BAC Information

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BAC

Clone NameB6Ng01-281I14
Chromosome16 (Build37)
Map Location 73,901,176 - 74,030,397
singlet/doubletdoublet
Overlap geneRobo2
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream geneLOC665042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281I14.bB6Ng01-281I14.g
ACCGA080988GA080989
length1,0751,091
definitionB6Ng01-281I14.b B6Ng01-281I14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,029,357 - 74,030,397)(73,901,176 - 73,902,257)
sequence
gaattcttagtttcgtggaatatgcgattcccagaactgcatgattcttt
cagaagagaaactgaatagaaccacttacaactcccttcttgtgcaattt
tgaacaaagtggctctttacagttagccctggaaaatgtccctgtattaa
ttgtctgggagctctattgtttagagcctgtggggctgggaagcagagat
gctgaacaggtgctagctctcctgctggggagatctgccttgctcatgtt
cagtgtgcacctcaaggacatgcgctgagttgtgctcccgataaatatcc
actttgattagattgactagtggagactgctcaattaagacaattttaga
aaaagaaaagaaatactaagaacatggtgacagcaatgtaaataaaccat
tgtccaaaaaaaaaaaaaaaaaaaaaaaaaaaagtccccataagccaata
aagaaggaaaggtggaaggcaaaattgtcttttgtgttaaataagtattt
tgcccatttgtttctggagcaaaaagtcacacaaactgctatggaagtta
ttatgagttttttgtttgtttgtttgtttgtttgttttttgtttgtttgt
ttgtttgttttttacaaatgccagcatgatgcacatgcagtctattgtcc
aggttgttggcttggaggtcttgttctgacactaattgcctatgacgttt
gcatctatctctactttctaaaaaagatgtttgagaaattttctttagca
ctaaaaatgaagatgaccttggaggagctattgaaactctgttgttttac
atcctgaagatgcagaagtatgatggtagtttaatcactaccctctgctt
gggcatgtttctacctggaaaaggtttatccaaatgattgtaatttatgc
tctaaagcactggaaaataagtatacaggtggaataaaacacaagaaggg
tggatattagaagcataaactgaaatccagctgtaaaagaattaagggat
gaaaaattaagggaatgcctcaaattgtggttgggttaaatggcaacatt
ccttttccatctggcctaaaaatat

gaattctaaaataacatatcttgtcattgatttttattcaccatctaagc
tgtttaatttctagaatggccaaaatagcatttgcccatggcagctaaaa
ttctgatgcctatttaatttgacttgaaattatatagcttggtaattgta
taatatccttggagattttatcttctaagaatcaaggctattgcatgcac
attgaaataaactggaaggagatggaattacaaatgactgtggaaaataa
taaaactatataatccaatgcatttacttaaattaaatttattattcaat
tctttgtggaattatttcaagtaagtcaattcactagagtatctcactgg
cccactgtgggttagctattgtcaatcagtgacagtccaatgacataggt
accttattattctcttatttttcaggaaagtgaatgtgggctgatgtggg
ctgatgggggtggagtaaaaagcaaccaagcatctctagtctgaatcttt
tttttcctaagacccagctcatgtaattgtgcccacagtaatgaacccag
cttagaaatctacacttaatacttcaacacagctttgcaacatcctataa
agacttttgcttctattgctgtgtttatccttgtgttcaggtagagttcc
agcctacacctttgctcaaactatgaaattgtctttgaatctctctcttt
atggcatacattaacttacatttacaaatctggttgtttccagctccaat
accttacctttcttattgcttgctttcactgatccactgagggtgccatg
aagcacccccatttattgttttgtgatctccaactgtctctatttttata
cttttgggccatttattcttgcctatacaaaatctaggctgacatattcg
aattaaaaatataatatcatgccactcatttaccttaaaaaataaaaaaa
tatactaaaatggatttcaaacacacacatacacacacacacacatcccc
ccacacacatccccccccacacacaaacacacacaccacacacatacgcc
acacgtcacacatcaaagcacgacacatcacgacaacacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_74029357_74030397
seq2: B6Ng01-281I14.b_48_1122 (reverse)

seq1  ATATTTTTA-GCCAGATGGAAAA-GAATG-TGACA-TTAACCCA--CACA  44
      ||||||||| ||||||||||||| ||||| || || ||||||||  ||||
seq2  ATATTTTTAGGCCAGATGGAAAAGGAATGTTGCCATTTAACCCAACCACA  50

seq1  AATTGA-GCA-TCCCTT-ATTTTTCAT-CCTTAA-TCTTTTACAGCT-GA  88
      | |||| ||| |||||| ||||||||| |||||| |||||||||||| ||
seq2  ATTTGAGGCATTCCCTTAATTTTTCATCCCTTAATTCTTTTACAGCTGGA  100

