BAC Information

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BAC

Clone NameB6Ng01-278M13
Chromosome16 (Build37)
Map Location 29,053,338 - 29,193,090
singlet/doubletdoublet
Overlap genenone
Upstream geneFgf12, 1600021P15Rik, EG666717
Downstream geneHrasls, Atp13a5, Atp13a4, Opa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278M13.bB6Ng01-278M13.g
ACCGA078934GA078935
length1,0751,131
definitionB6Ng01-278M13.b B6Ng01-278M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,192,014 - 29,193,090)(29,053,338 - 29,054,484)
sequence
gaattccaggctggggctgtaaagctggaagtctatgcagcccaattcag
agccttttcccctgctgtttggctgaccttagtgaattcggtgactgtga
agaacgcaaaaactttacaaagtagcaggtttaccaggaccggtagaggg
cagctttattcacaccttagcctgagagagctgcagttttagacaagtgt
actcttcaagaagttcaagtgaagaatacagcatgagacatatttcaata
ctcagatgaaaggccaactgggacccaggactctggaccctttctgggta
gtcctctctcaaaggatactgagccatagtagtcactggtagcacttgga
tatgtgtctatccgtatcctgaactgaacggtgacccaaggccaaataaa
agctctattataagtatcattgtgtacctatctgctgactgactttgggt
ttcctcattgtaacccctgagaactggggaaattctccatcattagatat
gcagtagggctaatagtctgtacatgatgatgagtttatgtgggccaaag
gcattaaaaaacctggtggaataatggcaaggaaaattacaatggagaat
aagcatgatttcagctaattattattattaagaattattactgcagtcac
tgtgtatgaggcacaatgtttgaggattttcttacaggcttttaaccagt
ggtactgtggatagaatggaatccagtccaaaggttgtagattgactttt
taaaaaaaacatatttcaactacatatcatctaaaagctggcatattttt
gatgtaaaaacacaaagagattgacaagaaagagagagagagagagagag
agagagagagagagagaggacaaacagcaaagctggaggagaggaaccaa
tgctagaacacagacttaaataaagatgtaacactataaatgtacacaca
cctaaaaacagacaccaaaacacaccatgaagaaaaccaacaaaaacaag
gaaatctacaaaaacatatctgaaagtttaaaggcccagtttgaatgatg
ataaaattagacaaactacacacac

gaattctgtgtaatgtcacatagaaaatgctcaactactactattactaa
tgataataaagtaaggaattaaaacataaaaacaaatttatttgaaagac
aacatttgataattatcaagtcaaaaggttaattacaaaataaaaatact
catttttaaatgtaaacaaaggaactacatgtaaaatttcatgatgtatt
catttaaaactaactctttttaaattttatttattttgttcttcctttac
tattagttgggtgttggtgagattttaaaattgatttctctgtaaaacta
attaagagaacaaaattggaacaaatagaatgtaggaaaacaatcaaatt
agaaagtaattaaatgaaaaggataaaaaaattatcacacatacaaagac
ttttttgagtgaaaataagacaaattcgagaaaaatacatataaatatac
aatgaaatacaagaggaaaatataaatgtgtccaaagtcttaaaaacata
ggatatgttcacgagctacttttgcgttccattaaataagataaataaca
aatggataaagtggagaatgtaaataatatcaattataaaactaaggaag
atcttttaaaacgatcatattgaaaaatttttttaaaacctaatcgcatc
tctctaatatatgacagttttgtaggtaaatttcttcaatcctaaatgga
aaaaactcttaaaatgcaaattaattcagaaaatagagggaaaaagaaga
aagtaatatagctaactttaaagggtacagttatagtgtgttaatactaa
tagacacatactaggcattgcgataccgatagacttagtgctacctgtgt
aagggtaagactgtttctaaacgggagtaataattcagaattaagaatcc
actagtatatctgttagactaccagtttcaacaggtgtggggaaagcagc
aaaatggagaattgagctttagaaaatactatttattgtctcatttcaga
agatactaggcagtttcgacaaatcccaccccatttgaaaggagaaatag
tcgacatttgctcagaattacagctattgtctggtgaagagacagcctag
agctctcggcatatccatagataaggctatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_29192014_29193090
seq2: B6Ng01-278M13.b_44_1118 (reverse)

seq1  GTGTGTGTATGTTTGTCTAATTTTATCAATCATTCAAACTGGGCCTTTAA  50
      ||||||||| ||||||||||||||||| ||||||||||||||||||||||
seq2  GTGTGTGTA-GTTTGTCTAATTTTATC-ATCATTCAAACTGGGCCTTTAA  48

seq1  ACTCTCAGATATGTTTTGTTAGATTTCCTTGTTTTTGTTGGTTTTCTTCA  100
      ||| |||||||||||||  |||||||||||||||||||||||||||||||
seq2  ACTTTCAGATATGTTTTTGTAGATTTCCTTGTTTTTGTTGGTTTTCTTCA  98

