BAC Information

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BAC

Clone NameB6Ng01-278D04
Chromosome16 (Build37)
Map Location 26,962,437 - 26,963,420
singlet/doubletsinglet
Overlap geneGm606
Upstream geneLeprel1, Cldn1, Cldn16, LOC100043057, Il1rap
Downstream geneOstn, Uts2d, Ccdc50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278D04.bB6Ng01-278D04.g
ACCGA078507GA078508
length9911,214
definitionB6Ng01-278D04.b B6Ng01-278D04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcagctacctctccagcactatgtctgcctatgtgctgccatac
tcctcttcatgatgataatgcattaattctctgaactgtaaggcagctcg
agttaaatgtttttccttataaaagttgccatggtcatggtgtctcttca
tagcaataaaaccctaactaagacaggccctaaggaagaactttagctaa
catctaacacatacttagaactaccaatattttttcccatttgatttcta
ctcaaatattccacactttatgaacaccatagtcatcaattcctctgatt
aactttagtctttaaagaacttccgtagtcacatctagctaaaaatctga
aactagaaacttctgggaaatggtatacaaaaatcctgttgaagccatct
gaatcaggaagggtaatgattctattaagtcccatgaagacgccttgttc
aagcaaacttcatgttctcagtcatgggatggtatgcagtgatttcctct
gtcaactcactgacttgaacttgtagaacagataattacataccttggcc
ttctcttccagacgtttaaccaaagtagaattcaggtattgtctgaggtg
attattctcttcatgtagcctagcaagttcttcctccttctgcagtagag
tatcctggagctgtgggaagcacacaaaggtgtggggtgctcccctgtat
tggtggggggggtgctcccctgtatttggttttgtaacctaaataacaat
gcactgctccccaacctgcttaaactttgattattctgtttgttttatga
acatagtttcaaaaagccctagtcctcggagtcctaaaattaaatctaca
ctccctaccacgggattgttcaagttttgcgcacctcgtattccattcat
tacaaggatttaattatatcagatgaatctttataactgtatctactagg
aattcaggtgggtatggaagaaagtgagccacaccggaact

gaattcagaactcttcagctggggaatggtggtaatgaagtgttcccgta
aaacagactgttgagaaggattcaactgcgtgaattcagaactcttcagc
tggggaacagggtacccgtaagtatagctttacaaggtaagtctggcctt
gaactttctaacgaaattcaagacagtctatcagaagtaaagtggggaat
agctttacaaggtacgtctagccttgaactttataacgaaattcaagaca
gtctatcagaagtaaagtgggaaatagctttacaaggtaagtctggtctt
gaactttctaacgaaattcaagacagtctatcagaagtaaagtgggaaat
agctttacaaggtatgtttggccttgaactttttttagtgttaggagccc
ttttgttctttttcacatgttatcaagtggttaaggcagggctgaaaatt
ctggatgaaattcagggcaatctatcagaagtaaagcggggagagagagt
aggagcaaagaggaaatatggcgcacaaaataagtatacaggcctttcca
cgggtcttgaacctgaggaaaagtttaggtcaggtaagaatacctgggga
gagattagaaggaaggaaaagaaaaaagatcaattagcggaggtttctag
gagaaggagcctatactcatcactaggtgagctcaaggagccagttctta
gtagttctgaatcagatgaaaaggctattagggcctggaaggcgctctcc
cgagcaggtgaagccactggacaactaacaaagatcgtccagggacctca
ggagtcattctcagattttgtggccagaatgacagagcagcagagcgtat
ttttgcagattcggagcaagccgcacctctggtagaatagcttatttatg
agcaagccacacaggaatgcagagcggccatagccccaagaaagaacaaa
ggcttacaaactggcttaggtttgtcggagcttggggactctcattatgc
gttacttccattcagtatgagaaattactagggcagctaacttgtcaaaa
gtcttttctcagttatattgtacagaatggacgctgaatttgaacagacc
ctcggatggagaacctggccatcatcgatcaactcacggcgcttggactg
tcctgaccaagtataccaattggatctcctcacgcacatttttccctcct
cttaagaaaatagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_26962437_26963420
seq2: B6Ng01-278D04.b_47_1037

seq1  GAATTCTCAGCTACCTCTCCAGCACTATGTCTGCCTATGTGCTGCCATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTACCTCTCCAGCACTATGTCTGCCTATGTGCTGCCATAC  50