seq1  ATTCAGTTAATGCTTCTAATATC--ACCTTC-TGTGTTT--ATCCA-CTG  132
       ||||||| ||||||||||||||   ||||| |||||||   |||| |||
seq2  TTTCAGTTTATGCTTCTAATATCCACCCTTCTTGTGTTTTATTCCACCTG  150

seq1  TATAC-TATTTT-CAGTGC-TTAGA-CAT-AATTAC-ATCATTT-GAT-A  174
      ||||| |||||| |||||| ||||| ||| |||||| ||||||| ||| |
seq2  TATACTTATTTTCCAGTGCTTTAGAGCATAAATTACAATCATTTGGATAA  200

seq1  ACCTTT--CAGGTAG-AACATGCCAAAGCAGAGGGTAGTGATT-AACTA-  219
      ||||||  ||||||| |||||||| |||||||||||||||||| ||||| 
seq2  ACCTTTTCCAGGTAGAAACATGCCCAAGCAGAGGGTAGTGATTAAACTAC  250

seq1  CATCATACTTCTGCATCTTCAGGATGTAAAAC-ACAGAGTTTCAATAGCT  268
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CATCATACTTCTGCATCTTCAGGATGTAAAACAACAGAGTTTCAATAGCT  300

seq1  CCTCCAAGGTCATCTTCATTTTTAGTGCTAAAG-AAATTTCTCAAACATC  317
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTCCAAGGTCATCTTCATTTTTAGTGCTAAAGAAAATTTCTCAAACATC  350

seq1  TTTTTTAGAAAGTAGAGATAGATGC-AACGTCATAGGCAATTAGTGTCAG  366
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTTTTAGAAAGTAGAGATAGATGCAAACGTCATAGGCAATTAGTGTCAG  400

seq1  AACAAGACCTCCAAGCCAACAACCTGGACAATAGACTGCATGTGCATCAT  416
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGACCTCCAAGCCAACAACCTGGACAATAGACTGCATGTGCATCAT  450

seq1  GCTGGCATTTGTAAAAAACAAACAAACAAACAAACAAAAAACAAACAAAC  466
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCATTTGTAAAAAACAAACAAACAAACAAACAAAAAACAAACAAAC  500

seq1  AAACAAACAAACAAAAAACTCATAATAACTTCCATAGCAGTTTGTGTGAC  516
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAAAAACTCATAATAACTTCCATAGCAGTTTGTGTGAC  550

seq1  TTTTTGCTCCAGAAACAAATGGGCAAAATACTTATTTAACACAAAAGACA  566
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTCCAGAAACAAATGGGCAAAATACTTATTTAACACAAAAGACA  600

seq1  ATTTTGCCTTCCACCTTTCCTTCTTTATTGGCTTATGGGGACTTTTTTTT  616
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCCTTCCACCTTTCCTTCTTTATTGGCTTATGGGGACTTTTTTTT  650

seq1  TTTTTTTTTTTTTTTTTTTTGGACAATGGTTTATTTACATTGCTGTCACC  666
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTGGACAATGGTTTATTTACATTGCTGTCACC  700

seq1  ATGTTCTTAGTATTTCTTTTCTTTTTCTAAAATTGTCTTAATTGAGCAGT  716
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTAGTATTTCTTTTCTTTTTCTAAAATTGTCTTAATTGAGCAGT  750

seq1  CTCCACTAGTCAATCTAATCAAAGTGGATATTTATCGGGAGCACAACTCA  766
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTAGTCAATCTAATCAAAGTGGATATTTATCGGGAGCACAACTCA  800

seq1  GCGCATGTCCTTGAGGTGCACACTGAACATGAGCAAGGCAGATCTCCCCA  816
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCATGTCCTTGAGGTGCACACTGAACATGAGCAAGGCAGATCTCCCCA  850

seq1  GCAGGAGAGCTAGCACCTGTTCAGCATCTCTGCTTCCCAGCCCCACAGGC  866
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGAGCTAGCACCTGTTCAGCATCTCTGCTTCCCAGCCCCACAGGC  900

seq1  TCTAAACAATAGAGCTCCCAGACAATTAATACAGGGACATTTTCCAGGGC  916
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACAATAGAGCTCCCAGACAATTAATACAGGGACATTTTCCAGGGC  950

seq1  TAACTGTAAAGAGCCACTTTGTTCAAAATTGCACAAGAAGGGAGTTGTAA  966
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTAAAGAGCCACTTTGTTCAAAATTGCACAAGAAGGGAGTTGTAA  1000

seq1  GTGGTTCTATTCAGTTTCTCTTCTGAAAGAATCATGCAGTTCTGGGAATC  1016
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCTATTCAGTTTCTCTTCTGAAAGAATCATGCAGTTCTGGGAATC  1050

