BAC Information

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BAC

Clone NameB6Ng01-289C03
Chromosome15 (Build37)16 (Build37)
Map Location 42,340,212 - 42,341,40264,999,744 - 65,000,019
singlet/doubletsingletsinglet
Overlap geneAngpt1
Upstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268, LOC100039197
Downstream geneRspo2, LOC675960, Eif3s6, Ttc35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289C03.bB6Ng01-289C03.g
ACCGA086616GA086617
length1,202754
definitionB6Ng01-289C03.b B6Ng01-289C03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,340,212 - 42,341,402)(64,999,744 - 65,000,019)
sequence
gaattcctcttgattgactcgataaaattctttatgcatagatacatcca
gttattcaattcctaaatcctttttgtttatggtgaaatatacaaatata
aactaatttgaaaataatactgctttctagtatccttatacactacatac
ttcaaaacaacaattgtctatttaattttaagcatttatttgtttgtttt
tctacatatttactggggctacagatcaaactcaggtcccatgcttgcta
ggcagcgtatatgccacctggctacatacccagctcttcattataaaata
gaacttgtgagtgttctcacaatgcagcttaccaagctaagtctttaaat
agagaaaagctgtgtgatgcaatccacacactaaagcattggtgctaaca
cgaggatgactcaaaccttctgtcaatctaatgactctaatctactcatt
agacaatcaggtctatcctaaaagtgaagggcacattgcttagtttaata
aaagagtcttcacctagcttattaaggtggaaaagcatctggttagaaac
atacctgaatttaggtgcagagagtttgagtttatattctcaatgtgttt
ctttaaaactactgaagttatgactccggaaacaagatggtcagttctga
gggtctggagtcagcttcactatgctaatatcaaccacagctcccagagc
actgctttactgaagttgacttgctactgggattttcctgacttctcaag
ggctttctttctttttttttttttttttttaacttaagtttattttttaa
agtggtttttaaattttttttcttcatttacatttcaaatgccatcccaa
aagtcccccatatccttcccccgccactcccctacccacccacttccact
ccttgggccctggtgttcccctatactggaggcatataaaagtttgcaag
acccaggggcttctttttcccaatgaatggcagactagggccatcatcct
gctaacatatgcaagattaggacacaagcctctgggggctacagtaggat
caatattggttgttccaccatagggttggcagaactctttaggctctctc
aagggcatcttatttgaaattaaatttaataaacttaaatatcaataaaa
atagctgccaactagtttaacattaaatgcaatacttagttgcgacacgg
ag

gaattcagaccctcctttgacatgggcatccctaaaatttttttcctgca
tttggttgttaaatggcacaaactaaattcacacatttccattagcattt
tttctgtaatgtgttacaataaaaacaacagtaattattggactctcaaa
aataaactcactgttcatcctacatgcatcctgtgtactgtaggatcatg
taaaaatcaatttagtcaaaaagaccagtgaataactagtcagtcatatc
ttaacaatatatcttcagccatctttcccctacccaggatttgtgtatgt
gtgtatgtataggtgtgtatgtacgtttagatgtagaagttgagatcaga
atatctttgtcgagagcggtcgccatcttggtccgagacccgccgaactt
aggaaattagtctgaacaggtgagagggtgcgccagagaacctgacagct
tctggaacaggcagaagcacagaggcgctgaggcagcaccctgtgtgggc
cggggacagccggccaccttccggaccggaggacaggtgcccacccagct
ggggaggcggcctaagccacagcagcagcggtcgccatcttggtccggga
cccgcggaacttaggaaattagtctgaacaggtgagagggtgcgccagag
aacctgacagcttctggaacaggcagaagcacagagggggctgaggcagc
accctgtgtgggccggggacagccggccaccttccggaccggaggacagg
tgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_42340212_42341402
seq2: B6Ng01-289C03.b_44_1245

