BAC Information

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BAC

Clone NameB6Ng01-290E20
Chromosome16 (Build37)
Map Location 19,042,000 - 19,043,152
singlet/doubletsinglet
Overlap geneIgl
Upstream geneDgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira
Downstream geneIgl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290E20.bB6Ng01-290E20.g
ACCGA087476GA087477
length1,1761,153
definitionB6Ng01-290E20.b B6Ng01-290E20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccccctcacaccagtcagaatggctaagatcaaaatttcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaatctggaaagaacacagat
gcccctcaacagaggaatggatacagaaaatgtgatacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccgaaaacc
taggatacccaagatataagatacaatttcctaaagacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatacccagggatccaccccataatc
agcatccaaatgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acaaactggatgctcacagtcagctaatggatgaatcacagggcccccca
atgggaggagctagagaaagtacccaagagctaaagggatctgcaaccct
ataggtggaacacattatgactaaccagtatcccggagctctgactctag
ctgcacatgtataaaagatgacttagtcgcatcactggaaagagagtcca
atgaacacgcaaactttatatgccccagtcagaacgcaggccaaaagcga
actgattggcttaggggtaagtgtgc
gaattctagaccaagtttctggtccctgagagccattccctagggatcag
gaggacaaagcttcaaggtctacacatcccctctttctggaattgtggag
tctagtactctacatctcgcagagaatcagttgacattcacaaccactga
gggccagggctctcaacctgaggggtctttcctgcttgcagccacctgga
taacaatagtgctaaaatcagggtgtcctaaaccccagttttatctcctg
gaatcgaggtccctacaggagttgtccacagctacaaaaagcttttacag
gcccagtgcactcaaagttgattcataggcacttggtgcccttatcagtg
agaacacagctgcactattttgtccaagagtctggctggaaagaggcctt
gtactcaataatgcattccctaaataaagacattcattagggggtagaga
cagtagagccccctcctgggtcaggacaggatgccacatctgttccagcc
tgaggcacgggctgcctttctgagcctgtggcttccccagcccatggggc
cattttgggagagaacagctcgccagtgttgacaggcctgttcctctgct
tagcagactgaatattctatgggcttgaataatgcaggtttctcattcat
ccaaaccagccgaggctgcggaagaatcacagagaaagggtggccagatc
gatggcttcacccactttgagagaggatccgagtccattccaactaagcc
agggagatggctggtggtaggagtggtactccatctaaccttggtgacat
tgatccatcagttagagagacggtgtactttttagttttcatcaacttga
cacaaggtagggccagatggggggaggcaagctcagctgagaaaaggcct
ccatcagattggcatgtaggcaagtctgcagaaaaggcctccatcggatt
ggcgtgtaggcaatctgatgtcacaaagccttcagtccaggcctgagagc
aaaaggcactttctggttttgttttctgtgcgattctctgaactgatttc
ttatccccacaatgagcacaaatgccaatggatctgtgcttcttgtgctg
gtgctgtcagcttctgaacttcagcagtttcagaaacttgggaagtggtt
gag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_19042000_19043152
seq2: B6Ng01-290E20.g_64_1216

seq1  GAATTCTAGACCAAGTTTCTGGTCCCTGAGAGCCATTCCCTAGGGATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGACCAAGTTTCTGGTCCCTGAGAGCCATTCCCTAGGGATCAG  50

seq1  GAGGACAAAGCTTCAAGGTCTACACATCCCCTCTTTCTGGAATTGTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAAAGCTTCAAGGTCTACACATCCCCTCTTTCTGGAATTGTGGAG  100

seq1  TCTAGTACTCTACATCTCGCAGAGAATCAGTTGACATTCACAACCACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTACTCTACATCTCGCAGAGAATCAGTTGACATTCACAACCACTGA  150

seq1  GGGCCAGGGCTCTCAACCTGAGGGGTCTTTCCTGCTTGCAGCCACCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGGGCTCTCAACCTGAGGGGTCTTTCCTGCTTGCAGCCACCTGGA  200

seq1  TAACAATAGTGCTAAAATCAGGGTGTCCTAAACCCCAGTTTTATCTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATAGTGCTAAAATCAGGGTGTCCTAAACCCCAGTTTTATCTCCTG  250

seq1  GAATCGAGGTCCCTACAGGAGTTGTCCACAGCTACAAAAAGCTTTTACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGAGGTCCCTACAGGAGTTGTCCACAGCTACAAAAAGCTTTTACAG  300

