BAC Information

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BAC

Clone NameB6Ng01-286M21
Chromosome16 (Build37)5 (Build37)
Map Location 64,999,744 - 65,000,02529,551,830 - 29,552,953
singlet/doubletsingletsinglet
Overlap geneHtr1f
Upstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448
Downstream geneLOC668247, LOC672931, Pou1f1, Chmp2b, EG383186, Vgll3, LOC664846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286M21.bB6Ng01-286M21.g
ACCGA084905GA084906
length9311,111
definitionB6Ng01-286M21.b B6Ng01-286M21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,999,744 - 65,000,025)(29,551,830 - 29,552,953)
sequence
gaattcacaaagcgtgctttttattgattagccaggtaaagattgggaca
gttacttttctcatcactgacaagatgccagtcaggagcaaaggtttact
tttactcccagtccacactgttggcagtgtatgttagtgttttgttactt
gcagatggaccagaaaatagagcaagtgtgcaggctggatccagaggtgg
gtgaaacctagtgaccaatttttgccagccaggctgtgcttcatggaaac
atagcaattttcaagtggtaccatagattgtggctgtgtcctcaaaacat
aaggatgtggcaacatttcagattcaaaccaaaacacttaagatgatagt
cgggagcagcagcggtcgccatcttggtccgggacccgccgaacttagga
aattagtctgaacaggtgagagggtgcgccagagaacctgacagcttctg
gaacaggcggaagcacagaggcgctgaggcagcaccctttgtgggccggg
gacagccggccaccttccgaaccggaggacaggtgcccgcccggctgggg
aggcggcctaagccacagcagcatcggtcgccatcttggtccgagacccg
ccgaacttaggaaattagtctgaacaggtgagagggtgcgccagagaacc
tgacagcttctggaacaggcagaagcacagaggcgctgaggcagcaccct
gtgtgggccggggacagccggccaccttccggaccggaggacaagtgccc
acccggctggggaggcggcctaagccacagcagcagcgatcgccatcttg
gtccgggacccgccgaacttaggaaattagtctgaacaggtgagagggtg
cgccagagaacctgacagcttctggaacaggcggaagcacagaggcgctg
aggcagcaccctgtgtgggccggggacagcc

gaattcatgtccaggaagttaaatgtctgactagaacaagaaaggggtaa
aggctatcctgcttttggatgagctgcatgggtttggggtagaggactac
attgctgactgttctttgtgattatatagaggaaatataagttcctattt
aactgtggtctttattgcattaaaaacagcatgttcgtttgttgaattta
gttacttaaaataaatgagaagtagtgttaattaaaatgtagctagtgtc
tgaccaacagcaagaaactgacacacttattcaatgcataagaatctccc
ttttatttttgtataatagatgtgtgttatagataagtacttttaacatg
ttaactggaaaaaagtgatcttcagcatcaaaactaggtaaatcaaatgc
taatggtggtgttgcagattcctatggtccatataagagaatgaaaatct
catatatggaccaacggaaaatccctgaagtttttggtgccagtgctaca
cactaatgccaggccccacaagtactcaagtccctgtcgcttataaccaa
ctatatctcttcatacactttgaaatcacctctgaactataatgcctagc
atagtgtaagtactctgtgaacagttgctttactattgctgaggaactaa
gaacaggaaaaagaaaactgtgtgtagtaagtacacagacagtagtttgc
tagccctctatactccacattggaaatagagagtgccgatggggccaaga
ctggtgcactcagcagctaatgagaagcattgctcaggtggcccctccat
actggaacagataaaaacacattcaactgcattagcagtatgctaatgga
ggctgggccatctattctacagcactctcaagctccctggctcttctgtc
tcaaagatgtaagtctgctttgcctcagccttcaccagggaatctgcttt
ctttggagggagagcatgttgaggctatgctggagcagtgccaatgggag
cagtatccagcctgatgtgatgcagtagccagcaaggtgttattccaggg
ttcagaacctgctctctaccatggtagagtatttacaattccttttttag
tttctttgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_64999744_65000025
seq2: B6Ng01-286M21.b_612_891 (reverse)

seq1  CTCTCACCTAAGCAGACTAAATTCCTAAGTTCCTTGGAGTCCCGGGACCA  50
      |||||||||   |||||||| |||||||||||   || ||||| ||||||
seq2  CTCTCACCTGTTCAGACTAATTTCCTAAGTTCGGCGG-GTCCC-GGACCA  48

seq1  AGATGGCGACCGCTGCTGCTGTGGCTTAGGCCGCCTCCCCAGCCGGGCGG  100
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  AGATGGCGATCGCTGCTGCTGTGGCTTAGGCCGCCTCCCCAGCCGGGTGG  98

seq1  GCACCTGTCCTCCGGTCCGGAAGGTGGCCGGCTGTCCCCGGCCCACACAG  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGTCCTCCGGTCCGGAAGGTGGCCGGCTGTCCCCGGCCCACACAG  148

seq1  GGTGCTGCCTCAGCCCCTCTGTGCTTCTGCCTGTTCCAGAGGCTGTCAGG  200
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  GGTGCTGCCTCAGCGCCTCTGTGCTTCTGCCTGTTCCAGAAGCTGTCAGG  198

seq1  TTCTCTGGCGCACCCTCTCACCTGTTCAGACTAATTTCCTAAGTTCGGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGCGCACCCTCTCACCTGTTCAGACTAATTTCCTAAGTTCGGCG  248

seq1  GGTCTCGGACCAAGATGGCGACCGCTGCTGCT  282
      |||||||||||||||||||||||| |||||||
seq2  GGTCTCGGACCAAGATGGCGACCGATGCTGCT  280


