BAC Information

Click to search

BAC

Clone NameB6Ng01-282L13
Chromosome16 (Build37)
Map Location 64,435,605 - 64,572,087
singlet/doubletdoublet
Overlap geneCkt2
Upstream geneEpha3, LOC100043540
Downstream gene4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931, Pou1f1, Chmp2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282L13.bB6Ng01-282L13.g
ACCGA081866GA081867
length7931,144
definitionB6Ng01-282L13.b B6Ng01-282L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,435,605 - 64,436,391)(64,570,958 - 64,572,087)
sequence
gaattcttatttctctcccttctagagcatatgggtataactatttttaa
actatccaaattccctgaatctcagaacaacttactctaggggataagag
tcacattcacttacgttttccagtagcccccttctacctgaaactgaaag
ccaaaggactgtgacgtcacactaaaagcctctcagggcgagtgtttcag
gactgtgatgtcacactaaaagcctctcagggcgtgtgtttctggagacc
tctaaatcttcctctgtcaacagccattttctgtagctcttcggtgtagg
gtttgagcattgtgagatttccctgatccatgcctgctgagatgtcaact
gttagttactctgaaggtctggtttaagaacacattgtgaagatgtgtcg
ggtgcatcttccctgtcatataccgaataaagaatcccagagtagacagg
tatattttggcctccgggctcttagaatttgtctaatcccaagtggtcat
ccataaacacacatatatattagcaacactaaattcatttagcagtaata
atgaaagatgatgtcatgaagttgaaagggagtgggtgggatgcgggagg
aaatgggggcatagaaaatgggtagaaatgatgaaataaagtacttgtgt
atgaaattctaaattatattaataaaatgtgaaagagttttttagcagct
gttccatctaagagctgtgccagctcttggcagtaaagagcagtacaggc
cctatccttgagtcttctcgagggcaccatgaacacctctagt

gaattctaatttacatgtagtgaattaaaaattcttctgcaatgaccaaa
tgaaacatcactgggtatagttttttctctttaaggagtccaggataaag
ataaaggtcgtctgtatccagacgcatttcccacccaaacctgaatggga
ttccttggagaatagttataggctgtggtctgcaggctgccttgggctga
tcactgcagtcaactagtcacttagaaacatctgagaacaagaagcaatg
tgtctctttagtctgtattatttagttctttgtaactcttccaaaatgat
tcttacaaacatacaattgttcattcttgacactctgtaaactcaagaaa
ccattttttcctgcggataataacatttctactatcccttcgcatttcat
tcatgagatatatctatatatacatacatatatgcacatgcacacatata
tacagacatatatatacatttatatatatataaagctaaaattagatttg
ttcaaaattaaattaaattaaaattaaatttgttcaaaaatcatttgctt
aacagtgtgttagatatgcttttttctataagttggtaatacagaaacaa
caaaaaaggcagtaattaaatgctggtggcaggtattgttacccagttag
ctgcatatatgtatgtataaatgtatatatgtatatacacacaaacatta
ttttctcttttgagaccatttgtttcctgcagtgggctattatattcata
tctatatctatatcaacatctacatctatatatctatatctaatctatct
atctatctatctatctatctatatctatatatatatatctgtatttataa
ctccttgcccttctctggctgacaaaagagctgccctcctcagccatatg
ctattctattatggaaattaattttctccaaaagaaatttcattatttta
tttatttatttattttttaatacctttttattaggtattttctcaattac
atttccatgctattcccaaaagtccccccatacctccacccaccttccct
tacccaactaactcgtaatgtgggcctcagggcattccctgtactggggc
atataaggctgtgccaagtatccaatgggtcctctcctttgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_64435605_64436391
seq2: B6Ng01-282L13.b_42_834

seq1  GAATTCTTATTTCTCTCCCTTCTAGAGCATATGGGTATAACTATTTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTTCTCTCCCTTCTAGAGCATATGGGTATAACTATTTTTAA  50

seq1  ACTATCCAAATTCCCTGAATCTCAGAACAACTTACTCTAGGGGATAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCAAATTCCCTGAATCTCAGAACAACTTACTCTAGGGGATAAGAG  100

seq1  TCACATTCACTTACGTTTTCCAGTAGCCCCCTTCTACCTGAAACTGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTCACTTACGTTTTCCAGTAGCCCCCTTCTACCTGAAACTGAAAG  150

