BAC Information

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BAC

Clone NameB6Ng01-285P13
Chromosome16 (Build37)
Map Location 97,013,613 - 97,182,166
singlet/doubletdoublet
Overlap geneDscam
Upstream geneLOC100040997, Dscr2, Brwd1, LOC100041318, Hmgn1, Wrb, 4921526F01Rik, Sh3bgr, B3galt5, Jam4, Itgb2l, Pcp4
Downstream geneBace2, Mx1, ORF9, EG668559, LOC100041436, Mx2, Tmprss2, Ripk4, Prdm15, 5830404H04Rik, Zfp295, LOC100041502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285P13.bB6Ng01-285P13.g
ACCGA084285GA084286
length9391,105
definitionB6Ng01-285P13.b B6Ng01-285P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,181,591 - 97,182,166)(97,013,613 - 97,014,686)
sequence
gaattcatttttatttttctaatcttctataatcttgaatttttaagata
ggaatgtaagtagattatctacaatccccaaacctaaaatatggaatact
caaaacttcacaactgtaaactggagagagagctcaaatggtaaagcaac
tgtcttgcaagcacaaagaacagagttcagatccctaccactcatgtaaa
tgtgtgatgggcatgtggtttgcaggtgacctccatgctgaagaagatgg
gggattcctaggcaagctgaatagttggactagttggatctgtgagctct
gaattcacagaaaagaacaaatatctaaaaggctgaatgggcctttgtgg
agattttttaaatctgtttaatttattaagtagtattccctgaatgctta
tggcatgccaagaattaacccaagtttgggatgattcattctttttttta
ttatttaatttaattttattttttgcatattcacgttacatcccactcac
tgccccctttcctgtcaccacctcccacaatctttcccccatccccctct
ccttcttctttgagtgtgtggggccccctgggtatccctccctcaccctg
gcacttcaagtctctgtgaggataggtgcttcctctcccactgaggccag
acaaggcagtccagctagaagaacatatctcacagacaggcaacagtttt
ggggatagttcctgctccagttgtttcagacccacatgaaagtcaagctg
cacatctggtacacatgtacgggaaggcctgagtccagcccgtgtatgtt
ctttgggtggtggttcagactctgagagccccaagatttcaggttagttg
actctgttgttcttcctgtggagttcctactcccttcagcctgcagtcct
tcctcctgttcatccataagagtccccgagcttcaatcc
ggcacatgacatggactgaggaggtgcctaggatctcactgaaataagca
gcttagaagcatgttgaaatgatgcaagccacagtgaagatcagttggcc
caagaagtaaccaagaatggggggagggggaatctatccagactagagaa
gcagctggagatggaattcaggctgtgtgtttccgtttctttcatccagc
tttttgtagaacacattaaacatggagaggtaacagggctgaggaagaac
acagcccagatgaacacctcagtctcgggttccgctggtttgtgcatttg
accttctatatacattacagaatgacttgacttcccaatatgtaaattag
ggataattgtggtacccatttcacaagactgtcatggggtgaaatcgagt
tgagattcagaacattagcactttgttggaaaaaagaaaggagtctaaga
gtcaattcatttaataaattcagatgcccagctttgaagtaaacactcct
tttagcaatcagatccggaacatttgtaaactgcccaatgatttcacttc
agataattaatattttgagaataatgcattcaattcagatgtatatatgc
ttggaataaattaataaaagttgagtgccttaaggccaggagatatttct
tggaaaataagaaatttttttcttccctcccttcttcttaccattcctct
gctatctttcattcctccctccttcctctgtctttcctcctctccttctt
tctttttcccttccctttgtaaaaatattactttttaaaaatttatatgt
gtgggcatttttgcttgtatgccatgtgtgcacttgacccaagtatgtca
gaaggaggacatgggatccctgggaatttgggaattacagacgatttgtg
agctgtccctgtgggtgctgggaatttgaagcttgggtctttttggaaga
gcacccagtgtccttagcttgctcagccattcttctcttagccttctgtt
gttagagtttttttgagataattgtcctggctatatgagctccagtttgg
ccccaaaattttcgtaccccctcctaacttctggcttccctaaattgtga
aagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_97181591_97182166
seq2: B6Ng01-285P13.b_45_620 (reverse)

