BAC Information

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BAC

Clone NameB6Ng01-282H21
Chromosome16 (Build37)
Map Location 35,424,281 - 35,621,423
singlet/doubletdoublet
Overlap genePdia5, Sema5b, EG546663
Upstream geneKalrn, Ropn1, Ccdc14, Mylk, Ptplb, Adcy5, Sec22a
Downstream geneDirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282H21.bB6Ng01-282H21.g
ACCGA081696GA081697
length1,149237
definitionB6Ng01-282H21.b B6Ng01-282H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,620,268 - 35,621,423)(35,424,281 - 35,424,517)
sequence
gaattctattaaaaaaaaaaaacaggctgagcaaaccgagagggacaagc
caggaagcagcatcccaccagggcctctgcttcagctcctgcctccagga
tcctgccccatttgagttcctgtcctgaccttccttcagtgatgaacagg
gaagtgaaagtgtaaactgaattaatctttttctccccatcttgcctctt
ggtcatggtgtattatcacagcaataaaaccctaattgggacaccccttg
acccactaaccaggagtagtccacaaaatgagatctacgggccagcattg
agtctcacacaccaacaactctgtggtaagacagatgcagacacttgaaa
gtcagtgtttaaaattcccaaatggtaagttgagtaatttttatggacac
taagtctaacaatcaaatgtctgtctgggagtgtggcccagtggtaggct
tttcgcattcacgtgcaaggccctgagcttcaacctcggcaccatgaaac
aaagagaaaagatgaagacattcaggcttctattttgcgcgtttcttttc
agttcatttctctagtaattcactgtcattgagctgtaggtaagcatcca
tctgcaacagattgtaaattgagaagtcaaacctgcttcttcacagcaca
tagctgaggagcaaaaatagaccacagaggcatctgtctgagcacaaagt
gccctgtgtgcgagaaagctctcttggcattctgagaaacaacaagagga
ccagaagaaaaagaaaaaaaagcaaacaaaacaacaacaacaagaacaag
caaatagttaaacaggagctggggtgtgtctgctgtggagtactataaaa
ccataaaaaaagaatgaccatctcgtctatgaaatgaaaggtagaattaa
aggtggaatgctgaccaggaaggcagtaggtcaggcctgctaaactcctc
ccctgacactggtttccaaacccttttcaacaggcacagagtctggaatg
gtcatcaggtgtagggcccactctcggaaagcaaaaatctgaagcaaaat
atcagctgtgtgatgagagagagagaagagaggaaaaaactcacctccac
tctggcttagcttcctccgaattgggagtgacacgacatatccaatgtt
ctctggaatctcatgccagggaaaaggaaagggcgcttgttggagcagga
accgggctccctgaaacagatttcatccagttctacagtacacactgaaa
cccagaggaagatgggtcaatagttggcaggaccaagtttggtcaggact
gctttcaggtatccttggtcttctattcaaacattcatctcacatcagaa
ccccaaagatagactggcggggggcggggggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_35620268_35621423
seq2: B6Ng01-282H21.b_43_1191 (reverse)

seq1  AACATT-GATATTGTCGTTGTCACTCCCAATTTGGGGGAAACTAAGGCAG  49
      |||||| |||| ||||| |||||||||||||| || |||| ||||| |||
seq2  AACATTGGATA-TGTCG-TGTCACTCCCAATTCGGAGGAAGCTAAGCCAG  48

seq1  AGTGGGGTTAAGTTTTTTTTTCTTTCTCTCTCTCTCTCTCCAATCACACA  99
      ||||| | | ||||||||  ||| |   ||||||||||||  ||||||||
seq2  AGTGGAGGTGAGTTTTTTCCTCTCT---TCTCTCTCTCTC--ATCACACA  93

seq1  GCCTGATATTTTGCTCCAGATTTTTGCTTTCCGAGAGTGGGCCCTACACC  149
      | ||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  G-CTGATATTTTGCTTCAGATTTTTGCTTTCCGAGAGTGGGCCCTACACC  142

seq1  TTGATGACCATTCCCAGACTCTGTGGCCTGTTGAAA--GGGTTGGGAACC  197
       ||||||||||| ||||||||||| |||||||||||  || |||| ||||
seq2  -TGATGACCATT-CCAGACTCTGT-GCCTGTTGAAAAGGGTTTGGAAACC  189

seq1  AGTGTCAGGGGAGGAGTTTAGCAGGCCTGACCTACTGCCTTCCTGGTCAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAGGGGAGGAGTTTAGCAGGCCTGACCTACTGCCTTCCTGGTCAG  239

seq1  CATTCCACC-TTAATTCTACCTTTCATTTCATAGACGAGATGGTCATTCT  296
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCACCTTTAATTCTACCTTTCATTTCATAGACGAGATGGTCATTCT  289

seq1  TTTTTTATGGTTTTATAGTACTCCACAGCAGACACACCCCAGCTCCTGTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATGGTTTTATAGTACTCCACAGCAGACACACCCCAGCTCCTGTT  339

