BAC Information

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BAC

Clone NameB6Ng01-278H07
Chromosome16 (Build37)
Map Location 63,741,493 - 63,742,608
singlet/doubletsinglet
Overlap geneEpha3
Upstream geneNsun3, Arl13b, Stx19, Pros1
Downstream geneLOC100043540, Ckt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278H07.bB6Ng01-278H07.g
ACCGA078694GA078695
length1,1151,182
definitionB6Ng01-278H07.b B6Ng01-278H07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacatggcaaaaacttgtgagatgtccctatgagaacagggtgct
atagagatgagcgtgttccagattattttacacttccatacccttgcaat
ggaagggtgtctagccagttctagaacagccttcaaagtgtttttctatt
gcctaatgcaaaaacgtttggtttcatgttactgttaattattatcttca
aaagctaggccttctgttatccgtcttcacactgccttttctaactaaac
ataagatccttttggtatgctttttgttctcaattctaactgcaaacctg
ggagagagtagctacctaaaagtatgccacaactgaaatgctgaggtgtc
tttaaattgtcacaggttactatcccagatgaacaggtctattaacttcc
aaacttatcctttatccaccctgcataggttgtgttaatgatgttaatgc
caaaatccctctgtttacttgtttggtgcctgctcttgaactaagcatgc
tgctctttttctcatgcacacttgtaataattctgatgaactgaataagt
attgtcatagagttcgaactcagtgtgttttaactgatttgatacctaat
tatttctattgagaggctttctcagtgtttacccatccaatggaatatat
actgacccatttattgtttatgtactatgtatttgtatgtacatgataca
tatacatacacacatgcgcgtgcgtgtgtgcgcacacacacacacacaca
cacacacacacacacacacacacacacaaactctctcttatatcaagtac
cagcaggaatcaatattatctactgggattagaatttcagattggcattg
tagaggaagaaaataacatctgaagaacgttaaaatatcgattctgattg
cttcaaatgtactagaaagcacagggaacatcagatttagtgaaagatat
tctgaatgatttctacattagcttcgctttttcatgccagcattcatatt
cactttcctaactgccatacaaaattctgtcagagcagtgatggagagcc
tgtctagtgtatcaaatacagctcagaggcgttacccgtcactcccgcag
atcatacggaagata

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaagttcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaacacaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagaatatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atgggaggagctagagaaagtagccaagagctaaagggatctgcaaccta
taggtggacacattatgactaaccagtaccccgagctctgactctagctg
cattatatatcaaagaatgcctagtccgcaatcactgggaagaagaggcc
caatgactgcaacctttatatgccccagttcgggaactcagcaaagggat
gcctggccagggaatagtgtgggctgtgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_63741493_63742608
seq2: B6Ng01-278H07.b_43_1157

seq1  GAATTCACATGGCAAAAACTTGTGAGATGTCCCTATGAGAACAGGGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGGCAAAAACTTGTGAGATGTCCCTATGAGAACAGGGTGCT  50

seq1  ATAGAGATGAGCGTGTTCCAGATTATTTTACACTTCCATACCCTTGCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGATGAGCGTGTTCCAGATTATTTTACACTTCCATACCCTTGCAAT  100

seq1  GGAAGGGTGTCTAGCCAGTTCTAGAACAGCCTTCAAAGTGTTTTTCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGTGTCTAGCCAGTTCTAGAACAGCCTTCAAAGTGTTTTTCTATT  150

seq1  GCCTAATGCAAAAACGTTTGGTTTCATGTTACTGTTAATTATTATCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATGCAAAAACGTTTGGTTTCATGTTACTGTTAATTATTATCTTCA  200

seq1  AAAGCTAGGCCTTCTGTTATCCGTCTTCACACTGCCTTTTCTAACTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAGGCCTTCTGTTATCCGTCTTCACACTGCCTTTTCTAACTAAAC  250

