BAC Information

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BAC

Clone NameB6Ng01-278C02
Chromosome16 (Build37)
Map Location 20,485,108 - 20,592,161
singlet/doubletdoublet
Overlap geneEif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055
Upstream geneOlfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5
Downstream geneEG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915, 2310042E22Rik, Ephb3, 6430590I03Rik, Vps8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278C02.bB6Ng01-278C02.g
ACCGA078455GA078456
length1,1361,062
definitionB6Ng01-278C02.b B6Ng01-278C02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,485,108 - 20,486,252)(20,591,087 - 20,592,161)
sequence
gaattcctcagataaccttaaaggtaaaggtcccggaggcagcagaagcc
acccactctgtgctcgagatgctagagtcttaactatgggaagcctggac
cccaggccctatattatgttgtgattagaactaagaaaacaataaactct
acttccaaccctaacagctgtaaataggatccaccgaagctcaccctggg
ggacctccacgggaagagttcctgtttaatgtctcgaagaaactccctag
gtggttcccttatgcagattcctgtagtcatacacagcaggtagcaggtt
aattccgggaacggaggtcaagtgtatttccaggccccagagactacctg
gtttgctttcactacagcttaaccaagaatattagttaaggttttcattg
ctgtaaagaaataatatgaccaaggcaattctcataaaaaacagcactta
attgggttacaggttctgaggttcaatccaatatcatcatggcaggaagc
atggcattgtccaagcagggatggcactggaggagttgagagttttatat
cttgttctgaaggcaaccggaagaagactgtcttccaggaagctaagagg
agagtctcaaagcccacccctacagtgacacactttctccaacaaggcta
tatctcctaatagtgccactccttgggccaagcatattcaaaccaccaca
ccaagcatgcatcttctgaattgtttgcactggaggagaactcacccctt
tgtgtcctcatgcatgttataccacatgtgcttgtctataatggagaaga
gggcagggctcctctaaatctagattctaggcttccctgtacagcaagcc
attccattctcactccgctgctgcaggcattgaagattgtgctgcagttg
gacttgagccctaatcatgaaggataaaactttaggaaatcaacgctgtt
cacatctggaaacccagttagactcctcagccaaggttgtttttcagaat
cgagagatgggaactcctctttaggagacagaggactctgacactgggac
aacttgtgcttctcttgtcatcagtcaaggtaattagagagttaagccac
gtcataattaacatcagggacagagaaaggaggtgt
gaattccataaggagaaagcatttgagtaactctcagagaacaagcacaa
acacattaattagagccagcggatggtagagctgagcagtataaattgag
ctttagctaggagtgagaacctgggctgttagacaggacagtggatttga
ttctggagctagtccgttcataggttcaccggaactcatgtgtgtagtct
aagaggcaagggactgaggaggagatagcctgcctcaacctaaagagact
atggctacctgaacagtagaggtctttggtaccctggaaactactttgtg
cctattgtgtctgcctggctgcgaaggacatactcagcctgggccacatt
ctttcagtaccaggttcaggttagatgcccagtccatgactgctggataa
aggggtaaccaatggatggaaaataaaatcagcgtctggaagaagaaagg
aggctggcgatgttagcggaggcacgagggtgcaagaacctgagctggca
ttcgagggcgcgggctcgggctcgggctcggagcttaccctgtgcgcagc
ggcggggtgtagaggtccctagtcccgggcccagagcgcgacagcaggcg
gcctgtgatcggcgccggctatgcaactggaaggagacgcgccgtccggc
cgcctcggcctcgaagccagataccacctccgcctcagccagagggtaca
cgaacacgcctgcgagcaggaacaggcagacctgctctcgaaccccacct
ggcatttgctacctccccgcgcccgcaccaggtctcaccttccaccggct
ggggctgtgggttgtggtaggtaagccgggcacgcagctgaggcagggtc
ccttggcatagcccggacgcaggagtcggtgagcggcagcggcgtccagc
tggtggggcagtacagtcaggcatggtgcccaccctgcgtgacaggggct
ggatgaggggcacctcgcttcagcgtcatgaaaactagcttatgccactg
accctatcggtactggactgggatgaaagcttgcaaaggagcagctgagt
cgggagaccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_20485108_20486252
seq2: B6Ng01-278C02.b_42_1177

