BAC Information

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BAC

Clone NameB6Ng01-282A08
Chromosome16 (Build37)
Map Location 19,848,160 - 19,849,233
singlet/doubletsinglet
Overlap geneLOC100042935
Upstream geneMrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5
Downstream geneA930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282A08.bB6Ng01-282A08.g
ACCGA081347GA081348
length1,0831,189
definitionB6Ng01-282A08.b B6Ng01-282A08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaagtcctcctccctgagaccagttctttcatgccagctggtgc
ccacactctttcagggttcatttatggcacacatcagagtctacccacca
ggattacgaggtacttgtgtcctgggaacagaaattggacaggaaatgag
gaccgcgatagaagcagagaagaaaacagaggaaggaagtgggctagagc
tgggcaaaggttagagcttaatgacttgtgtcctggagactgggcctgta
tttgttttgtgttcaggctgttgttgtgattccaagggtggtcttcctct
ttgccatcagttctctctcatttgctaattttgacttcacttgttcctgt
ttttttgtagtaagctggatctctttcatttagtgcaaggggaagggcca
caaaagggggagcagttttatttttattatgatgctattttacttagtgc
taaagagattcaatattttctttgaatggaacttagggacaatctctttt
cctctcttgtattactacagttttatcacaaggtggcactaagtgtcttg
tgtaatggtccataaacagtaaattcacctaccttgctctgtttaggttt
acttcagttgactgcaaaaaggaaagactaaagtgagttcggtgtggggg
aaaccaagacaaagaaagagggagggataaatcacactcaggaagtggga
aaaactcataagggatccatatgttttctatttatctagaattatataga
gtgtgtatgtaaacatacatatataatgtatgtataggatttttttgaaa
atgaagttatattactttgtggctataatcctctctccaggaggtataga
ttatttaacaaaaatactaggtctgagaattgttactgataagaatccag
gaaatcccccaaacagtacaggttattgctgtcgtcctttggttgcttcc
tagaatttgaaggaagtaccttcttaaatgaagactactactcagttctg
atccgggatttggaagattaaactggatctgacctggaagctttctgtct
tcaagattagcttcatattagtattgggaagat

gaattcttatgcagaggaatattacaccttagaatggatatttttagaac
ataaacagagtaagaaattaaaagcctacatagaataagtttctgaattg
atactaaaaggaaaagagggatgttgacaattagttgggatgaatcagct
gaagttgtggtaccttttactaatgcagagattgcctttgtatgggcaca
agatgaacattggcaaagagcagacggtattacttaggagagattaagaa
caaataccccatttaaaaaaagaagaaaggggagattaaaaaaagaacaa
ataccctaaaagcaagctacttcaatttgtaaaaaggaactaattggatt
ttccctcttataataaaaagaactccaatttctggaacctcaacatttta
tactgatgctaataaattaaaaaagggaagatacagttcaaaagatgtaa
ataaagtggttgagggtccctataagtaggattcaaaaaatctgaattat
atgcaatgcttatggttatcagattttcaagagtctcttaatatagtaac
taactctcaatatgcagaaagggttgttttacacataaaatcaggatgat
tctgaactgaatccactatttactcagctacaactaatgatcagaattag
gagtcatccactatatataacacataagatcccatacaggtctgccaggt
cctctggcataaggtaataatggaattgaaaggatgtgtgctacaggctt
tggaactccatttaaaaaatgttaacagtaaaggtttaaagaaagaattc
tctatcatcctgcagcaagccaaggaaattgtgaagcaatgtcctacttt
gctcatttttataatcaaactccattacccacagaaagtaaccctaaagg
tacccaaagaaatgaatttgtcaaatggatatgtccaactttacagaaat
tcaataaaactgaaatgtgtcccatcatactattagaaacattattcagt
attttcaataaggcactgccctaagccttccaaaaaaagctgatctgtag
tatttgcatttggtttaaccattatgggcatacagtatacccattaatac
tagacagacagtgagcctgcccatatgttctatagatgaaggcatgtcta
cagatatccgtcatgacaagagttctcccacactcgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_19848160_19849233
seq2: B6Ng01-282A08.b_48_1130 (reverse)

seq1  ATCTT-CCAATACT-ATATG-AGCTAATCTTG-AGACAGAAAGCTTCCAG  46
      ||||| |||||||| ||||| ||||||||||| |||||||||||||||||
seq2  ATCTTCCCAATACTAATATGAAGCTAATCTTGAAGACAGAAAGCTTCCAG  50

seq1  GTCAGATCCAGTTTAATTCTTCCAAATCCCGGGTCAGAACTGAGTAGT-G  95
      |||||||||||||||| ||||||||||||||| ||||||||||||||| |
seq2  GTCAGATCCAGTTTAA-TCTTCCAAATCCCGGATCAGAACTGAGTAGTAG  99

