BAC Information

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BAC

Clone NameB6Ng01-287K09
Chromosome16 (Build37)
Map Location 92,050,147 - 92,190,443
singlet/doubletdoublet
Overlap geneMrps6, Slc5a3
Upstream gene4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o
Downstream geneKcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287K09.bB6Ng01-287K09.g
ACCGA085516GA085517
length9061,096
definitionB6Ng01-287K09.b B6Ng01-287K09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,189,539 - 92,190,443)(92,050,147 - 92,051,241)
sequence
gaattcaatctgtgttgtcaggatatcagcagtttagtttacatagctca
atccactctcaaacaccatttatgaattacccacaacagttcaacccaaa
agaaaccttgccaaaacacaaccagaagttctttcgtgcatttctctcta
ggaagtcatgacaaaccaagaccagcaaagtatgacaaggagaaccaata
tcacatagcatcgtccactatctatcaggctatatgtatacccttcccaa
agattatgtgttttctcacacatccactctagcaaaacatcacaagccct
ttttccaggcagcttccaaaaaaaaaaaaaaacactacatgtgtatgttc
tgtgttctcaacaaaacatcctcccatgtgtctgtttctgcaaaaacatc
ctctcataagacagtttccagaaaaacattacatgacacagctgagtctc
aaaaaaaaaaaaaaaagttccacttcagtcctcagagaagcttccccgag
ttcagaggtggacacaatttgtccctaagatgtcaggtgctttccttagc
aggaactggaggggcatcgacaagattgattgataagaagctctgctcaa
ccctcactaacgaaacttctttctctcttggtagagactatcgcagagat
ccacatcttgtcaaaacgcagggaataagagagcacgcttgggtcaaact
gaaggagggaactcaagtgagcagccgccatgatggaagaaactgagatg
aagacgattcagaatctgtccttcgtgaatcaaataatctctaagttcac
ctctgagcagttccagaagctaagaaggcacttggagacagaccgttacc
ctaagggaggaaactctgcaggccttggctgaggaactcaaactgctgaa
agaagt
gaattcatgcatggtggtttggttgtacagtgctgtatcaggagagaaaa
tgagctgggttcaatggatgaaactcatcaatctaacgttgtggaggaga
acaaaaaaacacaacattgggaacaagcagtggcatgctgttgcttagca
acatgtatacaaaagataatgctatgaagaaaagcaagacaagggtcagg
ggagaggtggtgtttctacagaggtgtggaaagggtgattagctaaagct
tcttttaattactcgtgctttgtgcaatttctgcttatatgacgtagttc
atagtaaaaaaaaaaaaaaaaaaaaaaaggagtaggccagatgaagggaa
agatgtatactccagatggaaggcaaagtcagcagggaaggatcgtgcag
agctataggaacgccaacagggcggactgatgaaatggtgtggcaaggag
tggccagaggaatggcgcccacacagtaggaaaggctatatcagtcctgt
ggaggaatcagggctttatcctgagggcagtgggaagtcactgcggtaga
taggctatggagtaacagaatcagacctgcacatttggaaaaagtctttg
tccacatcttgggggctctccctcagtgtcctgggtggtgaagtgtgggg
tcttcagagtgtaaccactgtgggcgacttttccccagagctctgtctgc
atccaggggctgggagcccagagctcgcaactcagtagcgctgcccccaa
agccctttggaccaaagaccttgctcagttcctgatagtgcagtggtttg
tatctgggggacttgcctccttcttaatcacaggcttgttaacgtcaggt
cagagtctcctctctaacgtttgattgaggagaaagtgccatccctgttc
cagacaccattctcatttagattctggatatttttggagcaaatgagaaa
aaataataaaggatgtgaagggttctcgaaccagctgacactgctggaag
tttaacttgttgcgggacccatctcagagctaacacgtgaattaatacgc
acgtgatgttcgattatgctacacgacttgtccaatctgcagtaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_92189539_92190443
seq2: B6Ng01-287K09.b_49_954 (reverse)

seq1  ACTTCTTTCTGCAGTTTGAGTTCCTCAGCCAAGGCCTGCAGAGTTTCCT-  49
      ||||||||| ||||||||||||||||||||||||||||||||||||||| 
seq2  ACTTCTTTCAGCAGTTTGAGTTCCTCAGCCAAGGCCTGCAGAGTTTCCTC  50

seq1  CCTTAGGGTAACGGTCTGTCTCCAAGTGCCTTCTTAGCTTCTGGAACTGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGGTAACGGTCTGTCTCCAAGTGCCTTCTTAGCTTCTGGAACTGC  100