seq1  GGGCCCCACACACTCAAAGAAGAAGGAGAGGGGGATGGGGGAAAGATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCCACACACTCAAAGAAGAAGGAGAGGGGGATGGGGGAAAGATTGT  50

seq1  GGGAGGTGGTGACAGGAAAGGGGGCAGTGAGTGGGATGTAACGTGAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGGTGACAGGAAAGGGGGCAGTGAGTGGGATGTAACGTGAATAT  100

seq1  GCAAAAAATAAAATTAAATTAAATAATAAAAAAAAGAATGAATCATCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAATAAAATTAAATTAAATAATAAAAAAAAGAATGAATCATCCCA  150

seq1  AACTTGGGTTAATTCTTGGCATGCCATAAGCATTCAGGGAATACTACTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGGTTAATTCTTGGCATGCCATAAGCATTCAGGGAATACTACTTA  200

seq1  ATAAATTAAACAGATTTAAAAAATCTCCACAAAGGCCCATTCAGCCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTAAACAGATTTAAAAAATCTCCACAAAGGCCCATTCAGCCTTTT  250

seq1  AGATATTTGTTCTTTTCTGTGAATTCAGAGCTCACAGATCCAACTAGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTGTTCTTTTCTGTGAATTCAGAGCTCACAGATCCAACTAGTCC  300

seq1  AACTATTCAGCTTGCCTAGGAATCCCCCATCTTCTTCAGCATGGAGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTCAGCTTGCCTAGGAATCCCCCATCTTCTTCAGCATGGAGGTCA  350

seq1  CCTGCAAACCACATGCCCATCACACATTTACATGAGTGGTAGGGATCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAACCACATGCCCATCACACATTTACATGAGTGGTAGGGATCTGA  400

seq1  ACTCTGTTCTTTGTGCTTGCAAGACAGTTGCTTTACCATTTGAGCTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTTCTTTGTGCTTGCAAGACAGTTGCTTTACCATTTGAGCTCTCT  450

seq1  CTCCAGTCTACAGTTGTGAAGTTTTGAGTATTCCATATTTTAGGTTTGGG  500
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTTTACAGTTGTGAAGTTTTGAGTATTCCATATTTTAGGTTTGGG  500

seq1  GATTGTAGATAATCTACTTACATTCCTATCTTAAAAATTCAAGATTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTAGATAATCTACTTACATTCCTATCTTAAAAATTCAAGATTATAG  550

seq1  AAGATTAGAAAAATAAAAATGAATTC  576
      ||||||||||||||||||||||||||
seq2  AAGATTAGAAAAATAAAAATGAATTC  576

seq1: chr16_97013613_97014686
seq2: B6Ng01-285P13.g_78_1182

seq1  GGCACATGACATGGACTGAGGAGGTGCCTAGGATCTCACTGAAATAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATGACATGGACTGAGGAGGTGCCTAGGATCTCACTGAAATAAGCA  50

seq1  GCTTAGAAGCATGTTGAAATGATGCAAGCCACAGTGAAGATCAGTTGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGAAGCATGTTGAAATGATGCAAGCCACAGTGAAGATCAGTTGGCC  100

seq1  CAAGAAGTAACCAAGAATGGGGGGAGGGGGAATCTATCCAGACTAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGTAACCAAGAATGGGGGGAGGGGGAATCTATCCAGACTAGAGAA  150

seq1  GCAGCTGGAGATGGAATTCAGGCTGTGTGTTTCCGTTTCTTTCATCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGAGATGGAATTCAGGCTGTGTGTTTCCGTTTCTTTCATCCAGC  200

seq1  TTTTTGTAGAACACATTAAACATGGAGAGGTAACAGGGCTGAGGAAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTAGAACACATTAAACATGGAGAGGTAACAGGGCTGAGGAAGAAC  250

seq1  ACAGCCCAGATGAACACCTCAGTCTCGGGTTCCGCTGGTTTGTGCATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCAGATGAACACCTCAGTCTCGGGTTCCGCTGGTTTGTGCATTTG  300

seq1  ACCTTCTATATACATTACAGAATGACTTGACTTCCCAATATGTAAATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTATATACATTACAGAATGACTTGACTTCCCAATATGTAAATTAG  350

