BAC Information

Click to search

BAC

Clone NameB6Ng01-290D10
Chromosome16 (Build37)
Map Location 83,313,873 - 83,446,437
singlet/doubletdoublet
Overlap geneEG545172
Upstream geneEG665260
Downstream geneLOC100039572, EG621729, LOC640489, LOC665664
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290D10.bB6Ng01-290D10.g
ACCGA087408GA087409
length549346
definitionB6Ng01-290D10.b B6Ng01-290D10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,313,873 - 83,314,421)(83,446,092 - 83,446,437)
sequence
gaattcaccctaatcaagaaagcatctgtccaatagatgtagactgttta
aaacaaaaacaaaaacaaaagcaaacaaacaaaaacagctacatccaatc
aatttacagagttgttgagaggcaagtcccagtgaatacagaagcaactc
cttcctactgctaaagctcagaggcagctattctaaataataataataat
aataataataataataataataataataatagccatggagaagaaaggaa
gttctccatgagaactgtcccctaatgtcacaaactacaacccaatatat
cagcaaaacacctacccaaacacaaaccgaccaaagtgtccaccaacgga
cactccaagcaacactggaaggagttcgctagatacgatctccccacaaa
gaactacaagcaatccagtaaagccgggactgggagacattgtctgcctc
agggaaaaacacattcactcattgtccaatgctaaatcaacccagaaaac
atgcaacacaaatgtaacaccataggggttgagtaggttctatttaggt

aacacaatattttgaaaccagacctttatttttggtctctacatttattt
gtgtttacataaattggctgaaaatacagttcatgataatgttattataa
attctaatggataaaatttagaaatgagagtcataaaaggtttaaagctt
attgtttttaatctaaaatctttggcaaacatcacaaaattgagataagt
aagctttcagttttttataaaaaagatggcctagtcggccatcactggaa
agagaggcccattggacttgcaaactttatatgccccagtacaggggaac
accagggccaaaaagggggagtgggtgggcaggggagtgggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_83313873_83314421
seq2: B6Ng01-290D10.b_47_595

seq1  GAATTCACCCTAATCAAGAAAGCATCTGTCCAATAGATGTAGACTGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTAATCAAGAAAGCATCTGTCCAATAGATGTAGACTGTTTA  50

seq1  AAACAAAAACAAAAACAAAAGCAAACAAACAAAAACAGCTACATCCAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAACAAAAACAAAAGCAAACAAACAAAAACAGCTACATCCAATC  100

seq1  AATTTACAGAGTTGTTGAGAGGCAAGTCCCAGTGAATACAGAAGCAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACAGAGTTGTTGAGAGGCAAGTCCCAGTGAATACAGAAGCAACTC  150

seq1  CTTCCTACTGCTAAAGCTCAGAGGCAGCTATTCTAAATAATAATAATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTACTGCTAAAGCTCAGAGGCAGCTATTCTAAATAATAATAATAAT  200

seq1  AATAATAATAATAATAATAATAATAATAATAGCCATGGAGAAGAAAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATAATAATAATAATAATAATAATAGCCATGGAGAAGAAAGGAA  250

seq1  GTTCTCCATGAGAACTGTCCCCTAATGTCACAAACTACAACCCAATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCATGAGAACTGTCCCCTAATGTCACAAACTACAACCCAATATAT  300

seq1  CAGCAAAACACCTACCCAAACACAAACCGACCAAAGTGTCCACCAACGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAACACCTACCCAAACACAAACCGACCAAAGTGTCCACCAACGGA  350

seq1  CACTCCAAGCAACACTGGAAGGAGTTCGCTAGATACGATCTCCCCACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAAGCAACACTGGAAGGAGTTCGCTAGATACGATCTCCCCACAAA  400

seq1  GAACTACAAGCAATCCAGTAAAGCCGGGACTGGGAGACATTGTCTGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACAAGCAATCCAGTAAAGCCGGGACTGGGAGACATTGTCTGCCTC  450

seq1  AGGGAAAAACACATTCACTCATTGTCCAATGCTAAATCAACCCAGAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAACACATTCACTCATTGTCCAATGCTAAATCAACCCAGAAAAC  500

seq1  ATGCAACACAAATGTAACACCATAGGGGTTGAGTAGGTTCTATTTAGGT  549
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACACAAATGTAACACCATAGGGGTTGAGTAGGTTCTATTTAGGT  549


seq1: chr16_83446092_83446437
seq2: B6Ng01-290D10.g_72_417 (reverse)

seq1  CCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTGTTC  50

seq1  CCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCC  100

seq1  AGTGATGGCCGACTAGGCCATCTTTTTTATAAAAAACTGAAAGCTTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGGCCGACTAGGCCATCTTTTTTATAAAAAACTGAAAGCTTACTT  150

seq1  ATCTCAATTTTGTGATGTTTGCCAAAGATTTTAGATTAAAAACAATAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAATTTTGTGATGTTTGCCAAAGATTTTAGATTAAAAACAATAAGC  200

seq1  TTTAAACCTTTTATGACTCTCATTTCTAAATTTTATCCATTAGAATTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACCTTTTATGACTCTCATTTCTAAATTTTATCCATTAGAATTTAT  250

seq1  AATAACATTATCATGAACTGTATTTTCAGCCAATTTATGTAAACACAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATTATCATGAACTGTATTTTCAGCCAATTTATGTAAACACAAAT  300

seq1  AAATGTAGAGACCAAAAATAAAGGTCTGGTTTCAAAATATTGTGTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGAGACCAAAAATAAAGGTCTGGTTTCAAAATATTGTGTT  346


| Home | SequenceCutter | Blast | Download |