BAC Information

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BAC

Clone NameB6Ng01-290J04
Chromosome16 (Build37)
Map Location 62,217,034 - 62,324,511
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043524, LOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290J04.bB6Ng01-290J04.g
ACCGA087684GA087685
length1,0051,007
definitionB6Ng01-290J04.b B6Ng01-290J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,323,507 - 62,324,511)(62,217,034 - 62,218,030)
sequence
gaattcacagtactagaatatttaccaagtctttatttgtagaaacggga
ggatggacaacgaacaaagaacagaatgcaaaggaaacaaaatgcctgag
agtttttatgaggttttagaaaatgtttcaaacactataagcctaagctg
tttctagaggtcttccaggtacatctctgaaaggatagagatcataataa
aaaaattaaggatgtatcagaaagcttttatacagctttgatatgtggtc
atgtatctatgaaacatgctcaaatttcaagtgcctctttgattgttagt
ataagaaaacttcaatgctgggtaaacacattttagattttaagtgtctt
aatggcatattgtaagcataggttgctgagggcccataatttcagaagtc
attaaactaacctccctcttcatcgtctggactaaagcattacaactggt
gtatgatttgtgtgatatttaataattttctcttcccttatcatctgtcc
ctctaatcaaataaagaagccctactattatctatcatatttgtggtagt
tcttataaatctgattttgaatctctcacattccagttatctatggctac
acacaaacttcccaaatctattggtttaacacagagcaataacctctttg
aaaatggaatctgtagtcatttgtggcttgaagagttctttcatctctgc
ttttactactgtgcttttagagttaagaatttactttaaagcagctctct
ttgatactgattgttagtagtaagcttcatcaagtttggaaacatagaaa
attgaaatctcgctctgagaatgtttgtgattcctcacattgtgatagct
atgcaagccctaccccaccaaatgcaagctagaagagggaaaatccttac
aacttctgttggtcacatattcatagagtgtgtacatttttgagcagagg
ggtcatagaccacagaagtaaatgcacatatatatatgtgtgtgtgtgtg
tgtgt

gaattctgcactgaacccatctggtcctggcctttttttggttgggagac
ttttgatggttttcattcttgtcactcattgcatgaaaaatacaactgac
atgaagaaaggaggaacaccaccataaactacatgaattagtagagctat
atcaggatcacctccaagaatctttcaccttcataaaaatcagactcaat
ggcatacagtagaatacaatccaagtgttatgcaataactcttccacaac
tcaactttgactgtagtatgttgcagaaatctctactcaaatataccccg
gcaatgaaaacacaacacagttaatatgattacatagtatgcacctagat
tgggcagatctaccactatactgccatcttccccagcttatgagacccct
tagaacttgaggtttctccaggccatgtgcttctgctccgcttttcttct
tactcctcttcttcctctgcatcctctccctcttccattttctccttctt
ctctctttataggaggttagagaaggaaagagagagaggaagggtgtagc
aaaaagacaagaaaagaaggaggtttgagaaggaaagatggtagtatagt
ggtagatctgcccaatctaggtccataccatgtattcatattaattgtgt
tgtgttttcattgctgggacatatttggaatggagaattaccacaatagg
agtaatccatgtttgtgcaccaattgtgccatatgactttctctgagaaa
ccaaacatgaaatgtctaataaccttcaggtggagcactgacagtggaac
agagaaatgattttactcaagcctagtttagtcaactcagtgagttttgt
tggtgttatcaaccattaattgaagtgtcactgacatgagatggggtgac
ttaaggttagatccattccattatatgtgtggcagcttacaaaagtgcta
tcactgaagtttccagggtcatcttacagaatatcttctaccaaaaaaga
gcatcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_62323507_62324511
seq2: B6Ng01-290J04.b_43_1047 (reverse)

seq1  ACACACACACACACACACATATATATATGTGCATTTACTTCTGTGGTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACATATATATATGTGCATTTACTTCTGTGGTCTA  50

seq1  TGACCCCTCTGCTCAAAAATGTACACACTCTATGAATATGTGACCAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCTCTGCTCAAAAATGTACACACTCTATGAATATGTGACCAACAG  100

seq1  AAGTTGTAAGGATTTTCCCTCTTCTAGCTTGCATTTGGTGGGGTAGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTAAGGATTTTCCCTCTTCTAGCTTGCATTTGGTGGGGTAGGGCT  150

