BAC Information

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BAC

Clone NameB6Ng01-290B05
Chromosome16 (Build37)
Map Location 26,096,759 - 26,097,901
singlet/doubletsinglet
Overlap geneLeprel1
Upstream gene5430420C16Rik, Trp63, LOC100043571
Downstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290B05.bB6Ng01-290B05.g
ACCGA087306GA087307
length1,2051,131
definitionB6Ng01-290B05.b B6Ng01-290B05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatctgaccacctggaataatgtcagatagcaacaacaacaaaa
acaagtcaaggcacagaaactcactgacattaaacaacacattatttaat
aacatgtggaccatttatatagaacgtccttcctgaaaggatcagggaat
gccaaggaataggtgacagaaaaaatgtaagcggcagaagccatgaagga
ctgggataaagcggtgtcttaatgttcatgataaccttgctgtccttatg
aagtcagcactagtggctggaagtggaaatttctggtttctttgaaaatt
cagttgtgtcatatgatgttttcctggaagctgtctggtgagagggtgtt
ttgctgaagcagacactggagagggcacttgatgtttagaaagaataaaa
gtcgaaccccacagacaaagaagggacagtcatcactaactgtgcaacac
ttgctggtctctgctggtctttgctggtcttcacaccatagagagaaatt
tgccaaagaacttctctcggtattccagctgactcttgccacttccactg
atttgtgctgattcagcagagtcttgtggcttctgctgggttgagccgct
gctactgatttgggtttggtgtttgctattggactggactgttggtatca
tggcagtgacaagtgtaatcaccccaaagaacttcttccaaactggtcca
gaaactccttgtcctactaactatctttctcccctacctttggtcagtgg
actagaaggcaggttgaagtgtctaagaaccctaaataaagtaggtattg
aaaaatctaagcctacagtggctgcttgcactagacctgcacaaagaaca
ttctaccatgaactggggaggggcacttgtgcccacatctctagttgagg
aattataaaggagttgatgactgctaggagatggagagtaacttttctct
agagcagtggctctcaacctttacaaaactatgggacttttaatacagtt
cttcatgttgtagagacccccagtcataaaattattttcactgatactca
taactataatttttctacctctatgaatataatctgtgtctcaattcatc
tggatgatcctaaaaaaatgttattcaaattgccaatgggcttgcctagg
cacttagaagtcttgctttccagagttgtgtgggcccactttatatatag
aaaat
gaattcatcatctgaaaataattgatttgggttttgtaaaagtgccagga
ctctagtggagattgcagcatgaccgtgccaagactcagacaagggccag
ataaaggtaaaagatacaattaacaaatgagtaagaaacagggaaacatg
tggaagttaactgacccaatctttctattcttgctcgaatcaatattaag
aattactcttcttgctggatgctaaatattttgctttacctcttccaaaa
tcaatagtcttgcatgttaaaatcagcacacaattaagaatcaggcacag
agaattcctctaccaccagatttgcatgtaaaatttaccttaaattaggc
tatcacaagattaatccagtagaccatacaaattatttcccaattgaagc
aagacaaagttcttaatatttcaagagtgaattttgtattattagattct
aatagatgccatttacaaatagtatcagggacaaagactttcccagtcat
tcatgagttctagaggattacccagaggattaattaaatggtggggctga
ggacaaacttcaggtcaataggtttataacagtctctcaacattggctta
aatgtgtagagaagggcaattcttcatagtgggtggtgttctttttctcc
ttaggctggtgaacatcctttctgacccttaactactcagaagttgtcag
tcacacatgccccgccccttttccagatactatgacaggcatagaatgtt
cctatacatgggaaagtattcttgagacgcttcacttgcctcagagtgag
cactgctggagtgagcagttagccatatttggaatgcctgcacatactgg
ttagaagatcccaagtcaagttctgacaatggacacttgatgctgtcatg
ccaccgatgaatatttatgaaaaagtttggctgtaccttgtcatcccact
gaaagggaaatccaccgggaccaggctttctccattaggggagagaactg
ggctttctgccatgggatgatctgcctttctgtcctagtcagattggagg
ttagacagacttgcctttctctggctttcattcgatatgatcacatgttt
agtgatgcaatggatatctctaagtggtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_26096759_26097901
seq2: B6Ng01-290B05.g_66_1196 (reverse)

seq1  TTCACAACTTAGAGATATTCATTTGCATCACTAAAACATGTTGAATCATA  50
      ||||| |||||||||||| || |||||||||| ||||||||   ||||||
seq2  TTCACCACTTAGAGATATCCA-TTGCATCACT-AAACATGT--GATCATA  46

seq1  TTCGAATGAAAAGCAGAGAAAAGGCAAAGTTCTGTCCTACCCTCCAATCT  100
       ||||||||||  ||||| ||||||||   ||||| ||| ||||||||||
seq2  -TCGAATGAAAGCCAGAG-AAAGGCAA--GTCTGT-CTAACCTCCAATCT  91