seq1  GGATAATTGTGGTACCCATTTCACAAGACTGTCATGGGGTGAAATCGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATTGTGGTACCCATTTCACAAGACTGTCATGGGGTGAAATCGAGT  400

seq1  TGAGATTCAGAACATTAGCACTTTGTTGGAAAAAAGAAAGGAGTCTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCAGAACATTAGCACTTTGTTGGAAAAAAGAAAGGAGTCTAAGA  450

seq1  GTCAATTCATTTAATAAATTCAGATGCCCAGCTTTGAAGTAAACACTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTCATTTAATAAATTCAGATGCCCAGCTTTGAAGTAAACACTCCT  500

seq1  TTTAGCAATCAGATCCGGAACATTTGTAAACTGCCCAATGATTTCACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCAATCAGATCCGGAACATTTGTAAACTGCCCAATGATTTCACTTC  550

seq1  AGATAATTAATATTTTGAGAATAATGCATTCAATTCAGATGTATATATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTAATATTTTGAGAATAATGCATTCAATTCAGATGTATATATGC  600

seq1  TTGGAATAAATTAATAAAAGTTGAGTGCCTTAAGGCCAGGAGATATTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATAAATTAATAAAAGTTGAGTGCCTTAAGGCCAGGAGATATTTCT  650

seq1  TGGAAAATAAGAAATTTTTTTCTTCCCTCCCTTCTTCTTACCATTCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATAAGAAATTTTTTTCTTCCCTCCCTTCTTCTTACCATTCCTCT  700

seq1  GCTATCTTTCATTCCTCCCTCCTTCCTCTGTCTTTCCTCCTCTCCTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTTTCATTCCTCCCTCCTTCCTCTGTCTTTCCTCCTCTCCTTCTT  750

seq1  TCTTTTTCCCTTCCCTTTGTAAAAATATTACTTTTTAAAAATTTTATATG  800
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTTTTTCCCTTCCCTTTGTAAAAATATTACTTTTTAAAAA-TTTATATG  799

seq1  TGTGGGCA-TTTTGCTTGTATGCCATGTGTGCAC-TGA-CCAAGTAGGTC  847
      |||||||| ||||||||||||||||||||||||| ||| ||||||| |||
seq2  TGTGGGCATTTTTGCTTGTATGCCATGTGTGCACTTGACCCAAGTATGTC  849

seq1  AGAA-GAGGACATGGGATCCCT-GGAATT--GGAATTACAGACGA-TTGT  892
      |||| ||||||||||||||||| ||||||  |||||||||||||| ||||
seq2  AGAAGGAGGACATGGGATCCCTGGGAATTTGGGAATTACAGACGATTTGT  899

seq1  GAGCTGT-CCTGTGGGTGCTGGGAA-TTGAAGC-TGGGTC-TTTTGGAAG  938
      ||||||| ||||||||||||||||| ||||||| |||||| |||||||||
seq2  GAGCTGTCCCTGTGGGTGCTGGGAATTTGAAGCTTGGGTCTTTTTGGAAG  949

seq1  AGCAACCAGTGTCCTTAGC-TGCTCAGCCAT--CTCTC-TAG-CTTCTGT  983
      |||| |||||||||||||| |||||||||||   |||| ||| |||||||
seq2  AGCACCCAGTGTCCTTAGCTTGCTCAGCCATTCTTCTCTTAGCCTTCTGT  999

seq1  TGTTAGAG-TTTTTTGAGATAA-TGT-CTTGCTATAT-AGCTCAAG-TTG  1028
      |||||||| ||||||||||||| ||| || ||||||| ||||| || |||
seq2  TGTTAGAGTTTTTTTGAGATAATTGTCCTGGCTATATGAGCTCCAGTTTG  1049

seq1  GCCCCAAAATTTT----GACCCTCCT-ACTTCTGTCT--CCTAAATTG--  1069
      |||||||||||||      ||||||| ||||||| ||  |||||||||  
seq2  GCCCCAAAATTTTCGTACCCCCTCCTAACTTCTGGCTTCCCTAAATTGTG  1099

seq1  -AAGAA  1074
       |||||
seq2  AAAGAA  1105