seq1  GCATATTCCACGAAACTAAGAATTC  1041
      |||||||||||||||||||||||||
seq2  GCATATTCCACGAAACTAAGAATTC  1075


seq1: chr16_73901176_73902257
seq2: B6Ng01-281I14.g_67_1157

seq1  GAATTCTAAAATAACATATCTTGTCATTGATTTTTATTCACCATCTAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAATAACATATCTTGTCATTGATTTTTATTCACCATCTAAGC  50

seq1  TGTTTAATTTCTAGAATGGCCAAAATAGCATTTGCCCATGGCAGCTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATTTCTAGAATGGCCAAAATAGCATTTGCCCATGGCAGCTAAAA  100

seq1  TTCTGATGCCTATTTAATTTGACTTGAAATTATATAGCTTGGTAATTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGCCTATTTAATTTGACTTGAAATTATATAGCTTGGTAATTGTA  150

seq1  TAATATCCTTGGAGATTTTATCTTCTAAGAATCAAGGCTATTGCATGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCCTTGGAGATTTTATCTTCTAAGAATCAAGGCTATTGCATGCAC  200

seq1  ATTGAAATAAACTGGAAGGAGATGGAATTACAAATGACTGTGGAAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATAAACTGGAAGGAGATGGAATTACAAATGACTGTGGAAAATAA  250

seq1  TAAAACTATATAATCCAATGCATTTACTTAAATTAAATTTATTATTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTATATAATCCAATGCATTTACTTAAATTAAATTTATTATTCAAT  300

seq1  TCTTTGTGGAATTATTTCAAGTAAGTCAATTCACTAGAGTATCTCACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGGAATTATTTCAAGTAAGTCAATTCACTAGAGTATCTCACTGG  350

seq1  CCCACTGTGGGTTAGCTATTGTCAATCAGTGACAGTCCAATGACATAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGTGGGTTAGCTATTGTCAATCAGTGACAGTCCAATGACATAGGT  400

seq1  ACCTTATTATTCTCTTATTTTTCAGGAAAGTGAATGTGGGCTGATGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATTATTCTCTTATTTTTCAGGAAAGTGAATGTGGGCTGATGTGGG  450

seq1  CTGATGGGGGTGGAGTAAAAAGCAACCAAGCATCTCTAGTCTGAATCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGGGGTGGAGTAAAAAGCAACCAAGCATCTCTAGTCTGAATCTTT  500

seq1  TTTTTCCTAAGACCCAGCTCATGTAATTGTGCCCACAGTAATGAACCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTAAGACCCAGCTCATGTAATTGTGCCCACAGTAATGAACCCAG  550

seq1  CTTAGAAATCTACACTTAATACTTCAACACAGCTTTGCAACATCCTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAATCTACACTTAATACTTCAACACAGCTTTGCAACATCCTATAA  600

seq1  AGACTTTTGCTTCTATTGCTGTGTTTATCCTTGTGTTCAGGTAGAGTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTTGCTTCTATTGCTGTGTTTATCCTTGTGTTCAGGTAGAGTTCC  650

seq1  AGCCTACACCTTTGCTCAAACTATGAAATTGTCTTTGAATCTCTCTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACACCTTTGCTCAAACTATGAAATTGTCTTTGAATCTCTCTCTTT  700

seq1  ATGGCATACATTAACTTACATTTACAAATCTGGTTGTTTCCAGCTCCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATACATTAACTTACATTTACAAATCTGGTTGTTTCCAGCTCCAAT  750

seq1  ACCTTACCTTTCTTATTGCTTGCTTTCACTGATCCACTGAGGGTGCCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACCTTTCTTATTGCTTGCTTTCACTGATCCACTGAGGGTGCCATG  800

seq1  AAGCACCCCCATTTATTGTTTTGTGATCTCCAACTGTCTCTATTTTTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCCCCATTTATTGTTTTGTGATCTCCAACTGTCTCTATTTTTATA  850

seq1  CTTTTGGGCCATTTATTCTTGCCTATACAAAATCTAGGCTGACATATTCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGGCCATTTATTCTTGCCTATACAAAATCTAGGCTGACATATTCG  900

seq1  AATTAAAAATATAATATCATGCCACTCATTTACCTT-AAAAATAAAAAAA  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AATTAAAAATATAATATCATGCCACTCATTTACCTTAAAAAATAAAAAAA  950

seq1  TATACTAAAAT-GAATTCAAACACACACATACACACACACACACATCCCC  998
      ||||||||||| || ||||||||||||||||||||||||||||||| |||
seq2  TATACTAAAATGGATTTCAAACACACACATACACACACACACACAT-CCC  999

seq1  CCCACACACATCCCCCCCCACACACAAACACACACACCACACACATAC-A  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  CCCACACACATCCCCCCCCACACACAAACACACACACCACACACATACGC  1049

seq1  CACAC-ACACACATCAAA-CAC-ACACATCAC----ACACAC  1082
      |||||  ||||||||||| ||| |||||||||    ||||||
seq2  CACACGTCACACATCAAAGCACGACACATCACGACAACACAC  1091


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