BAC Information

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BAC

Clone NameB6Ng01-278O11
Chromosome16 (Build37)
Map Location 21,391,043 - 21,534,007
singlet/doubletdoublet
Overlap geneVps8
Upstream geneAbcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915, 2310042E22Rik, Ephb3, 6430590I03Rik
Downstream gene2510009E07Rik, Ehhadh, LOC100043489, LOC546659, Map3k13, LOC624037, Tmem41a, Liph, Senp2, EG239760, Igf2bp2, EG545152, EG666421, Sfrs10, LOC100043507, Etv5, Dgkg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278O11.bB6Ng01-278O11.g
ACCGA079025GA079026
length550522
definitionB6Ng01-278O11.b B6Ng01-278O11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,391,043 - 21,391,598)(21,533,486 - 21,534,007)
sequence
cttgcagtacttttttttcagatggcttaatttactctctttgttgtatt
tcgacagatccaggtgtttggacggagctggtcttggtccccactcccct
ctcctcagatctctgaaaccgtggctctcaccagactgagccttgtccag
gaggtgaccaggttcccctctcccatcacgcgcctacctgaaacaccacc
aggaagatggcatgggggaggctaccccagaccagaaagcccagtcccag
agatcgggaggggatgtgcctgagggggtggggaggagagggcaaaattc
cagagacaagaatcctctatggagacagcccgctgggctttcagccttcc
atctgggttccactaaaaacacattttgcgtgtttctgttgttcttaagt
ctgggtttatttcaagagggggaaattatgaagaaacatctctcccctca
ttttaacagcacctgtgcttggtaggttgtcatggggcttgcccctcctg
gaggtgaaaaagagggggttggcaccaatccctagaggttccaggagtgt

gaattctctgtatcttactggagagtccaagagttgaggcaaactcctgt
aacatctgctgctgctttcttagcaaaagttaacctggagaacagccttt
cacatggtaaaggtttaaaggtttgatgggccctgttgccactgaggtag
cgaatgtgccatacttcattcgaagctctggcagaagcctggagatagtg
ctgagccctcccttcattagtgaatcttctccctgcagcaggtagagttc
atggggaaaccagctggcagcagtgctgataacaagtggtgcaggcatgc
tcagtcctacacgggatgctataccaccccctccatggctcaggaaccca
cagaagagggggtggaggatatgagaaccaggggacagggagaaagacat
cttctggacctgacacagcggatgtactcatgcactccctgcagctgtgc
ctgcctgtaccacactgagcccatccttttcatgctgggtggaggagggg
cccatgaggctccgtccccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_21391043_21391598
seq2: B6Ng01-278O11.b_46_600

seq1  GAATTCCTTGCAGTACTTTTTTTTCAGATGGCTTAATTTACTCTCTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGCAGTACTTTTTTTTCAGATGGCTTAATTTACTCTCTTTGT  50

seq1  TGTATTTCGACAGATCCAGGTGTTTGGACGGAGCTGGTCTTGGTCCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCGACAGATCCAGGTGTTTGGACGGAGCTGGTCTTGGTCCCCAC  100

seq1  TCCCCTCTCCTCAGATCTCTGAAACCGTGGCTCTCACCAGACTGAGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTCCTCAGATCTCTGAAACCGTGGCTCTCACCAGACTGAGCCTT  150

seq1  GTCCAGGAGGTGACCAGGTTCCCCTCTCCCATCACGCGCCTACCTGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGAGGTGACCAGGTTCCCCTCTCCCATCACGCGCCTACCTGAAAC  200

seq1  ACCACCAGGAAGATGGCATGGGGGAGGCTACCCCAGACCAGAAAGCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAGGAAGATGGCATGGGGGAGGCTACCCCAGACCAGAAAGCCCAG  250

seq1  TCCCAGAGATCGGGAGGGGATGTGCCTGAGGGGGTGGGGAGGAGAGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGATCGGGAGGGGATGTGCCTGAGGGGGTGGGGAGGAGAGGGCA  300