seq1  TGGTGTGTTTTGGTGTCTGTTTTTAGGTGTGTGTACATTTATAGTGTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTTTTGGTGTCTGTTTTTAGGTGTGTGTACATTTATAGTGTTAC  148

seq1  ATCTTTATTTAAGTCTGTGTTCTAGCATTGGTTCCTCTCCTCCAGCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATTTAAGTCTGTGTTCTAGCATTGGTTCCTCTCCTCCAGCTTTG  198

seq1  CTGTTTGTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTC  248

seq1  TTGTCAATCTCTTTGTGTTTTTACATCAAAAATATGCCAGCTTTTAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAATCTCTTTGTGTTTTTACATCAAAAATATGCCAGCTTTTAGATG  298

seq1  ATATGTAGTTGAAATATGTTTTTTTTAAAAAGTCAATCTACAACCTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAGTTGAAATATGTTTTTTTTAAAAAGTCAATCTACAACCTTTGG  348

seq1  ACTGGATTCCATTCTATCCACAGTACCACTGGTTAAAAGCCTGTAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATTCCATTCTATCCACAGTACCACTGGTTAAAAGCCTGTAAGAAA  398

seq1  ATCCTCAAACATTGTGCCTCATACACAGTGACTGCAGTAATAATTCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAAACATTGTGCCTCATACACAGTGACTGCAGTAATAATTCTTAA  448

seq1  TAATAATAATTAGCTGAAATCATGCTTATTCTCCATTGTAATTTTCCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAATTAGCTGAAATCATGCTTATTCTCCATTGTAATTTTCCTTG  498

seq1  CCATTATTCCACCAGGTTTTTTAATGCCTTTGGCCCACATAAACTCATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATTCCACCAGGTTTTTTAATGCCTTTGGCCCACATAAACTCATCA  548

seq1  TCATGTACAGACTATTAGCCCTACTGCATATCTAATGATGGAGAATTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTACAGACTATTAGCCCTACTGCATATCTAATGATGGAGAATTTCC  598

seq1  CCAGTTCTCAGGGGTTACAATGAGGAAACCCAAAGTCAGTCAGCAGATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTCAGGGGTTACAATGAGGAAACCCAAAGTCAGTCAGCAGATAG  648

seq1  GTACACAATGATACTTATAATAGAGCTTTTATTTGGCCTTGGGTCACCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAATGATACTTATAATAGAGCTTTTATTTGGCCTTGGGTCACCGT  698

seq1  TCAGTTCAGGATACGGATAGACACATATCCAAGTGCTACCAGTGACTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCAGGATACGGATAGACACATATCCAAGTGCTACCAGTGACTACT  748

seq1  ATGGCTCAGTATCCTTTGAGAGAGGACTACCCAGAAAGGGTCCAGAGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGTATCCTTTGAGAGAGGACTACCCAGAAAGGGTCCAGAGTCC  798

seq1  TGGGTCCCAGTTGGCCTTTCATCTGAGTATTGAAATATGTCTCATGCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCCAGTTGGCCTTTCATCTGAGTATTGAAATATGTCTCATGCTGT  848

seq1  ATTCTTCACTTGAACTTCTTGAAGAGTACACTTGTCTAAAACTGCAGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCACTTGAACTTCTTGAAGAGTACACTTGTCTAAAACTGCAGCTC  898

seq1  TCTCAGGCTAAGGTGTGAATAAAGCTGCCCTCTACCGGTCCTGGTAAACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGCTAAGGTGTGAATAAAGCTGCCCTCTACCGGTCCTGGTAAACC  948

seq1  TGCTACTTTGTAAAGTTTTTGCGTTCTTCACAGTCACCGAATTCACTAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTTTGTAAAGTTTTTGCGTTCTTCACAGTCACCGAATTCACTAAG  998

seq1  GTCAGCCAAACAGCAGGGGAAAAGGCTCTGAATTGGGCTGCATAGACTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCAAACAGCAGGGGAAAAGGCTCTGAATTGGGCTGCATAGACTTC  1048

seq1  CAGCTTTACAGCCCCAGCCTGGAATTC  1077
      |||||||||||||||||||||||||||
seq2  CAGCTTTACAGCCCCAGCCTGGAATTC  1075


seq1: chr16_29053338_29054484
seq2: B6Ng01-278M13.g_69_1199

seq1  GAATTCTGTGTAATGTCACATAGAAAATGCTCAACTACTACTATTACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTAATGTCACATAGAAAATGCTCAACTACTACTATTACTAA  50

seq1  TGATAATAAAGTAAGGAATTAAAACATAAAAACAAATTTATTTGAAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATAAAGTAAGGAATTAAAACATAAAAACAAATTTATTTGAAAGAC  100

seq1  AACATTTGATAATTATCAAGTCAAAAGGTTAATTACAAAATAAAAATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGATAATTATCAAGTCAAAAGGTTAATTACAAAATAAAAATACT  150