seq1  TCCTCTTCATGATGATAATGCATTAATTCTCTGAACTGTAAGGCAGCTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCATGATGATAATGCATTAATTCTCTGAACTGTAAGGCAGCTCG  100

seq1  AGTTAAATGTTTTTCCTTATAAAAGTTGCCATGGTCATGGTGTCTCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAATGTTTTTCCTTATAAAAGTTGCCATGGTCATGGTGTCTCTTCA  150

seq1  TAGCAATAAAACCCTAACTAAGACAGGCCCTAAGGAAGAACTTTAGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATAAAACCCTAACTAAGACAGGCCCTAAGGAAGAACTTTAGCTAA  200

seq1  CATCTAACACATACTTAGAACTACCAATATTTTTTCCCATTTGATTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAACACATACTTAGAACTACCAATATTTTTTCCCATTTGATTTCTA  250

seq1  CTCAAATATTCCACACTTTATGAACACCATAGTCATCAATTCCTCTGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATATTCCACACTTTATGAACACCATAGTCATCAATTCCTCTGATT  300

seq1  AACTTTAGTCTTTAAAGAACTTCCGTAGTCACATCTAGCTAAAAATCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAGTCTTTAAAGAACTTCCGTAGTCACATCTAGCTAAAAATCTGA  350

seq1  AACTAGAAACTTCTGGGAAATGGTATACAAAAATCCTGTTGAAGCCATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAAACTTCTGGGAAATGGTATACAAAAATCCTGTTGAAGCCATCT  400

seq1  GAATCAGGAAGGGTAATGATTCTATTAAGTCCCATGAAGACGCCTTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGGAAGGGTAATGATTCTATTAAGTCCCATGAAGACGCCTTGTTC  450

seq1  AAGCAAACTTCATGTTCTCAGTCATGGGATGGTATGCAGTGATTTCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACTTCATGTTCTCAGTCATGGGATGGTATGCAGTGATTTCCTCT  500

seq1  GTCAACTCACTGACTTGAACTTGTAGAACAGATAATTACATACCTTGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTCACTGACTTGAACTTGTAGAACAGATAATTACATACCTTGGCC  550

seq1  TTCTCTTCCAGACGTTTAACCAAAGTAGAATTCAGGTATTGTCTGAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCCAGACGTTTAACCAAAGTAGAATTCAGGTATTGTCTGAGGTG  600

seq1  ATTATTCTCTTCATGTAGCCTAGCAAGTTCTTCCTCCTTCTGCAGTAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTCTTCATGTAGCCTAGCAAGTTCTTCCTCCTTCTGCAGTAGAG  650

seq1  TATCCTGGAGCTGTGGGAAGCACACAAAGGTGTGGGGTGCTCCCCTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGGAGCTGTGGGAAGCACACAAAGGTGTGGGGTGCTCCCCTGTAT  700

seq1  TGGT-GGGGGGGTGCTCCCCTGTA-TTGGTTTTGTAACCT-AATAACAAT  747
      |||| ||||||||||||||||||| ||||||||||||||| |||||||||
seq2  TGGTGGGGGGGGTGCTCCCCTGTATTTGGTTTTGTAACCTAAATAACAAT  750

seq1  GCACTGCTCCCCAACCTGCTTAAAC-TTGATTATTCTTGTTTGTTTTATG  796
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  GCACTGCTCCCCAACCTGCTTAAACTTTGATTATTC-TGTTTGTTTTATG  799

seq1  AACATAGTTTCAAAAAGCCCTAGTCCTCGGAGTCCT-AAATTAAATCTAC  845
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AACATAGTTTCAAAAAGCCCTAGTCCTCGGAGTCCTAAAATTAAATCTAC  849

seq1  ACTCCCTACCACCGGATTGTTC-AGTTTTGCGCACCTCGTATTCCATTCA  894
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  ACTCCCTACCACGGGATTGTTCAAGTTTTGCGCACCTCGTATTCCATTCA  899

seq1  TTACAAAGTATTTAAAGAGATCAGATGACTC-TCAAAACTGTAACCAC-A  942
      |||| ||| ||||||  | ||||||||| || | | ||||||| | || |
seq2  TTAC-AAGGATTTAATTATATCAGATGAATCTTTATAACTGTATCTACTA  948

seq1  GGGAATCAGGTGGGTATGGAGGAAAGTGAGCCACA-CGGAACT  984
      || | ||||||||||||||| |||||||||||||| |||||||
seq2  GGAATTCAGGTGGGTATGGAAGAAAGTGAGCCACACCGGAACT  991


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