seq1  GAATTCCTCAGATAACCTTAAAGGTAAAGGTCCAGGAGGCAGCAGAAGCC  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATTCCTCAGATAACCTTAAAGGTAAAGGTCCCGGAGGCAGCAGAAGCC  50

seq1  ACCCACTCTGTGCTCTAGATGCTAGAGTCTTAACTATGGGAAGCCTGGAC  100
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACCCACTCTGTGCTCGAGATGCTAGAGTCTTAACTATGGGAAGCCTGGAC  100

seq1  CCCAGGCCCTATATTATGTTGTGATTAGAACTAAGAAAACAATAAACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCCCTATATTATGTTGTGATTAGAACTAAGAAAACAATAAACTCT  150

seq1  ACTTCCAACCCTAACAGCTGTAAATAGGATCCACCGAAGCTCACCCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAACCCTAACAGCTGTAAATAGGATCCACCGAAGCTCACCCTGGG  200

seq1  GGACCTCCACGGGAAGAGTTCCTGTTTAATGTCTCGAAGAAACTCCCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCCACGGGAAGAGTTCCTGTTTAATGTCTCGAAGAAACTCCCTAG  250

seq1  GTGGTTCCCTTATGCAGATTCCTGTAGTCATACACAGCAGGTAGCAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCCCTTATGCAGATTCCTGTAGTCATACACAGCAGGTAGCAGGTT  300

seq1  AATTCCAGGAACGGAGGTCAAGTGTATTTCCAGGCCCCAGAGACTACCTG  350
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCGGGAACGGAGGTCAAGTGTATTTCCAGGCCCCAGAGACTACCTG  350

seq1  GTTTGCTTTCACTACAGCTTAACCAAGAATATTAGTTAAGGTTTTCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTTCACTACAGCTTAACCAAGAATATTAGTTAAGGTTTTCATTG  400

seq1  CTGTAAAGAAATAATATGACCAAGGCAATTCTCATAAAAAACAGCACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAGAAATAATATGACCAAGGCAATTCTCATAAAAAACAGCACTTA  450

seq1  ATTGGGTTACAGGTTCTGAGGTTCAATCCAATATCATCATGGCAGGAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTTACAGGTTCTGAGGTTCAATCCAATATCATCATGGCAGGAAGC  500

seq1  ATGGCATTGTCCAAGCAGGGATGGCACTGGAGGAGTTGAGAGTTTTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATTGTCCAAGCAGGGATGGCACTGGAGGAGTTGAGAGTTTTATAT  550

seq1  CTTGTTCTGAAGGCAACCGGAAGAAGACTGTCTTCCAGGAAGCTAAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTGAAGGCAACCGGAAGAAGACTGTCTTCCAGGAAGCTAAGAGG  600

seq1  AGAGTCTCAAAGCCCACCCCTACAGTGACACACTTTCTCCAACAAGGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTCAAAGCCCACCCCTACAGTGACACACTTTCTCCAACAAGGCTA  650

seq1  TATCTCCTAATAGTGCCACTCCTTGGGCCAAGCATATTCAAACCACCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCTAATAGTGCCACTCCTTGGGCCAAGCATATTCAAACCACCACA  700

seq1  CCAAGCATGCATCTTCTGAATTGTTTGCACTGGAGGAGAACTCACCCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCATGCATCTTCTGAATTGTTTGCACTGGAGGAGAACTCACCCCTT  750