seq1  GAATTCCTCTTGATTGACTCGATAAAATTCTTTATGCATAGATACATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTGATTGACTCGATAAAATTCTTTATGCATAGATACATCCA  50

seq1  GTTATTCAATTCCTAAATCCTTTTTGTTTATGGTGAAATATACAAATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCAATTCCTAAATCCTTTTTGTTTATGGTGAAATATACAAATATA  100

seq1  AACTAATTTGAAAATAATACTGCTTTCTAGTATCCTTATACACTACATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATTTGAAAATAATACTGCTTTCTAGTATCCTTATACACTACATAC  150

seq1  TTCAAAACAACAATTGTCTATTTAATTTTAAGCATTTATTTGTTTGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACAACAATTGTCTATTTAATTTTAAGCATTTATTTGTTTGTTTT  200

seq1  TCTACATATTTACTGGGGCTACAGATCAAACTCAGGTCCCATGCTTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATATTTACTGGGGCTACAGATCAAACTCAGGTCCCATGCTTGCTA  250

seq1  GGCAGCGTATATGCCACCTGGCTACATACCCAGCTCTTCATTATAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCGTATATGCCACCTGGCTACATACCCAGCTCTTCATTATAAAATA  300

seq1  GAACTTGTGAGTGTTCTCACAATGCAGCTTACCAAGCTAAGTCTTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGTGAGTGTTCTCACAATGCAGCTTACCAAGCTAAGTCTTTAAAT  350

seq1  AGAGAAAAGCTGTGTGATGCAATCCACACACTAAAGCATTGGTGCTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAGCTGTGTGATGCAATCCACACACTAAAGCATTGGTGCTAACA  400

seq1  CGAGGATGACTCAAACCTTCTGTCAATCTAATGACTCTAATCTACTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGATGACTCAAACCTTCTGTCAATCTAATGACTCTAATCTACTCATT  450

seq1  AGACAATCAGGTCTATCCTAAAAGTGAAGGGCACATTGCTTAGTTTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATCAGGTCTATCCTAAAAGTGAAGGGCACATTGCTTAGTTTAATA  500

seq1  AAAGAGTCTTCACCTAGCTTATTAAGGTGGAAAAGCATCTGGTTAGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTCTTCACCTAGCTTATTAAGGTGGAAAAGCATCTGGTTAGAAAC  550

seq1  ATACCTGAATTTAGGTGCAGAGAGTTTGAGTTTATATTCTCAATGTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGAATTTAGGTGCAGAGAGTTTGAGTTTATATTCTCAATGTGTTT  600

seq1  CTTTAAAACTACTGAAGTTATGACTCCGGAAACAAGATGGTCAGTTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAACTACTGAAGTTATGACTCCGGAAACAAGATGGTCAGTTCTGA  650

seq1  GGGTCTGGAGTCAGCTTCACTATGCTAATATCAACCACAGCTCCCAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGGAGTCAGCTTCACTATGCTAATATCAACCACAGCTCCCAGAGC  700

seq1  ACTGCTTTACTGAAGTTGACTTGCTACTGGGATTTTCCTGACTTCTCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTTACTGAAGTTGACTTGCTACTGGGATTTTCCTGACTTCTCAAG  750

seq1  GGCTTTCTTTCTTTTTTTTTTTTTTTTTTTAACTTAAGTTTATTTTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCTTTCTTTTTTTTTTTTTTTTTTTAACTTAAGTTTATTTTTTAA  800

seq1  AGTGGTTTTTAAA-TTTTTTTCTTCATTTACATTTCAAATGCCATCCCAA  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTTTTAAATTTTTTTTCTTCATTTACATTTCAAATGCCATCCCAA  850

seq1  AAGTCCCCCATATCC-TCCCCCGCCACTCCCCTACCCACCCACTCCCACT  898
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  AAGTCCCCCATATCCTTCCCCCGCCACTCCCCTACCCACCCACTTCCACT  900