seq1  TGCATAGCTATCACAATGTGAGGAATCACAAACATTCTCAGAGCGAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGCTATCACAATGTGAGGAATCACAAACATTCTCAGAGCGAGATT  200

seq1  TCAATTTTCTATGTTTCCAAACTTGATGAAGCTTACTACTAACAATCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTCTATGTTTCCAAACTTGATGAAGCTTACTACTAACAATCAGT  250

seq1  ATCAAAGAGAGCTGCTTTAAAGTAAATTCTTAACTCTAAAAGCACAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGAGAGCTGCTTTAAAGTAAATTCTTAACTCTAAAAGCACAGTAG  300

seq1  TAAAAGCAGAGATGAAAGAACTCTTCAAGCCACAAATGACTACAGATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCAGAGATGAAAGAACTCTTCAAGCCACAAATGACTACAGATTCC  350

seq1  ATTTTCAAAGAGGTTATTGCTCTGTGTTAAACCAATAGATTTGGGAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAAGAGGTTATTGCTCTGTGTTAAACCAATAGATTTGGGAAGTT  400

seq1  TGTGTGTAGCCATAGATAACTGGAATGTGAGAGATTCAAAATCAGATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTAGCCATAGATAACTGGAATGTGAGAGATTCAAAATCAGATTTA  450

seq1  TAAGAACTACCACAAATATGATAGATAATAGTAGGGCTTCTTTATTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACTACCACAAATATGATAGATAATAGTAGGGCTTCTTTATTTGAT  500

seq1  TAGAGGGACAGATGATAAGGGAAGAGAAAATTATTAAATATCACACAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGACAGATGATAAGGGAAGAGAAAATTATTAAATATCACACAAAT  550

seq1  CATACACCAGTTGTAATGCTTTAGTCCAGACGATGAAGAGGGAGGTTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACCAGTTGTAATGCTTTAGTCCAGACGATGAAGAGGGAGGTTAGT  600

seq1  TTAATGACTTCTGAAATTATGGGCCCTCAGCAACCTATGCTTACAATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGACTTCTGAAATTATGGGCCCTCAGCAACCTATGCTTACAATATG  650

seq1  CCATTAAGACACTTAAAATCTAAAATGTGTTTACCCAGCATTGAAGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAAGACACTTAAAATCTAAAATGTGTTTACCCAGCATTGAAGTTTT  700

seq1  CTTATACTAACAATCAAAGAGGCACTTGAAATTTGAGCATGTTTCATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACTAACAATCAAAGAGGCACTTGAAATTTGAGCATGTTTCATAGA  750

seq1  TACATGACCACATATCAAAGCTGTATAAAAGCTTTCTGATACATCCTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGACCACATATCAAAGCTGTATAAAAGCTTTCTGATACATCCTTAA  800

seq1  TTTTTTTATTATGATCTCTATCCTTTCAGAGATGTACCTGGAAGACCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATTATGATCTCTATCCTTTCAGAGATGTACCTGGAAGACCTCT  850

seq1  AGAAACAGCTTAGGCTTATAGTGTTTGAAACATTTTCTAAAACCTCATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGCTTAGGCTTATAGTGTTTGAAACATTTTCTAAAACCTCATAA  900

seq1  AAACTCTCAGGCATTTTGTTTCCTTTGCATTCTGTTCTTTGTTCGTTGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTCAGGCATTTTGTTTCCTTTGCATTCTGTTCTTTGTTCGTTGTC  950

seq1  CATCCTCCCGTTTCTACAAATAAAGACTTGGTAAATATTCTAGTACTGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCCCGTTTCTACAAATAAAGACTTGGTAAATATTCTAGTACTGTG  1000

seq1  AATTC  1005
      |||||
seq2  AATTC  1005


seq1: chr16_62217034_62218030
seq2: B6Ng01-290J04.g_66_1072

seq1  GAATTCTGCACTGAACCCATCTGGTCCTGGCCTTTTTTTGGTTGGGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACTGAACCCATCTGGTCCTGGCCTTTTTTTGGTTGGGAGAC  50

seq1  TTTTGATGGTTTTCATTCTTGTCACTCATTGCATGAAAAATACAACTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATGGTTTTCATTCTTGTCACTCATTGCATGAAAAATACAACTGAC  100

seq1  ATGAAGAAAGGAGGAACACCACCATAAACTACATGAATTAGTAGAGCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAAGGAGGAACACCACCATAAACTACATGAATTAGTAGAGCTAT  150