seq1: chr5_29551830_29552953
seq2: B6Ng01-286M21.g_70_1180

seq1  GAATTCATGTCCAGGAAGTTAAATGTCTGACTAGAACAAGAAAGGGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTCCAGGAAGTTAAATGTCTGACTAGAACAAGAAAGGGGTAA  50

seq1  AGGCTATCCTGCTTTTGGATGAGCTGCATGGGTTTGGGGTAGAGGACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATCCTGCTTTTGGATGAGCTGCATGGGTTTGGGGTAGAGGACTAC  100

seq1  ATTGCTGACTGTTCTTTGTGATTATATAGAGGAAATATAAGTTCCTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGACTGTTCTTTGTGATTATATAGAGGAAATATAAGTTCCTATTT  150

seq1  AACTGTGGTCTTTATTGCATTAAAAACAGCATGTTCGTTTGTTGAATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGGTCTTTATTGCATTAAAAACAGCATGTTCGTTTGTTGAATTTA  200

seq1  GTTACTTAAAATAAATGAGAAGTAGTGTTAATTAAAATGTAGCTAGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTAAAATAAATGAGAAGTAGTGTTAATTAAAATGTAGCTAGTGTC  250

seq1  TGACCAACAGCAAGAAACTGACACACTTATTCAATGCATAAGAATCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAACAGCAAGAAACTGACACACTTATTCAATGCATAAGAATCTCCC  300

seq1  TTTTATTTTTGTATAATAGATGTGTGTTATAGATAAGTACTTTTAACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTGTATAATAGATGTGTGTTATAGATAAGTACTTTTAACATG  350

seq1  TTAACTGGAAAAAAGTGATCTTCAGCATCAAAACTAGGTAAATCAAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGGAAAAAAGTGATCTTCAGCATCAAAACTAGGTAAATCAAATGC  400

seq1  TAATGGTGGTGTTGCAGATTCCTATGGTCCATATAAGAGAATGAAAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTGGTGTTGCAGATTCCTATGGTCCATATAAGAGAATGAAAATCT  450

seq1  CATATATGGACCAACGGAAAATCCCTGAAGTTTTTGGTGCCAGTGCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGGACCAACGGAAAATCCCTGAAGTTTTTGGTGCCAGTGCTACA  500

seq1  CACTAATGCCAGGCCCCACAAGTACTCAAGTCCCTGTCGCTTATAACCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATGCCAGGCCCCACAAGTACTCAAGTCCCTGTCGCTTATAACCAA  550

seq1  CTATATCTCTTCATACACTTTGAAATCACCTCTGAACTATAATGCCTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCTCTTCATACACTTTGAAATCACCTCTGAACTATAATGCCTAGC  600

seq1  ATAGTGTAAGTACTCTGTGAACAGTTGCTTTACTATTGCTGAGGAACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTAAGTACTCTGTGAACAGTTGCTTTACTATTGCTGAGGAACTAA  650

seq1  GAACAGGAAAAAGAAAACTGTGTGTAGTAAGTACACAGACAGTAGTTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGAAAAAGAAAACTGTGTGTAGTAAGTACACAGACAGTAGTTTGC  700

seq1  TAGCCCTCTATACTCCACATTGGAAATAGAGAGTGCCGATGGGGCCAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTCTATACTCCACATTGGAAATAGAGAGTGCCGATGGGGCCAAGA  750

seq1  CTGGTGCACTCAGCAGCTAATGAGAAGCATTGCTCAGGTGGCCCCTCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCACTCAGCAGCTAATGAGAAGCATTGCTCAGGTGGCCCCTCCAT  800

seq1  ACTGGAACAGATAAAAACACATTCAACTGCATTAGCAGTATGCTAATGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAACAGATAAAAACACATTCAACTGCATTAGCAGTATGCTAATGGA  850

seq1  GGCTGGGCCATCTATTCTACAGCACTCTCAAGCTCCCTGGCTCTTTCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGCTGGGCCATCTATTCTACAGCACTCTCAAGCTCCCTGGCTC-TTCTGT  899

seq1  CTCAAAGATGTAAGTCTGCTTTGCCTCAGCCTTCACCAGGGAATCTGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGATGTAAGTCTGCTTTGCCTCAGCCTTCACCAGGGAATCTGCTT  949

seq1  TCTTTGGAGGAAGAGCATGTTGAGGCTATGCTGGGAGGCAGTGCCAATGG  1000
      |||||||||| |||||||||||||||||||||||   |||||||||||||
seq2  TCTTTGGAGGGAGAGCATGTTGAGGCTATGCTGG--AGCAGTGCCAATGG  997

seq1  GAGCCAGTATCCAGCCTGGATGTGAATGCAGGTAGCAAGCAAAGGTG-TA  1049
      ||| ||||||||||||| |||||| ||||| ||||| ||| |||||| ||
seq2  GAG-CAGTATCCAGCCT-GATGTG-ATGCA-GTAGCCAGC-AAGGTGTTA  1042

seq1  TTCCAGGGTTCAGAA-CTGCTCTCTACACAATGTAAGAAGTATTTACAAT  1098
      ||||||||||||||| ||||||||||| ||  |||   ||||||||||||
seq2  TTCCAGGGTTCAGAACCTGCTCTCTAC-CATGGTA--GAGTATTTACAAT  1089

seq1  TCTTTTTTTTTAGTTTTCTTTTGTTG  1124
      ||   |||||||||||   |||||||
seq2  TC--CTTTTTTAGTTT--CTTTGTTG  1111


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