seq1  ATAAGATCCTTTTGGTATGCTTTTTGTTCTCAATTCTAACTGCAAACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATCCTTTTGGTATGCTTTTTGTTCTCAATTCTAACTGCAAACCTG  300

seq1  GGAGAGAGTAGCTACCTAAAAGTATGCCACAACTGAAATGCTGAGGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGTAGCTACCTAAAAGTATGCCACAACTGAAATGCTGAGGTGTC  350

seq1  TTTAAATTGTCACAGGTTACTATCCCAGATGAACAGGTCTATTAACTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTGTCACAGGTTACTATCCCAGATGAACAGGTCTATTAACTTCC  400

seq1  AAACTTATCCTTTATCCACCCTGCATAGGTTGTGTTAATGATGTTAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATCCTTTATCCACCCTGCATAGGTTGTGTTAATGATGTTAATGC  450

seq1  CAAAATCCCTCTGTTTACTTGTTTGGTGCCTGCTCTTGAACTAAGCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCCCTCTGTTTACTTGTTTGGTGCCTGCTCTTGAACTAAGCATGC  500

seq1  TGCTCTTTTTCTCATGCACACTTGTAATAATTCTGATGAACTGAATAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTTTCTCATGCACACTTGTAATAATTCTGATGAACTGAATAAGT  550

seq1  ATTGTCATAGAGTTCGAACTCAGTGTGTTTTAACTGATTTGATACCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCATAGAGTTCGAACTCAGTGTGTTTTAACTGATTTGATACCTAAT  600

seq1  TATTTCTATTGAGAGGCTTTCTCAGTGTTTACCCATCCAATGGAATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTATTGAGAGGCTTTCTCAGTGTTTACCCATCCAATGGAATATAT  650

seq1  ACTGACCCATTTATTGTTTATGTACTATGTATTTGTATGTACATGATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCCATTTATTGTTTATGTACTATGTATTTGTATGTACATGATACA  700

seq1  TATACATACACACATGCGCGTGCGTGTGTGCGCACACACACACACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATACACACATGCGCGTGCGTGTGTGCGCACACACACACACACACA  750

seq1  CACACACACACACACACACACACACACAAACTCTCTCTTATATCAAGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACAAACTCTCTCTTATATCAAGTAC  800

seq1  CAGCAGGAATCAATATTATCTACTGGGATTAGAA-TTCAGATTGGCATTG  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAGCAGGAATCAATATTATCTACTGGGATTAGAATTTCAGATTGGCATTG  850

seq1  TAGAGGAAGAAAATAACATCTGAAGAACGTTAAAATATCGATTCTGATTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAAGAAAATAACATCTGAAGAACGTTAAAATATCGATTCTGATTG  900

seq1  CTTCAAATGTACTAGAAAGCACAGGGAACATCAGATTTAAGTGAAAGATA  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTCAAATGTACTAGAAAGCACAGGGAACATCAGATTT-AGTGAAAGATA  949

seq1  TTCTGAATGAATTTCTACATAAGCTTCGCTTTTTCATGCCAGCATTCATA  999
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  TTCTGAATG-ATTTCTACATTAGCTTCGCTTTTTCATGCCAGCATTCATA  998

seq1  TTCACTTTCCTAACTGCCATACAAAATTCTGTCAAGAGCAGTGATTGAGA  1049
      ||||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  TTCACTTTCCTAACTGCCATACAAAATTCTGTC-AGAGCAGTGATGGAGA  1047

seq1  GCCTGTCTAGTGTATCAAATACAGCTCAGA-GCGGTACCCGTCAC-CCCG  1097
      |||||||||||||||||||||||||||||| ||| |||||||||| ||||
seq2  GCCTGTCTAGTGTATCAAATACAGCTCAGAGGCGTTACCCGTCACTCCCG  1097

seq1  CAGATTCATACAGAAGATA  1116
      |||| |||||| |||||||
seq2  CAGA-TCATACGGAAGATA  1115


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