seq1  AAATTCCAGAGACAAGAATCCTCTATGGAGACAGCCCGCTGGGCTTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCAGAGACAAGAATCCTCTATGGAGACAGCCCGCTGGGCTTTCAG  350

seq1  CCTTCCATCTGGGTTCCACTAAAAACACATTTTGCGTGTTTCTGTTGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCATCTGGGTTCCACTAAAAACACATTTTGCGTGTTTCTGTTGTTC  400

seq1  TTAAGTCTGGGTTTATTTCAAGAGGGGGAAATTATGAAGAAACATCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCTGGGTTTATTTCAAGAGGGGGAAATTATGAAGAAACATCTCTC  450

seq1  CCCTCATTTTAACAGCAGCCTGTGCTTGGTAGGTTGTCATGTGGCTTGCC  500
      ||||||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  CCCTCATTTTAACAGCA-CCTGTGCTTGGTAGGTTGTCATGGGGCTTGCC  499

seq1  CCTCCTGGAGGTGAAAAAGAGGGGGTTGGCACGAATCCCAAGAGGTTCTA  550
      |||||||||||||||||||||||||||||||| |||||| |||||||| |
seq2  CCTCCTGGAGGTGAAAAAGAGGGGGTTGGCACCAATCCCTAGAGGTTCCA  549

seq1  GGAGTG  556
      ||||||
seq2  GGAGTG  555

seq1: chr16_21533486_21534007
seq2: B6Ng01-278O11.g_69_590 (reverse)

seq1  CAGGGGGACGGAGCCTCATGGGCCCCTCCTCCACCCAGCATGAAAAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGACGGAGCCTCATGGGCCCCTCCTCCACCCAGCATGAAAAGGAT  50

seq1  GGGCTCAGTGTGGTACAGGCAGGCACAGCTGCAGGGAGTGCATGAGTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAGTGTGGTACAGGCAGGCACAGCTGCAGGGAGTGCATGAGTACA  100

seq1  TCCGCTGTGTCAGGTCCAGAAGATGTCTTTCTCCCTGTCCCCTGGTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCTGTGTCAGGTCCAGAAGATGTCTTTCTCCCTGTCCCCTGGTTCTC  150

seq1  ATATCCTCCACCCCCTCTTCTGTGGGTTCCTGAGCCATGGAGGGGGTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTCCACCCCCTCTTCTGTGGGTTCCTGAGCCATGGAGGGGGTGGT  200

seq1  ATAGCATCCCGTGTAGGACTGAGCATGCCTGCACCACTTGTTATCAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATCCCGTGTAGGACTGAGCATGCCTGCACCACTTGTTATCAGCAC  250

seq1  TGCTGCCAGCTGGTTTCCCCATGAACTCTACCTGCTGCAGGGAGAAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCAGCTGGTTTCCCCATGAACTCTACCTGCTGCAGGGAGAAGATT  300

seq1  CACTAATGAAGGGAGGGCTCAGCACTATCTCCAGGCTTCTGCCAGAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATGAAGGGAGGGCTCAGCACTATCTCCAGGCTTCTGCCAGAGCTT  350

seq1  CGAATGAAGTATGGCACATTCGCTACCTCAGTGGCAACAGGGCCCATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATGAAGTATGGCACATTCGCTACCTCAGTGGCAACAGGGCCCATCAA  400

seq1  ACCTTTAAACCTTTACCATGTGAAAGGCTGTTCTCCAGGTTAACTTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAAACCTTTACCATGTGAAAGGCTGTTCTCCAGGTTAACTTTTGC  450

seq1  TAAGAAAGCAGCAGCAGATGTTACAGGAGTTTGCCTCAACTCTTGGACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAGCAGCAGCAGATGTTACAGGAGTTTGCCTCAACTCTTGGACTC  500

seq1  TCCAGTAAGATACAGAGAATTC  522
      ||||||||||||||||||||||
seq2  TCCAGTAAGATACAGAGAATTC  522