seq1  TCTTCA-TTAAG-AGGTACTTCCTTCAAATTCTAGGAAGCAACC-AAGGA  142
      |||||| ||||| ||||||||||||||||||||||||||||||| |||||
seq2  TCTTCATTTAAGAAGGTACTTCCTTCAAATTCTAGGAAGCAACCAAAGGA  149

seq1  CGACAGCAATAACCTGTACTGTTTGGGGGATTTCCTGGATTCTTATCAGT  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGCAATAACCTGTACTGTTTGGGGGATTTCCTGGATTCTTATCAGT  199

seq1  AACAATTCTCAGACCTAGTATTTTTGTTAAATAATCTATACCTCCTGGAG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTCTCAGACCTAGTATTTTTGTTAAATAATCTATACCTCCTGGAG  249

seq1  AGAGGATTATAGCCAC-AAGTAATATAACTTCATTTTC-AAAAAATCCTA  290
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  AGAGGATTATAGCCACAAAGTAATATAACTTCATTTTCAAAAAAATCCTA  299

seq1  TACATACATTATATATGTATGTTTACATACACACTCTATATAATTCTAGA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATTATATATGTATGTTTACATACACACTCTATATAATTCTAGA  349

seq1  TAAATAGAAAACATATGGATCCCTTATGAGTTTTTCCCACTTCCTGAGTG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGAAAACATATGGATCCCTTATGAGTTTTTCCCACTTCCTGAGTG  399

seq1  TGATTTATCCCTCCCTCTTTCTTTGTCTTGGTTTCCCCCACACCGAACTC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATCCCTCCCTCTTTCTTTGTCTTGGTTTCCCCCACACCGAACTC  449

seq1  ACTTTAGTCTTTCCTTTTTGCAGTCAACTGAAGTAAACCTAAACAGAGCA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGTCTTTCCTTTTTGCAGTCAACTGAAGTAAACCTAAACAGAGCA  499

seq1  AGGTAGGTGAATTTACTGTTTATGGACCATTACACAAGACACTTAGTGCC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGTGAATTTACTGTTTATGGACCATTACACAAGACACTTAGTGCC  549

seq1  ACCTTGTGATAAAACTGTAGTAATACAAGAGAGGAAAAGAGATTGTCCCT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTGATAAAACTGTAGTAATACAAGAGAGGAAAAGAGATTGTCCCT  599

seq1  AAGTTCCATTCAAAGAAAATATTGAATCTCTTTAGCACTAAGTAAAATAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCATTCAAAGAAAATATTGAATCTCTTTAGCACTAAGTAAAATAG  649

seq1  CATCATAATAAAAATAAAACTGCTCCCCCTTTTGTGGCCCTTCCCCTTGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAATAAAAATAAAACTGCTCCCCCTTTTGTGGCCCTTCCCCTTGC  699

seq1  ACTAAATGAAAGAGATCCAGCTTACTACAAAAAAACAGGAACAAGTGAAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATGAAAGAGATCCAGCTTACTACAAAAAAACAGGAACAAGTGAAG  749

seq1  TCAAAATTAGCAAATGAGAGAGAACTGATGGCAAAGAGGAAGACCACCCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTAGCAAATGAGAGAGAACTGATGGCAAAGAGGAAGACCACCCT  799

seq1  TGGAATCACAACAACAGCCTGAACACAAAACAAATACAGGCCCAGTCTCC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCACAACAACAGCCTGAACACAAAACAAATACAGGCCCAGTCTCC  849

seq1  AGGACACAAGTCATTAAGCTCTAACCTTTGCCCAGCTCTAGCCCACTTCC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACAAGTCATTAAGCTCTAACCTTTGCCCAGCTCTAGCCCACTTCC  899

seq1  TTCCTCTGTTTTCTTCTCTGCTTCTATCGCGGTCCTCATTTCCTGTCCAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGTTTTCTTCTCTGCTTCTATCGCGGTCCTCATTTCCTGTCCAA  949

seq1  TTTCTGTTCCCAGGACACAAGTACCTCGTAATCCTGGTGGGTAGACTCTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTCCCAGGACACAAGTACCTCGTAATCCTGGTGGGTAGACTCTG  999

seq1  ATGTGTGCCATAAATGAACCCTGAAAGAGTGTGGGCACCAGCTGGCATGA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGCCATAAATGAACCCTGAAAGAGTGTGGGCACCAGCTGGCATGA  1049

seq1  AAGAACTGGTCTCAGGGAGGAGGACTTGGAATTC  1074
      ||||||||||||||||||||||||||||||||||
seq2  AAGAACTGGTCTCAGGGAGGAGGACTTGGAATTC  1083


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