seq1  CCTT-GGCCCTGGTGTTCCCCTATACT-GAGGCATAT-AAAGTTTGCAAG  945
      |||| |||||||||||||||||||||| ||||||||| ||||||||||||
seq2  CCTTGGGCCCTGGTGTTCCCCTATACTGGAGGCATATAAAAGTTTGCAAG  950

seq1  ACCCAGGGGCCTCTTTTT-CCAATG-ATGGCAGACTA-GGCCATCAT-CT  991
      |||||||||| ||||||| |||||| ||||||||||| ||||||||| ||
seq2  ACCCAGGGGCTTCTTTTTCCCAATGAATGGCAGACTAGGGCCATCATCCT  1000

seq1  GCT-ACATATGC-AGATAAAGACACAAG-CTCT-GGGGCTACCAGTTAGT  1037
      ||| |||||||| |||| | |||||||| |||| ||||||| ||||  | 
seq2  GCTAACATATGCAAGATTAGGACACAAGCCTCTGGGGGCTA-CAGTAGGA  1049

seq1  TC-ATATT-GTTGTTCCACCCATAGGGTT-GCAGACCCCTTTA-GCTCTC  1083
      || ||||| ||||||||| |||||||||| ||||| | ||||| ||||||
seq2  TCAATATTGGTTGTTCCA-CCATAGGGTTGGCAGAACTCTTTAGGCTCTC  1098

seq1  TCAAGGGCATTCTTATTT-AAATTAAATTTTAATAAATTTTAAATATCAA  1132
      ||||||||| |||||||| |||||||| |||||||||  |||||||||||
seq2  TCAAGGGCA-TCTTATTTGAAATTAAA-TTTAATAAA-CTTAAATATCAA  1145

seq1  TAAAAATAGCTGCACAACCAAGTTTAACATATAAAATGC-ATACTTAGTT  1181
      ||||||||||||| ||| | ||||||||  || |||||| ||||||||||
seq2  TAAAAATAGCTGC-CAA-CTAGTTTAAC--ATTAAATGCAATACTTAGTT  1191

seq1  G-GACAGGGAG  1191
      | |||| ||||
seq2  GCGACACGGAG  1202


seq1: chr16_64999744_65000019
seq2: B6Ng01-289C03.g_433_706 (reverse)

seq1  CTCTCACCTAAGCAGACTAAATTCCTAAGTTCCTTGGAGTCCCGGGACCA  50
      |||||||||   |||||||| ||||||||||||  || ||||| ||||||
seq2  CTCTCACCTGTTCAGACTAATTTCCTAAGTTCCGCGG-GTCCC-GGACCA  48

seq1  AGATGGCGACCGCTGCTGCTGTGGCTTAGGCCGCCTCCCCAGCCGGGCGG  100
      ||||||||||||||||||||||||||||||||||||||||||| ||| ||
seq2  AGATGGCGACCGCTGCTGCTGTGGCTTAGGCCGCCTCCCCAGCTGGGTGG  98

seq1  GCACCTGTCCTCCGGTCCGGAAGGTGGCCGGCTGTCCCCGGCCCACACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGTCCTCCGGTCCGGAAGGTGGCCGGCTGTCCCCGGCCCACACAG  148

seq1  GGTGCTGCCTCAGCCCCTCTGTGCTTCTGCCTGTTCCAGAGGCTGTCAGG  200
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  GGTGCTGCCTCAGCGCCTCTGTGCTTCTGCCTGTTCCAGAAGCTGTCAGG  198

seq1  TTCTCTGGCGCACCCTCTCACCTGTTCAGACTAATTTCCTAAGTTCGGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGCGCACCCTCTCACCTGTTCAGACTAATTTCCTAAGTTCGGCG  248

seq1  GGTCTCGGACCAAGATGGCGACCGCT  276
      ||||||||||||||||||||||||||
seq2  GGTCTCGGACCAAGATGGCGACCGCT  274


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