seq1  TAACTATTTGCTTGTTCTTGTTGTTGTTGTTTTGTTTGCTTTTTTTTCTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATTTGCTTGTTCTTGTTGTTGTTGTTTTGTTTGCTTTTTTTTCTT  389

seq1  TTTCTTCTGGTCCTCTTGTTGTTTCTCAGAATGCCAAGAGAGCTTTCTCG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGGTCCTCTTGTTGTTTCTCAGAATGCCAAGAGAGCTTTCTCG  439

seq1  CACACAGGGCACTTTGTGCTCAGACAGATGCCTCTGTGGTCTATTTTTGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGGCACTTTGTGCTCAGACAGATGCCTCTGTGGTCTATTTTTGC  489

seq1  TCCTCAGCTATGTGCTGTGAAGAAGCAGGTTTGACTTCTCAATTTACAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCTATGTGCTGTGAAGAAGCAGGTTTGACTTCTCAATTTACAAT  539

seq1  CTGTTGCAGATGGATGCTTACCTACAGCTCAATGACAGTGAATTACTAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCAGATGGATGCTTACCTACAGCTCAATGACAGTGAATTACTAGA  589

seq1  GAAATGAACTGAAAAGAAACGCGCAAAATAGAAGCCTGAATGTCTTCATC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAACTGAAAAGAAACGCGCAAAATAGAAGCCTGAATGTCTTCATC  639

seq1  TTTTCTCTTTGTTTCATGGTGCCGAGGTTGAAGCTCAGGGCCTTGCACGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTTGTTTCATGGTGCCGAGGTTGAAGCTCAGGGCCTTGCACGT  689

seq1  GAATGCGAAAAGCCTACCACTGGGCCACACTCCCAGACAGACATTTGATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCGAAAAGCCTACCACTGGGCCACACTCCCAGACAGACATTTGATT  739

seq1  GTTAGACTTAGTGTCCATAAAAATTACTCAACTTACCATTTGGGAATTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGACTTAGTGTCCATAAAAATTACTCAACTTACCATTTGGGAATTTT  789

seq1  AAACACTGACTTTCAAGTGTCTGCATCTGTCTTACCACAGAGTTGTTGGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGACTTTCAAGTGTCTGCATCTGTCTTACCACAGAGTTGTTGGT  839

seq1  GTGTGAGACTCAATGCTGGCCCGTAGATCTCATTTTGTGGACTACTCCTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGACTCAATGCTGGCCCGTAGATCTCATTTTGTGGACTACTCCTG  889

seq1  GTTAGTGGGTCAAGGGGTGTCCCAATTAGGGTTTTATTGCTGTGATAATA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGGGTCAAGGGGTGTCCCAATTAGGGTTTTATTGCTGTGATAATA  939

seq1  CACCATGACCAAGAGGCAAGATGGGGAGAAAAAGATTAATTCAGTTTACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGACCAAGAGGCAAGATGGGGAGAAAAAGATTAATTCAGTTTACA  989

seq1  CTTTCACTTCCCTGTTCATCACTGAAGGAAGGTCAGGACAGGAACTCAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTTCCCTGTTCATCACTGAAGGAAGGTCAGGACAGGAACTCAAA  1039

seq1  TGGGGCAGGATCCTGGAGGCAGGAGCTGAAGCAGAGGCCCTGGTGGGATG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAGGATCCTGGAGGCAGGAGCTGAAGCAGAGGCCCTGGTGGGATG  1089

seq1  CTGCTTCCTGGCTTGTCCCTCTCGGTTTGCTCAGCCTGTTTTTTTTTTTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCTGGCTTGTCCCTCTCGGTTTGCTCAGCCTGTTTTTTTTTTTT  1139

seq1  AATAGAATTC  1156
      ||||||||||
seq2  AATAGAATTC  1149

seq1: chr16_35424281_35424517
seq2: B6Ng01-282H21.g_71_307

seq1  CTCTGGAATCTCATGCCAGGGAAAAGGAAAGGGCGCTTGTTGGAGCAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAATCTCATGCCAGGGAAAAGGAAAGGGCGCTTGTTGGAGCAGGA  50

seq1  ACCGGGCTCCCTGAAACAGATTTCATCCAGTTCTACAGTACACACTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGCTCCCTGAAACAGATTTCATCCAGTTCTACAGTACACACTGAAA  100

seq1  CCCAGAGGAAGATGGGTCAATAGTTGGCAGGACCAAGTTTGGTCAGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGAAGATGGGTCAATAGTTGGCAGGACCAAGTTTGGTCAGGACT  150

seq1  GCTTTCAGGTATCCTTGGTCTTCTATTCAAACATTCATCTCACATCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAGGTATCCTTGGTCTTCTATTCAAACATTCATCTCACATCAGAA  200

seq1  CCCCAAAGATAGACTGGCGGGGGGCGGGGGGGGGGGA  237
      |||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGATAGACTGGCGGGGGGCGGGGGGGGGGGA  237