BAC Information

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BAC

Clone NameB6Ng01-283F08
Chromosome16 (Build37)
Map Location 87,745,236 - 87,929,247
singlet/doubletdoublet
Overlap geneLOC100039901, Grik1
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1
Downstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283F08.bB6Ng01-283F08.g
ACCGA082323GA082324
length4991,054
definitionB6Ng01-283F08.b B6Ng01-283F08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,928,743 - 87,929,247)(87,745,236 - 87,746,285)
sequence
tgcaaggcaggtcaatttaactcagctcaggattttttccagtgtctcca
aaatgtcaacaccaaggctggatactggcagtgtagaaggtaggaggagt
gggggaggtttaaacccttctgcaaagcttggagataagaagtacaatag
ccatacatgccaggtgcaacctgttaaatacagtacagctctcattccac
acacaggatgtgaaataagcgtaagggttcctgtgagtcagattggctat
gaaagagtcatgtaagagaaacttctcagtagaatcctgcctggtaaaaa
gtcactgtcctcccagactcaagccaggggattacagagattagatcgac
attctgcctgaaatgatgtggataaaatgggttttaataaaaattatcac
ggacttgtcattgctggctttcatggtctagggactttgaaccagctgtg
ggaattaggaatggtaacccctgtaatttctttgcattgagagtggtta
gaattcacacaggaggaacctggagtcaggagctgatgcagaggccatgg
aggggtgctgcttgttggcttgctccttgtggtttgctttcttatataac
ccacaactcagggtgacacaccaccaatcaatcactaattaagaaaatgc
tctacaggtggctgtttatggaggcattgtctcaattgatgttccctcct
ctttgatgactcttgctcttgtcacgttgacataaagccagccagcacaa
tgttgctgatggtggcattctaggttaggaaagacacagaagaaagtggg
ggaaaattcctggcaggaattctgtgaaaacacaagcaggatttgctcgg
aaaatagctctagcagatcttaggccatcagagttttcatgtttcccttt
tggacctgacccagccatgagtcactgggctaagactttgcagttgtgac
actctattgcttggtttatctgtttcattttatttggaaccagtgtcttg
cactgattttaacatggtgaaagggccacagttgtgaacctaggactgta
ttatttttctgtcttcgccatctccatctccatcaccaccaccaccacca
tcagcagcagcagcatcagcatcagcatcagtatcagcagcagcagcagc
ctgcactgtatattcttgtccacccttgtgcatagctgtggctctcagtg
tgctacacagcatctttttctttacggctatagatggcagtacatcacca
tctacatcggcccagactttgggtttgctaaagtcagagctgctggtcag
gggaaagcagtaacgagcaatcagtcccaagctgagcggcaattgatgtc
ttcattaagtgaacaaactggcttccttttataaacaaggtcagggcatt
ttataacccaatggattttattaaattaagcccagccacgcttatgggag
attaacttggtgggaatctagcgatttatcttgcatgaagcacatgcaaa
cggtcctctcaggacggcgctcttcttatgtaatcgcttaatagagtcgt
tctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_87928743_87929247
seq2: B6Ng01-283F08.b_45_549 (reverse)

seq1  TAACCACTCTCACTGCAAAGAAATTACAGGGGTTACCATTCCTAATTCCC  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAACCACTCTCAATGCAAAGAAATTACAGGGGTTACCATTCCTAATTCCC  50

seq1  ACAGCTGGTTCAAAGTCCCTAGACCATGAAAGCCAGCAATGACAAGTCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGGTTCAAAGTCCCTAGACCATGAAAGCCAGCAATGACAAGTCCG  100

seq1  TGATAATTTTTTTTAAAACCCATTTTATCCACATCATTTCAGGCAGAATG  150
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGATAATTTTTATTAAAACCCATTTTATCCACATCATTTCAGGCAGAATG  150

seq1  TCGATCTAATCTCTGTAATCCCCTGGCTTGAGTCTGGGAGGACAGTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATCTAATCTCTGTAATCCCCTGGCTTGAGTCTGGGAGGACAGTGACT  200

seq1  TTTTACCAGGCAGGATTCTACTGAGAAGTTTCTCTTACATGACTCTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCAGGCAGGATTCTACTGAGAAGTTTCTCTTACATGACTCTTTCA  250

seq1  TAGCCAATCTGACTCACAGGAACCCTTACGCTTATTTCACATCCTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAATCTGACTCACAGGAACCCTTACGCTTATTTCACATCCTGTGTG  300

seq1  TGGAATGAGAGCTGTACTGTATTTAACAGGTTGCACCTGGCATGTATGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGAGAGCTGTACTGTATTTAACAGGTTGCACCTGGCATGTATGGC  350

seq1  TATTGTACTTCTTATCTCCAAGCTTTGCAGAAGGGTTTAAACCTCCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTACTTCTTATCTCCAAGCTTTGCAGAAGGGTTTAAACCTCCCCCA  400

seq1  CTCCTCCTACCTTCTACACTGCCAGTATCCAGCCTTGGTGTTGACATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTACCTTCTACACTGCCAGTATCCAGCCTTGGTGTTGACATTTT  450

seq1  GGAGACACTGGAAAAAATCCTGAGCTGAGTTAAATTGACCTGCCTTGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACACTGGAAAAAATCCTGAGCTGAGTTAAATTGACCTGCCTTGCAG  500