seq1  TCAGAGGTGAACTTAGAGATTATTTGATTCACGAAGGACAGATTCTGAAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGTGAACTTAGAGATTATTTGATTCACGAAGGACAGATTCTGAAT  150

seq1  CGTCTTCATCTCAGTTTCTTCCATCATGGCGGCTGCTCACTTGAGTTCCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTCATCTCAGTTTCTTCCATCATGGCGGCTGCTCACTTGAGTTCCC  200

seq1  TCCTTCAGTTTGACCCAAGCGTGCTCTCTTATTCCCTGCGTTTTGACAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGTTTGACCCAAGCGTGCTCTCTTATTCCCTGCGTTTTGACAAG  250

seq1  ATGTGGATCTCTGCGATAGTCTCTACCAAGAGAGAAAGAAGTTTCGTTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATCTCTGCGATAGTCTCTACCAAGAGAGAAAGAAGTTTCGTTAG  300

seq1  TGAGGGTTGAGCAGAGCTTCTTATCAATCAATCTTGTCGATGCCCCTCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTTGAGCAGAGCTTCTTATCAATCAATCTTGTCGATGCCCCTCCA  350

seq1  GTTCCTGCTAAGGAAAGCACCTGACATCTTAGGGACAAATTGTGTCCACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGCTAAGGAAAGCACCTGACATCTTAGGGACAAATTGTGTCCACC  400

seq1  TCTGAACTCGGGGAAGCTTCTCTGAGGACTGAAGTGGAACTTTTTTTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACTCGGGGAAGCTTCTCTGAGGACTGAAGTGGAACTTTTTTTTTT  450

seq1  TTTTTTGAGACTCAGCTGTGTCATGTAATGTTTTTCTGGAAACTGTCTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGACTCAGCTGTGTCATGTAATGTTTTTCTGGAAACTGTCTTA  500

seq1  TGAGAGGATGTTTTTGCAGAAACAGACACATGGGAGGATGTTTTGTTGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGATGTTTTTGCAGAAACAGACACATGGGAGGATGTTTTGTTGAG  550

seq1  AACACAGAACATACACATGTAGTGTTTTTTTTTTTTTTTGGAAGCTGCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGAACATACACATGTAGTGTTTTTTTTTTTTTTTGGAAGCTGCCT  600

seq1  GGAAAAAGGGCTTGTGATGTTTTGCTAGAGTGGATGTGTGAGAAAACACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGGGCTTGTGATGTTTTGCTAGAGTGGATGTGTGAGAAAACACA  650

seq1  TAATCTTTGGGAAGGGTATACATATAGCCTGATAGATAGTGGACGATGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTTGGGAAGGGTATACATATAGCCTGATAGATAGTGGACGATGCT  700

seq1  ATGTGATATTGGTTCTCCTTGTCATACTTTGCTGGTCTTGGTTTGTCATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATATTGGTTCTCCTTGTCATACTTTGCTGGTCTTGGTTTGTCATG  750

seq1  ACTTCCTAGAGAGAAATGCACGAAAGAACTTCTGGTTGTGTTTTGGCAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTAGAGAGAAATGCACGAAAGAACTTCTGGTTGTGTTTTGGCAAG  800

seq1  GTTTCTTTTGGGTTGAACTGTTGTGGGTAATTCATAAATGGTGTTTGAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTTGGGTTGAACTGTTGTGGGTAATTCATAAATGGTGTTTGAGA  850

seq1  GTGGATTGAGCTATGTAAACTAAACTGCTGATATCCTGACAACACAGATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTGAGCTATGTAAACTAAACTGCTGATATCCTGACAACACAGATT  900

seq1  GAATTC  905
      ||||||
seq2  GAATTC  906

seq1: chr16_92050147_92051241
seq2: B6Ng01-287K09.g_69_1164

seq1  GAATTCATGCATGGTGGTTTGGTTGTACAGTGCTGTATCAGGAGAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCATGGTGGTTTGGTTGTACAGTGCTGTATCAGGAGAGAAAA  50

seq1  TGAGCTGGGTTCAATGGATGAAACTCATCAATCTAACGTTGTGGAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGGGTTCAATGGATGAAACTCATCAATCTAACGTTGTGGAGGAGA  100

seq1  ACAAAAAAACACAACATTGGGAACAAGCAGTGGCATGCTGTTGCTTAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAACACAACATTGGGAACAAGCAGTGGCATGCTGTTGCTTAGCA  150

seq1  ACATGTATACAAAAGATAATGCTATGAAGAAAAGCAAGACAAGGGTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATACAAAAGATAATGCTATGAAGAAAAGCAAGACAAGGGTCAGG  200