seq1  ATCAGGATCACCTCCAAGAATCTTTCACCTTCATAAAAATCAGACTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGATCACCTCCAAGAATCTTTCACCTTCATAAAAATCAGACTCAAT  200

seq1  GGCATACAGTAGAATACAATCCAAGTGTTATGCAATAACTCTTCCACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATACAGTAGAATACAATCCAAGTGTTATGCAATAACTCTTCCACAAC  250

seq1  TCAACTTTGACTGTAGTATGTTGCAGAAATCTCTACTCAAATATACCCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTTGACTGTAGTATGTTGCAGAAATCTCTACTCAAATATACCCCG  300

seq1  GCAATGAAAACACAACACAGTTAATATGATTACATAGTATGCACCTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAAAACACAACACAGTTAATATGATTACATAGTATGCACCTAGAT  350

seq1  TGGGCAGATCTACCACTATACTGCCATCTTCCCCAGCTTATGAGACCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGATCTACCACTATACTGCCATCTTCCCCAGCTTATGAGACCCCT  400

seq1  TAGAACTTGAGGTTTCTCCAGGCCATGTGCTTCTGCTCCGCTTTTCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTGAGGTTTCTCCAGGCCATGTGCTTCTGCTCCGCTTTTCTTCT  450

seq1  TACTCCTCTTCTTCCTCTGCATCCTCTCCCTCTTCCATTTTCTCCTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTCTTCTTCCTCTGCATCCTCTCCCTCTTCCATTTTCTCCTTCTT  500

seq1  CTCTCTTTATAGGAGGTTAGAGAAGGAAAGAGAGAGAGGAAGGGTGTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTATAGGAGGTTAGAGAAGGAAAGAGAGAGAGGAAGGGTGTAGC  550

seq1  AAAAAGACAAGAAAAGAAGGAGGTTTGAGAAGGAAAGATGGTAGTATAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACAAGAAAAGAAGGAGGTTTGAGAAGGAAAGATGGTAGTATAGT  600

seq1  GGTAGATCTGCCCAATCTAGGCCCACAGCATGTATTCATATTAATTGTGT  650
      ||||||||||||||||||||| ||| | ||||||||||||||||||||||
seq2  GGTAGATCTGCCCAATCTAGGTCCATACCATGTATTCATATTAATTGTGT  650

seq1  TGTGTTTTCATTGCTGGGACATATTTGGAATGGAGAATTACCACAATAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTCATTGCTGGGACATATTTGGAATGGAGAATTACCACAATAGG  700

seq1  AGTAATCCATGTTTGTGCACCAATTGTGCCATATGACTTTCTCTGAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCCATGTTTGTGCACCAATTGTGCCATATGACTTTCTCTGAGAAA  750

seq1  CCAAACATG-AATGTCTAATAACC-TCAGGTGGAGCACTGACAGTGGAAC  798
      ||||||||| |||||||||||||| |||||||||||||||||||||||||
seq2  CCAAACATGAAATGTCTAATAACCTTCAGGTGGAGCACTGACAGTGGAAC  800

seq1  AGAGAAATGATTTTACTCAAGCCTAGTTTAGTCAAC-CAGTGAG-TTTGT  846
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  AGAGAAATGATTTTACTCAAGCCTAGTTTAGTCAACTCAGTGAGTTTTGT  850

seq1  TGGTGTTATCAACCA-TAATTGAAGTGTCACTGACATGAGAATGGGTGAC  895
      ||||||||||||||| |||||||||||||||||||||||||  |||||||
seq2  TGGTGTTATCAACCATTAATTGAAGTGTCACTGACATGAGATGGGGTGAC  900

seq1  TTAAGG-TAGATCCATTCCATAATATGTGTGGCAGCTTACAAAAGGTGC-  943
      |||||| |||||||||||||| |||||||||||||||||||||| |||| 
seq2  TTAAGGTTAGATCCATTCCATTATATGTGTGGCAGCTTACAAAA-GTGCT  949

seq1  ATCACTGAAGTTTCCA-GGTCATCTTACAG-ATATC-TCTACC-AAAAAG  989
      |||||||||||||||| ||||||||||||| ||||| |||||| ||||||
seq2  ATCACTGAAGTTTCCAGGGTCATCTTACAGAATATCTTCTACCAAAAAAG  999

seq1  AGCATCCT  997
      ||||||||
seq2  AGCATCCT  1007


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