seq1  AATTC  505
      |||||
seq2  AATTC  505

seq1: chr16_87745236_87746285
seq2: B6Ng01-283F08.g_64_1117

seq1  GAATTCACACAGGAGGAACCTGGAGTCAGGAGCTGATGCAGAGGCCATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACAGGAGGAACCTGGAGTCAGGAGCTGATGCAGAGGCCATGG  50

seq1  AGGGGTGCTGCTTGTTGGCTTGCTCCTTGTGGTTTGCTTTCTTATATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGCTGCTTGTTGGCTTGCTCCTTGTGGTTTGCTTTCTTATATAAC  100

seq1  CCACAACTCAGGGTGACACACCACCAATCAATCACTAATTAAGAAAATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACTCAGGGTGACACACCACCAATCAATCACTAATTAAGAAAATGC  150

seq1  TCTACAGGTGGCTGTTTATGGAGGCATTGTCTCAATTGATGTTCCCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGGTGGCTGTTTATGGAGGCATTGTCTCAATTGATGTTCCCTCCT  200

seq1  CTTTGATGACTCTTGCTCTTGTCACGTTGACATAAAGCCAGCCAGCACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATGACTCTTGCTCTTGTCACGTTGACATAAAGCCAGCCAGCACAA  250

seq1  TGTTGCTGATGGTGGCATTCTAGGTTAGGAAAGACACAGAAGAAAGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTGATGGTGGCATTCTAGGTTAGGAAAGACACAGAAGAAAGTGGG  300

seq1  GGAAAATTCCTGGCAGGAATTCTGTGAAAACACAAGCAGGATTTGCTCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATTCCTGGCAGGAATTCTGTGAAAACACAAGCAGGATTTGCTCGG  350

seq1  AAAATAGCTCTAGCAGATCTTAGGCCATCAGAGTTTTCATGTTTCCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCTCTAGCAGATCTTAGGCCATCAGAGTTTTCATGTTTCCCTTT  400

seq1  TGGACCTGACCCAGCCATGAGTCACTGGGCTAAGACTTTGCAGTTGTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTGACCCAGCCATGAGTCACTGGGCTAAGACTTTGCAGTTGTGAC  450

seq1  ACTCTATTGCTTGGTTTATCTGTTTCATTTTATTTGGAACCAGTGTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATTGCTTGGTTTATCTGTTTCATTTTATTTGGAACCAGTGTCTTG  500

seq1  CACTGATTTTAACATGGTGAAAGGGCCACAGTTGTGAACCTAGGACTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATTTTAACATGGTGAAAGGGCCACAGTTGTGAACCTAGGACTGTA  550

seq1  TTATTTTTCTGTCTTCGCCATCTCCATCTCCATCACCACCACCACCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCTGTCTTCGCCATCTCCATCTCCATCACCACCACCACCACCA  600

seq1  TCAGCAGCAGCAGCATCAGCATCAGCATCAGTATCAGCAGCAGCAGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCAGCAGCATCAGCATCAGCATCAGTATCAGCAGCAGCAGCAGC  650

seq1  CTGCACTGTATATTCTTGTCCACCCTTGTGCATAGCTGTGGCTCTCAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTGTATATTCTTGTCCACCCTTGTGCATAGCTGTGGCTCTCAGTG  700

seq1  TGCTACACAGCATCTTTTTCTTTACGGCTATAGATGGCAGTACATCACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACACAGCATCTTTTTCTTTACGGCTATAGATGGCAGTACATCACCA  750

seq1  TCTACATCGGCCCAGACTTTGGGTTTGCTAAAGTCAGAGCTGCTGGTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATCGGCCCAGACTTTGGGTTTGCTAAAGTCAGAGCTGCTGGTCAG  800

seq1  GGGAAAGCAGTAACGAGCAATCAGT-CCAAGCTGAGCGGCAAATTGATGT  849
      ||||||||||||||||||||||||| |||||||||||||| |||||||||
seq2  GGGAAAGCAGTAACGAGCAATCAGTCCCAAGCTGAGCGGC-AATTGATGT  849

seq1  CTTCATTAAGTGAACAAACTGGCTTCC-TTTATAAACAAGGTCAGGGCA-  897
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  CTTCATTAAGTGAACAAACTGGCTTCCTTTTATAAACAAGGTCAGGGCAT  899

seq1  TTTATAACCCAATGGA-TTTATTAAATTAAAGCCCAGCCACGCTTAT-GG  945
      |||||||||||||||| ||||||||||| |||||||||||||||||| ||
seq2  TTTATAACCCAATGGATTTTATTAAATT-AAGCCCAGCCACGCTTATGGG  948

seq1  AGATTAACT--GT-GGAATCTAGCGATTTATC-TGCATGAAGCACATGCA  991
      |||||||||  || |||||||||||||||||| |||||||||||||||| 
seq2  AGATTAACTTGGTGGGAATCTAGCGATTTATCTTGCATGAAGCACATGC-  997

seq1  AAACGGTCCTCTTCAGGACCGGCGCTCTTCTTATGTAATCGC-TAATAGA  1040
      ||||||||||| |||||| ||||||||||||||||||||||| |||||| 
seq2  AAACGGTCCTC-TCAGGA-CGGCGCTCTTCTTATGTAATCGCTTAATAG-  1044

seq1  AGTCGTTCTC  1050
      ||||||||||
seq2  AGTCGTTCTC  1054