAACCTCAAAATCATCTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTACTGAAAAATTTTAATTATCTCAAACCTCAAAATCATCTGA  850

seq1  GGAAATCACGGTGGTGATTGGCCAGGAAAGTTTGAGTTGACAGGGCTGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCACGGTGGTGATTGGCCAGGAAAGTTTGAGTTGACAGGGCTGTG  900

seq1  GTTTTCTAGGAAGACCTGGGAGGCACAAATATGAGTGGGCAACCTTTGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTAGGAAGACCTGGGAGGCACAAATATGAGTGGGCAACCTTTGGA  950

seq1  TGAATTC  956
      |||||||
seq2  TGAATTC  957


seq1: chr16_65326758_65327881
seq2: B6Ng01-277M20.g_66_1178

seq1  GAATTCAGCGTGAGCTTGAAGAATATCAGTGGAAGAACAGGCCTATCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCGTGAGCTTGAAGAATATCAGTGGAAGAACAGGCCTATCTGT  50

seq1  GACTTTACCTGAGACCTTAAATTCAAGGGACTAAACTCCCAAAGCATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTACCTGAGACCTTAAATTCAAGGGACTAAACTCCCAAAGCATTAT  100

seq1  TTATCCTTCAAATATGAAGAAAGTCATTCCACATGGCATTTAAATTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTTCAAATATGAAGAAAGTCATTCCACATGGCATTTAAATTCTCC  150

seq1  GTGGAGAATTTCATCAGGTTTCTGAATAATGTGATTACAATTTATATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAATTTCATCAGGTTTCTGAATAATGTGATTACAATTTATATTTT  200

seq1  AAAAGAAGGTTCAATCATAATCACAAAGTCTACAATGTATGATTCCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGGTTCAATCATAATCACAAAGTCTACAATGTATGATTCCACAG  250

seq1  ATGGTATAAGAAGAAATTAGCAAGAACAATTCCATGATAGGTGCTTTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATAAGAAGAAATTAGCAAGAACAATTCCATGATAGGTGCTTTAAG  300

seq1  AGAGACTTATTTTAATATCAAATAATTCAAGAAGGAGAAAACAGATGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTTATTTTAATATCAAATAATTCAAGAAGGAGAAAACAGATGAAG  350

seq1  GAATGGAAAATGTTCGCAAAACAGTTCCTCTGCAAATGTTCATGCTGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAAAATGTTCGCAAAACAGTTCCTCTGCAAATGTTCATGCTGCAA  400

seq1  AAGTCAACTGTAAACCGGAAGCTGTTAAATCACCACGCCCCACCATTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAACTGTAAACCGGAAGCTGTTAAATCACCACGCCCCACCATTCTC  450

seq1  CAGAACCGAAGATGCTTGATTTATCCTTTGTTCTAATCATCAGCATAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCGAAGATGCTTGATTTATCCTTTGTTCTAATCATCAGCATAGTT  500

seq1  GAAATTATAACTTATTTTAGCAAAACGCTATAAGCTTATTTGGATAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATAACTTATTTTAGCAAAACGCTATAAGCTTATTTGGATAAAAT  550

seq1  AAAAGGGTGTGAAACTATGTATACAAAAAAATTGTAAGAGAGCTCTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGTGTGAAACTATGTATACAAAAAAATTGTAAGAGAGCTCTTCAT  600

seq1  TAAAAATGAGGTAGAAACATAAAAAGAAAAACCCTAGGAGAGTAATTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGAGGTAGAAACATAAAAAGAAAAACCCTAGGAGAGTAATTGGG  650

seq1  TACCACTAGGTACCACTAGGTACCACTAGGTGGGTAAATCAGTAGCACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTAGGTACCACTAGGTACCACTAGGTGGGTAAATCAGTAGCACTG  700

seq1  ACTGGGAGGCAATACAACACTGAGTCTGTAGCTGAGATGGCTACATAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAGGCAATACAACACTGAGTCTGTAGCTGAGATGGCTACATAGGA  750

seq1  TGGAGCTAGGTGGGAGCAAGCATGAT-AAGGTTTGTTTTCACTAGTCTGA  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGGAGCTAGGTGGGAGCAAGCATGATAAAGGTTTGTTTTCACTAGTCTGA  800

seq1  AAGTGCCACTCAGCCACCCATAATAATAAGAACAATTGTAGTAGAGAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCACTCAGCCACCCATAATAATAAGAACAATTGTAGTAGAGAGAA  850

seq1  TATCATATTGTAGTGTCCAGTGCAGAGAGTATACTAGGAAAATATAGCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATTGTAGTGTCCAGTGCAGAGAGTATACTAGGAAAATATAGCAG  900

seq1  ACCAGAGCATTCACAC-TTCCATCTCTTGAAAACAATTGGTAAAGATAAA  948
      |||||||||||||||| ||||||||| |||||||||||||| ||||| ||
seq2  ACCAGAGCATTCACACTTTCCATCTC-TGAAAACAATTGGT-AAGAT-AA  947

seq1  CCCAATATAAATCTAGATCGTTAACAGCATCACATCCAGATACCAGTTCA  998
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  CCCAATATAAATCTAGATCGTT-ACAGCATCACATCCAGATACCAGGTCA  996

seq1  AAATTAGGTAAAACAAGAGCGCAGACTCCAGAAAGAATACATCCTTACAT  1048
      ||  || |||||||| |||||||||||||||||||||||||||  |||||
seq2  AA--TA-GTAAAACAGGAGCGCAGACTCCAGAAAGAATACATC--TACAT  1041

seq1  TTATTATTTTTTTTCTTCTGATGTAGTTAGAGAACCAAACACCCAGAAAC  1098
      ||| |||||||||||||||||||||||||||||||  ||||||||| |||
seq2  TTAATATTTTTTTTCTTCTGATGTAGTTAGAGAAC--AACACCCAG-AAC  1088

seq1  TCTGCTCGGGTAAGATTCTGTTTGAC  1124
      ||||||| ||| ||||||||||||||
seq2  TCTGCTC-GGTTAGATTCTGTTTGAC  1113


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