seq1  GAACTAGGACAGAAAGGCAGGATCAT-CCATGGCAAGAAAGCCCAGTTCT  149
      | ||||||||||||||||| |||||| ||||||| |||||||||||||||
seq2  G-ACTAGGACAGAAAGGCA-GATCATCCCATGGC-AGAAAGCCCAGTTCT  138

seq1  CTTCCCCTAATGGAGAAAGCCTGGTCCCGGTGGATTTCCCTTTCAGTGGG  199
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TCCCCTAATGGAGAAAGCCTGGTCCCGGTGGATTTCCCTTTCAGTGGG  187

seq1  ATGACAAGGTACAGCCAAACTTTTTCATAAATATTCATCGGTGGCATGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAGGTACAGCCAAACTTTTTCATAAATATTCATCGGTGGCATGAC  237

seq1  AGCATCAAGTGTCCATTGTCAGAACTTGACTTGGGATCTTCTAACCAGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAAGTGTCCATTGTCAGAACTTGACTTGGGATCTTCTAACCAGTA  287

seq1  TGTGCAGGCATTCCAAATATGGCTAACTGCTCACTCCAGCAGTGCTCACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGGCATTCCAAATATGGCTAACTGCTCACTCCAGCAGTGCTCACT  337

seq1  CTGAGGCAAGTGAAGCGTCTCAAGAATACTTTCCCATGTATAGGAACATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCAAGTGAAGCGTCTCAAGAATACTTTCCCATGTATAGGAACATT  387

seq1  CTATGCCTGTCATAGTATCTGGAAAAGGGGCGGGGCATGTGTGACTGACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCTGTCATAGTATCTGGAAAAGGGGCGGGGCATGTGTGACTGACA  437

seq1  ACTTCTGAGTAGTTAAGGGTCAGAAAGGATGTTCACCAGCCTAAGGAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGAGTAGTTAAGGGTCAGAAAGGATGTTCACCAGCCTAAGGAGAA  487

seq1  AAAGAACACCACCCACTATGAAGAATTGCCCTTCTCTACACATTTAAGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACACCACCCACTATGAAGAATTGCCCTTCTCTACACATTTAAGCC  537

seq1  AATGTTGAGAGACTGTTATAAACCTATTGACCTGAAGTTTGTCCTCAGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGAGAGACTGTTATAAACCTATTGACCTGAAGTTTGTCCTCAGCC  587

seq1  CCACCATTTAATTAATCCTCTGGGTAATCCTCTAGAACTCATGAATGACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATTTAATTAATCCTCTGGGTAATCCTCTAGAACTCATGAATGACT  637

seq1  GGGAAAGTCTTTGTCCCTGATACTATTTGTAAATGGCATCTATTAGAATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGTCTTTGTCCCTGATACTATTTGTAAATGGCATCTATTAGAATC  687

seq1  TAATAATACAAAATTCACTCTTGAAATATTAAGAACTTTGTCTTGCTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATACAAAATTCACTCTTGAAATATTAAGAACTTTGTCTTGCTTCA  737

seq1  ATTGGGAAATAATTTGTATGGTCTACTGGATTAATCTTGTGATAGCCTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAAATAATTTGTATGGTCTACTGGATTAATCTTGTGATAGCCTAA  787

seq1  TTTAAGGTAAATTTTACATGCAAATCTGGTGGTAGAGGAATTCTCTGTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGTAAATTTTACATGCAAATCTGGTGGTAGAGGAATTCTCTGTGC  837

seq1  CTGATTCTTAATTGTGTGCTGATTTTAACATGCAAGACTATTGATTTTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCTTAATTGTGTGCTGATTTTAACATGCAAGACTATTGATTTTGG  887

seq1  AAGAGGTAAAGCAAAATATTTAGCATCCAGCAAGAAGAGTAATTCTTAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTAAAGCAAAATATTTAGCATCCAGCAAGAAGAGTAATTCTTAAT  937

seq1  ATTGATTCGAGCAAGAATAGAAAGATTGGGTCAGTTAACTTCCACATGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTCGAGCAAGAATAGAAAGATTGGGTCAGTTAACTTCCACATGTT  987

seq1  TCCCTGTTTCTTACTCATTTGTTAATTGTATCTTTTACCTTTATCTGGCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTTTCTTACTCATTTGTTAATTGTATCTTTTACCTTTATCTGGCC  1037

seq1  CTTGTCTGAGTCTTGGCACGGTCATGCTGCAATCTCCACTAGAGTCCTGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTGAGTCTTGGCACGGTCATGCTGCAATCTCCACTAGAGTCCTGG  1087

seq1  CACTTTTACAAAACCCAAATCAATTATTTTCAGATGATGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTACAAAACCCAAATCAATTATTTTCAGATGATGAATTC  1131