seq1  CCAAAGGACTGTGACGTCACACTAAAAGCCTCTCAGGGCGAGTGTTTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGACTGTGACGTCACACTAAAAGCCTCTCAGGGCGAGTGTTTCAG  200

seq1  GACTGTGATGTCACACTAAAAGCCTCTCAGGGCGTGTGTTTCTGGAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGATGTCACACTAAAAGCCTCTCAGGGCGTGTGTTTCTGGAGACC  250

seq1  TCTAAATCTTCCTCTGTCAACAGCCATTTTCTGTAGCTCTTCGGTGTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATCTTCCTCTGTCAACAGCCATTTTCTGTAGCTCTTCGGTGTAGG  300

seq1  GTTTGAGCATTGTGAGATTTCCCTGATCCATGCCTGCTGAGATGTCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGCATTGTGAGATTTCCCTGATCCATGCCTGCTGAGATGTCAACT  350

seq1  GTTAGTTACTCTGAAGGTCTGGTTTAAGAACACATTGTGAAGATGTGTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTACTCTGAAGGTCTGGTTTAAGAACACATTGTGAAGATGTGTCG  400

seq1  GGTGCATCTTCCCTGTCATATACCGAATAAAGAATCCCAGAGTAGACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATCTTCCCTGTCATATACCGAATAAAGAATCCCAGAGTAGACAGG  450

seq1  TATATTTTGGCCTCCGGGCTCTTAGAATTTGTCTAATCCCAAGTGGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTGGCCTCCGGGCTCTTAGAATTTGTCTAATCCCAAGTGGTCAT  500

seq1  CCATAAACACACATATATATTAGCAACACTAAATTCATTTAGCAGTAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAACACACATATATATTAGCAACACTAAATTCATTTAGCAGTAATA  550

seq1  ATGAAAGATGATGTCATGAAGTTGAAAGGGAGTGGGTGGGATGCGGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGATGATGTCATGAAGTTGAAAGGGAGTGGGTGGGATGCGGGAGG  600

seq1  AAATGGGGGCATAGAAAATGGGTAGAAATGATGAAATAAAGTACTTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGGGCATAGAAAATGGGTAGAAATGATGAAATAAAGTACTTGTGT  650

seq1  ATGAAATTCTAAATTATATTAATAAAATGTGAAAGAG-TTTTTAGCAGCT  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGAAATTCTAAATTATATTAATAAAATGTGAAAGAGTTTTTTAGCAGCT  700

seq1  GTTCCATCTAAGAGCTGTGCCAGCTCTTGGCAGT-AAGAGCAGTACAGGC  748
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTTCCATCTAAGAGCTGTGCCAGCTCTTGGCAGTAAAGAGCAGTACAGGC  750

seq1  CC-AACCTTGAGTC-TCTCGA-GGCACCATG-ACACCTCTAGT  787
      || | ||||||||| |||||| ||||||||| |||||||||||
seq2  CCTATCCTTGAGTCTTCTCGAGGGCACCATGAACACCTCTAGT  793


seq1: chr16_64570958_64572087
seq2: B6Ng01-282L13.g_67_1209 (reverse)

seq1  TGCAAA-GAGAGG-CCCATTGG--ACTT-GCA-AACTTTATATGCCCCAG  44
      |||||| |||||| ||||||||  |||| ||| | | |||||||||||||
seq2  TGCAAAGGAGAGGACCCATTGGATACTTGGCACAGCCTTATATGCCCCAG  50

seq1  TACAGGGGAATGCC---AGGGCCAAAATGTGGGAGTGGGTGGGTAGGGGA  91
      |||| |||||||||   ||| ||| | |  | |  | | |||||| ||||
seq2  TACA-GGGAATGCCCTGAGGCCCACATTACGAG-TTAGTTGGGTAAGGGA  98

seq1  --GTGGGTGGGAGGGTAT-GGGGGACTTTTGGG-ATAGCATTGGAAATGT  137
        ||||||||   ||||| |||||||||||||| |||||| |||||||||
seq2  AGGTGGGTGG--AGGTATGGGGGGACTTTTGGGAATAGCA-TGGAAATGT  145

seq1  AAATGAGGAAAATACCTAATAAAAA-GTA-TAAAAAATAAATAAATAAAT  185
      || ||| |||||||||||||||||| ||| ||||||||||||||||||||
seq2  AATTGA-GAAAATACCTAATAAAAAGGTATTAAAAAATAAATAAATAAAT  194