seq1  TGTGTCCTCATGCATGTTATACCACATGTGCTTGTCTATAATGGAGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTCATGCATGTTATACCACATGTGCTTGTCTATAATGGAGAAGA  800

seq1  GGGCAGGGCTCCTCTAAATCTAGATTCTAGGCTTCCCTGTACAGCAAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGCTCCTCTAAATCTAGATTCTAGGCTTCCCTGTACAGCAAGCC  850

seq1  ATTCCATTCTCACTCCGCTGCTGCAGGCATTGAAGATTGTGCTGCAGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTCTCACTCCGCTGCTGCAGGCATTGAAGATTGTGCTGCAGTTG  900

seq1  GACTTGAGCCCTAATCATGAAGGATAAAAACTTTAGGAAATCAACGCTGT  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GACTTGAGCCCTAATCATGAAGGAT-AAAACTTTAGGAAATCAACGCTGT  949

seq1  TCACATCTGGAAACCCAGTTAGACTCCTCAGCCAAGGTTGTTTTCCAGAA  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCACATCTGGAAACCCAGTTAGACTCCTCAGCCAAGGTTGTTTTTCAGAA  999

seq1  TCGAAGAGGATGGGAACTCCTCTTTAGGAGACAAGAAGGACTCTGACACT  1050
      ||| ||| |||||||||||||||||||||||||   ||||||||||||||
seq2  TCG-AGA-GATGGGAACTCCTCTTTAGGAGACA--GAGGACTCTGACACT  1045

seq1  GGGACAAACTTGTTGCTTCTC-TGTCAATCAGTCAGGGTAATTAGAGAAG  1099
      ||||| |||||| |||||||| |||| |||||||| ||||||||||||  
seq2  GGGAC-AACTTG-TGCTTCTCTTGTC-ATCAGTCAAGGTAATTAGAGA--  1090

seq1  GTTTAGCCACGGTCATAA-TAACATTCAGGACAGAGAAAAGAGGTGT  1145
      ||| |||||| ||||||| ||||||   ||||||||||| |||||||
seq2  GTTAAGCCAC-GTCATAATTAACATCAGGGACAGAGAAAGGAGGTGT  1136

seq1: chr16_20591087_20592161
seq2: B6Ng01-278C02.g_63_1124 (reverse)

seq1  GGGGGTCTCCCGACTCAGCCTTGCTCCCTCTGCAAGCTTTCATCCCCAGG  50
      |||||||||||||||||||  |||| ||| ||||||||||||||||   |
seq2  GGGGGTCTCCCGACTCAGC--TGCT-CCTTTGCAAGCTTTCATCCC--AG  45

seq1  TCCCCAGGTACCCGATAGGGTCAGGTGGCAT-AGCTAGTTTTCATGACGC  99
      |||    ||| |||||||||||| ||||||| ||||||||||||||||||
seq2  TCC---AGTA-CCGATAGGGTCA-GTGGCATAAGCTAGTTTTCATGACGC  90

seq1  TGGAGCGAGGTGCCCCTCATCCAGCCCCTGTTCACGCAGGGTGGGCACCA  149
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGAAGCGAGGTGCCCCTCATCCAGCCCCTG-TCACGCAGGGTGGGCACCA  139

seq1  TGCCTGGCCTGTACTGCCCCACCAGCTGGACGCCGCTGCCGCTCACCGAC  199
      ||||| | ||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCT-GACTGTACTGCCCCACCAGCTGGACGCCGCTGCCGCTCACCGAC  188

seq1  TCCTGCGTCCGGGCCTATGCCAAGGGACCCTGCCTCAGCCTGCGTGCCCG  249
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  TCCTGCGTCCGGG-CTATGCCAAGGGACCCTGCCTCAG-CTGCGTGCCCG  236

seq1  GCTTACCTACCACAACCCACAGCCCCAGCCGGTGGAAGGTGAGACCTGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACCTACCACAACCCACAGCCCCAGCCGGTGGAAGGTGAGACCTGGT  286