seq1  CATTTTTAAATGTAAACAAAGGAACTACATGTAAAATTTCATGATGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAAATGTAAACAAAGGAACTACATGTAAAATTTCATGATGTATT  200

seq1  CATTTAAAACTAACTCTTTTTAAATTTTATTTATTTTGTTCTTCCTTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAACTAACTCTTTTTAAATTTTATTTATTTTGTTCTTCCTTTAC  250

seq1  TATTAGTTGGGTGTTGGTGAGATTTTAAAATTGATTTCTCTGTAAAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTTGGGTGTTGGTGAGATTTTAAAATTGATTTCTCTGTAAAACTA  300

seq1  ATTAAGAGAACAAAATTGGAACAAATAGAATGTAGGAAAACAATCAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAGAACAAAATTGGAACAAATAGAATGTAGGAAAACAATCAAATT  350

seq1  AGAAAGTAATTAAATGAAAAGGATAAAAAAATTATCACACATACAAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTAATTAAATGAAAAGGATAAAAAAATTATCACACATACAAAGAC  400

seq1  TTTTTTGAGTGAAAATAAGACAAATTCGAGAAAAATACATATAAATATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGTGAAAATAAGACAAATTCGAGAAAAATACATATAAATATAC  450

seq1  AATGAAATACAAGAGGAAAATATAAATGTGTCCAAAGTCTTAAAAACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATACAAGAGGAAAATATAAATGTGTCCAAAGTCTTAAAAACATA  500

seq1  GGATATGTTCACGAGCTACTTTTGCGTTCCATTAAATAAGATAAATAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGTTCACGAGCTACTTTTGCGTTCCATTAAATAAGATAAATAACA  550

seq1  AATGGATAAAGTGGAGAATGTAAATAATATCAATTATAAAACTAAGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATAAAGTGGAGAATGTAAATAATATCAATTATAAAACTAAGGAAG  600

seq1  ATCTTTTAAAACGATCATATTGAAAAATTTTTTTAAAACCTAATCGCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTAAAACGATCATATTGAAAAATTTTTTTAAAACCTAATCGCATC  650

seq1  TCTCTAATATATGACAGTTTTGTAGGTAAATTTCTTCAATCCTAAATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAATATATGACAGTTTTGTAGGTAAATTTCTTCAATCCTAAATGGA  700

seq1  AAAAACTCTTAAAATGCAAATTAATTCAGAAAATAGAGGGAAAAAGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTCTTAAAATGCAAATTAATTCAGAAAATAGAGGGAAAAAGAAGA  750

seq1  AAGTAATATAGCTAACTTTAAAGGGTACAGTTATAGTGTGTTAATACTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATATAGCTAACTTTAAAGGGTACAGTTATAGTGTGTTAATACTAA  800

seq1  TAGACACATACTAGGCATTGCGATACCGATAGACTTAGTGCTACCTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACATACTAGGCATTGCGATACCGATAGACTTAGTGCTACCTGTGT  850

seq1  AAGGGTAAGACTGTTTCTAAACGGGAGTAATAATTCAGAATTAAGAATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAAGACTGTTTCTAAACGGGAGTAATAATTCAGAATTAAGAATCC  900

seq1  ACTAGTATAATCTGTTAGACTACCAGTTTCAACAGGGTGTGGGGAAAGCA  950
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  ACTAGTAT-ATCTGTTAGACTACCAGTTTCAACA-GGTGTGGGGAAAGCA  948

seq1  GGCAAAATGGAGAATTGAGCTTTAG-AAATACTATTTAATTTGTCTCATT  999
       |||||||||||||||||||||||| ||||||||||||  |||||||| |
seq2  -GCAAAATGGAGAATTGAGCTTTAGAAAATACTATTTA--TTGTCTCA-T  994

seq1  TTCAGAAGATACCTAGGCAGTTTCGACAAAATCCCACCCCATTTGAAAAG  1049
      ||||||||||| ||||||||||||||| ||||||||||||||||| ||||
seq2  TTCAGAAGATA-CTAGGCAGTTTCGAC-AAATCCCACCCCATTTG-AAAG  1041

seq1  GAGGAAATAGTCCGAACATTTTGGCTTCAGAATTTTACAGCCTATTGTCT  1099
      || |||||||||   ||||||  || ||||||  |||||| |||||||||
seq2  GA-GAAATAGTC--GACATTT--GC-TCAGAA--TTACAG-CTATTGTCT  1082

seq1  GTGAAAGAG-CAGGCTAGAGCT-TCTGCATTATCAATAGATAAAGCTATC  1147
      |   ||||| ||| |||||||| || ||| |||| |||||||| ||||||
seq2  GGTGAAGAGACAGCCTAGAGCTCTCGGCA-TATCCATAGATAAGGCTATC  1131


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