seq1  AAAATAATGAAATTTC-TTTGGAGAAAATTAA-TTCCATAATAGAATAGC  233
      |||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  AAAATAATGAAATTTCTTTTGGAGAAAATTAATTTCCATAATAGAATAGC  244

seq1  ATATGGCTGAGGA-GGCAGCTCTTTTGTCAGCCAGAGAA-GGCAAGGAGT  281
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  ATATGGCTGAGGAGGGCAGCTCTTTTGTCAGCCAGAGAAGGGCAAGGAGT  294

seq1  TATAAATACAGATATATATATATAGATATAGATAGATAGATAGATAGATA  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATACAGATATATATATATAGATATAGATAGATAGATAGATAGATA  344

seq1  GATAGATTAGATATAGATATATAGATGTAGATGTTGATATAGATATAGAT  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATTAGATATAGATATATAGATGTAGATGTTGATATAGATATAGAT  394

seq1  ATGAATATAATAGCCCACTGCAGGAAACAAATGGTCTCAAAAGAGAAAAT  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATAATAGCCCACTGCAGGAAACAAATGGTCTCAAAAGAGAAAAT  444

seq1  AATGTTTGTGTGTATATACATATATACATTTATACATACATATATGCAGC  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTGTGTGTATATACATATATACATTTATACATACATATATGCAGC  494

seq1  TAACTGGGTAACAATACCTGCCACCAGCATTTAATTACTGCCTTTTTTGT  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGGTAACAATACCTGCCACCAGCATTTAATTACTGCCTTTTTTGT  544

seq1  TGTTTCTGTATTACCAACTTATAGAAAAAAGCATATCTAACACACTGTTA  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGTATTACCAACTTATAGAAAAAAGCATATCTAACACACTGTTA  594

seq1  AGCAAATGATTTTTGAACAAATTTAATTTTAATTTAATTTAATTTTGAAC  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGATTTTTGAACAAATTTAATTTTAATTTAATTTAATTTTGAAC  644

seq1  AAATCTAATTTTAGCTTTATATATATATAAATGTATATATATGTCTGTAT  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAATTTTAGCTTTATATATATATAAATGTATATATATGTCTGTAT  694

seq1  ATATGTGTGCATGTGCATATATGTATGTATATATAGATATATCTCATGAA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTGCATGTGCATATATGTATGTATATATAGATATATCTCATGAA  744

seq1  TGAAATGCGAAGGGATAGTAGAAATGTTATTATCCGCAGGAAAAAATGGT  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGCGAAGGGATAGTAGAAATGTTATTATCCGCAGGAAAAAATGGT  794

seq1  TTCTTGAGTTTACAGAGTGTCAAGAATGAACAATTGTATGTTTGTAAGAA  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGTTTACAGAGTGTCAAGAATGAACAATTGTATGTTTGTAAGAA  844

seq1  TCATTTTGGAAGAGTTACAAAGAACTAAATAATACAGACTAAAGAGACAC  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGGAAGAGTTACAAAGAACTAAATAATACAGACTAAAGAGACAC  894

seq1  ATTGCTTCTTGTTCTCAGATGTTTCTAAGTGACTAGTTGACTGCAGTGAT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCTTGTTCTCAGATGTTTCTAAGTGACTAGTTGACTGCAGTGAT  944

seq1  CAGCCCAAGGCAGCCTGCAGACCACAGCCTATAACTATTCTCCAAGGAAT  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAAGGCAGCCTGCAGACCACAGCCTATAACTATTCTCCAAGGAAT  994

seq1  CCCATTCAGGTTTGGGTGGGAAATGCGTCTGGATACAGACGACCTTTATC  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCAGGTTTGGGTGGGAAATGCGTCTGGATACAGACGACCTTTATC  1044

seq1  TTTATCCTGGACTCCTTAAAGAGAAAAAACTATACCCAGTGATGTTTCAT  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCTGGACTCCTTAAAGAGAAAAAACTATACCCAGTGATGTTTCAT  1094

seq1  TTGGTCATTGCAGAAGAATTTTTAATTCACTACATGTAAATTAGAATTC  1130
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCATTGCAGAAGAATTTTTAATTCACTACATGTAAATTAGAATTC  1143


| Home | SequenceCutter | Blast | Download |