seq1  GCGGGCGCGGGGAGGTAGCAAATGCCAGGTGGGGTTCGAGAGCAGGTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCGCGGGGAGGTAGCAAATGCCAGGTGGGGTTCGAGAGCAGGTCTG  336

seq1  CCTGTTCCTGCTCGCAGGCGTGTTCGTGTACCCTCTGGCTGAGGCGGAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCCTGCTCGCAGGCGTGTTCGTGTACCCTCTGGCTGAGGCGGAGG  386

seq1  TGGTATCTGGCTTCGAGGCCGAGGCGGCCGGACGGCGCGTCTCCTTCCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCTGGCTTCGAGGCCGAGGCGGCCGGACGGCGCGTCTCCTTCCAG  436

seq1  TTGCATAGCCGGCGCCGATCACAGGCCGCCTGCTGTCGCGCTCTGGGCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAGCCGGCGCCGATCACAGGCCGCCTGCTGTCGCGCTCTGGGCCC  486

seq1  GGGACTAGGGACCTCTACACCCCGCCGCTGCGCACAGGGTAAGCTCCGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTAGGGACCTCTACACCCCGCCGCTGCGCACAGGGTAAGCTCCGAG  536

seq1  CCCGAGCCCGAGCCCGCGCCCTCGAATGCCAGCTCAGGTTCTTGCACCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGCCCGAGCCCGCGCCCTCGAATGCCAGCTCAGGTTCTTGCACCCT  586

seq1  CGTGCCTCCGCTAACATCGCCAGCCTCCTTTCTTCTTCCAGACGCTGATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCCTCCGCTAACATCGCCAGCCTCCTTTCTTCTTCCAGACGCTGATT  636

seq1  TTATTTTCCATCCATTGGTTACCCCTTTATCCAGCAGTCATGGACTGGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCCATCCATTGGTTACCCCTTTATCCAGCAGTCATGGACTGGGC  686

seq1  ATCTAACCTGAACCTGGTACTGAAAGAATGTGGCCCAGGCTGAGTCTGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATCTAACCTGAACCTGGTACTGAAAGAATGTGGCCCAGGCTGAGTATGTC  736

seq1  CTTCGCAGCCAGGCAGACACAATAGGCACAAAGTAGCTTACAGGGTACCA  799
      |||||||||||||||||||||||||||||||||||| || ||||||||||
seq2  CTTCGCAGCCAGGCAGACACAATAGGCACAAAGTAGTTTCCAGGGTACCA  786

seq1  AAGACCTCTACTGTTCAGGTAGCCATAGTCTCTTTAGGTTGAGGCAGGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTCTACTGTTCAGGTAGCCATAGTCTCTTTAGGTTGAGGCAGGCT  836

seq1  ATCTCCTCCTCAGTCCCTTGCCTCTTAGACTACACACATGAGTTCCGGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTCCTCAGTCCCTTGCCTCTTAGACTACACACATGAGTTCCGGTG  886

seq1  AACCTATGAACGGACTAGCTCCAGAATCAAATCCACTGTCCTGTCTAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATGAACGGACTAGCTCCAGAATCAAATCCACTGTCCTGTCTAACA  936

seq1  GCCCAGGTTCTCACTCCTAGCTAAAGCTCAATTTATACTGCTCAGCTCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGTTCTCACTCCTAGCTAAAGCTCAATTTATACTGCTCAGCTCTA  986

seq1  CCATCCGCTGGCTCTAACTAATGTGTTTGTGCTTGTTCTCTGAGAGTTAC  1049
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCATCCGCTGGCTCTAATTAATGTGTTTGTGCTTGTTCTCTGAGAGTTAC  1036

seq1  TCAAATGCTTTCTCCTTATGGAATTC  1075
      ||||||||||||||||||||||||||
seq2  TCAAATGCTTTCTCCTTATGGAATTC  1062