seq1  GGAGAGGTGGTGTTTCTACAGAGGTGTGGAAAGGGTGATTAGCTAAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGTGGTGTTTCTACAGAGGTGTGGAAAGGGTGATTAGCTAAAGCT  250

seq1  TCTTTTAATTACTCGTGCTTTGTGCAATTTCTGCTTATATGACGTAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAATTACTCGTGCTTTGTGCAATTTCTGCTTATATGACGTAGTTC  300

seq1  ATAGTAAAAAAAAAAAAAAAAAAAAAAAGGAGTAGGCCAGATGAAGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAAAAAAAAAAAAAAAAAAAAAAGGAGTAGGCCAGATGAAGGGAA  350

seq1  AGATGTATACTCCAGATGGAAGGCAAAGTCAGCAGGGAAGGATCGTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTATACTCCAGATGGAAGGCAAAGTCAGCAGGGAAGGATCGTGCAG  400

seq1  AGCTATAGGAACGCCAACAGGGCGGACTGATGAAATGGTGTGGCAAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAGGAACGCCAACAGGGCGGACTGATGAAATGGTGTGGCAAGGAG  450

seq1  TGGCCAGAGGAATGGCGCCCACACAGTAGGAAAGGCTATATCAGTCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGAGGAATGGCGCCCACACAGTAGGAAAGGCTATATCAGTCCTGT  500

seq1  GGAGGAATCAGGGCTTTATCCTGAGGGCAGTGGGAAGTCACTGCGGTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAATCAGGGCTTTATCCTGAGGGCAGTGGGAAGTCACTGCGGTAGA  550

seq1  TAGGCTATGGAGTAACAGAATCAGACCTGCACATTTGGAAAAAGTCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTATGGAGTAACAGAATCAGACCTGCACATTTGGAAAAAGTCTTTG  600

seq1  TCCACATCTTGGGGGCTCTCCCTCAGTGTCCTGGGTGGTGAAGTGTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCTTGGGGGCTCTCCCTCAGTGTCCTGGGTGGTGAAGTGTGGGG  650

seq1  TCTTCAGAGTGTAACCACTGTGGGCGACTTTTCCCCAGAGCTCTGTCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGAGTGTAACCACTGTGGGCGACTTTTCCCCAGAGCTCTGTCTGC  700

seq1  ATCCAGGGGCTGGGAGCCCAGAGCTCGCAACTCAGTAGCGCTGCCCCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGGGCTGGGAGCCCAGAGCTCGCAACTCAGTAGCGCTGCCCCCAA  750

seq1  AG-CCTTTGGACCAAAGACCTTGCTCAGTTCCTGATAGTGCAGTGG-TTG  798
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGCCCTTTGGACCAAAGACCTTGCTCAGTTCCTGATAGTGCAGTGGTTTG  800

seq1  TATCTGGGGGACTTGCCTCCTT-TTAATCACAGGCTTGTTAACGTCAGGG  847
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  TATCTGGGGGACTTGCCTCCTTCTTAATCACAGGCTTGTTAACGTCA-GG  849

seq1  TCAGAGTCTCCTCTCTAACGTTTGATTGAGGAGAAAGTGCCATCCCTGTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTCTCCTCTCTAACGTTTGATTGAGGAGAAAGTGCCATCCCTGTT  899

seq1  CCCAGACACCA-TCTCATTTAGATTCTGGATA-TTTTGGAGCAAAGGAGA  945
       |||||||||| |||||||||||||||||||| |||||||||||| ||||
seq2  -CCAGACACCATTCTCATTTAGATTCTGGATATTTTTGGAGCAAATGAGA  948

seq1  AAAAATAATAAAGGATGTGA--GGGTCTCGAAACAGCTGACAACTGCTGG  993
      ||||||||||||||||||||  || ||||||| |||||||| ||||||||
seq2  AAAAATAATAAAGGATGTGAAGGGTTCTCGAACCAGCTGAC-ACTGCTGG  997

seq1  AAGTTAACCTTG-TGCGGGACCCATCTCAGAACCTAACAGGTGAA-TAAT  1041
      ||||| | |||| ||||||||||||||||| | |||||| ||||| ||||
seq2  AAGTTTAACTTGTTGCGGGACCCATCTCAG-AGCTAACACGTGAATTAAT  1046

seq1  ACCGCACGTGATGTTCAGATTATTGCTAAAACGACTTGTCCCATCTGCAG  1091
      | |||||||||||||| ||||| |||| | ||||||||||| ||||||||
seq2  A-CGCACGTGATGTTC-GATTA-TGCT-ACACGACTTGTCCAATCTGCAG  1092

seq1  TAAT  1095
      ||||
seq2  TAAT  1096