seq1  GCCCAGTGCACTCAAAGTTGATTCATAGGCACTTGGTGCCCTTATCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGCACTCAAAGTTGATTCATAGGCACTTGGTGCCCTTATCAGTG  350

seq1  AGAACACAGCTGCACTATTTTGTCCAAGAGTCTGGCTGGAAAGAGGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAGCTGCACTATTTTGTCCAAGAGTCTGGCTGGAAAGAGGCCTT  400

seq1  GTACTCAATAATGCATTCCCTAAATAAAGACATTCATTAGGGGGTAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCAATAATGCATTCCCTAAATAAAGACATTCATTAGGGGGTAGAGA  450

seq1  CAGTAGAGCCCCCTCCTGGGTCAGGACAGGATGCCACATCTGTTCCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAGCCCCCTCCTGGGTCAGGACAGGATGCCACATCTGTTCCAGCC  500

seq1  TGAGGCACGGGCTGCCTTTCTGAGCCTGTGGCTTCCCCAGCCCATGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCACGGGCTGCCTTTCTGAGCCTGTGGCTTCCCCAGCCCATGGGGC  550

seq1  CATTTTGGGAGAGAACAGCTCGCCAGTGTTGACAGGCCTGTTCCTCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGGGAGAGAACAGCTCGCCAGTGTTGACAGGCCTGTTCCTCTGCT  600

seq1  TAGCAGACTGAATATTCTATGGGCTTGAATAATGCAGGTTTCTCATTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGACTGAATATTCTATGGGCTTGAATAATGCAGGTTTCTCATTCAT  650

seq1  CCAAACCAGCCGAGGCTGCGGAAGAATCACAGAGAAAGGGTGGCCAGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCAGCCGAGGCTGCGGAAGAATCACAGAGAAAGGGTGGCCAGATC  700

seq1  GATGGCTTCACCCACTTTGAGAGAGGATCCGAGTCCATTCCAACTAAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTCACCCACTTTGAGAGAGGATCCGAGTCCATTCCAACTAAGCC  750

seq1  AGGGAGATGGCTGGTGGTAGGAGTGGTACTCCATCTAACCTTGGTGACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATGGCTGGTGGTAGGAGTGGTACTCCATCTAACCTTGGTGACAT  800

seq1  TGATCCATCAGGTTAGAGAGACGGTGTACTTTTTAGTTTTCATCAACTTG  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGATCCATCA-GTTAGAGAGACGGTGTACTTTTTAGTTTTCATCAACTTG  849

seq1  ACACAAGGTAGGGCCAGAT-GGGGGAGGCAAGCTCAGCTGAGAAAAGGCC  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACACAAGGTAGGGCCAGATGGGGGGAGGCAAGCTCAGCTGAGAAAAGGCC  899

seq1  TCCATCAGATTGGCATGTAGGCAAGTCTGCAGAAAAGGCCTCCATCGGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAGATTGGCATGTAGGCAAGTCTGCAGAAAAGGCCTCCATCGGAT  949

seq1  TGGCGTGTAGGCAATCTGATGTCACAAAGCCTTCAGTCCCAGGCCTGAGG  999
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  TGGCGTGTAGGCAATCTGATGTCACAAAGCCTTCAGT-CCAGGCCTGA-G  997

seq1  AGCAAAAGGCACTTTCTGGTTTTGTTTTCTGTGCGATTCTCCTGACTGAT  1049
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  AGCAAAAGGCACTTTCTGGTTTTGTTTTCTGTGCGATTCTCTGAACTGAT  1047

seq1  TTCTTATCCCCACCATGAGGCACCAATGCCAATGGGAATCTGTGC-TCCT  1098
      ||||||||||||| |||| |||| |||||||||||  |||||||| || |
seq2  TTCTTATCCCCACAATGA-GCACAAATGCCAATGG--ATCTGTGCTTCTT  1094

seq1  GTGCT-GTGCTGTCCAGCCTCTG-ACCTCAGCAGTGTCAG--ACTTGGGA  1144
      ||||| ||||||| |||| |||| || |||||||| ||||  ||||||||
seq2  GTGCTGGTGCTGT-CAGCTTCTGAACTTCAGCAGTTTCAGAAACTTGGGA  1143

seq1  TG-GGTTGAG  1153
       | |||||||
seq2  AGTGGTTGAG  1153