BAC Information

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BAC

Clone NameB6Ng01-290O13
Chromosome16 (Build37)
Map Location 33,616,235 - 33,796,015
singlet/doubletdoublet
Overlap geneSlc12a8, 4632417D23Rik, Heg1, Muc13
Upstream geneTfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4, Zfp148
Downstream geneItgb5, Umps, Kalrn, LOC100043670, Ropn1, Ccdc14, Mylk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290O13.bB6Ng01-290O13.g
ACCGA087933GA087934
length1,1241,041
definitionB6Ng01-290O13.b B6Ng01-290O13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,616,235 - 33,617,353)(33,794,968 - 33,796,015)
sequence
gaattcccataggccccgcccttgacagtccccttattgttcagtaggca
ctgccctggggagaggggagggcaagccctaacacaggggtatagtagag
ttttagcagagccattgtatctggcatgaacctgctgtgacctcagcttt
aaagtagccttttgtcagagattgttatctgagattttagggggttactc
tcttgaaggattctcagagactttgcatcacttagtctggagacatgcct
agcaaaccaggaagtacttatggttgagagtgggtctttcaagataacct
ctagactctttatttagtcttagtcagggtttctattcctgcacaaacat
catgaccaagaagcaggttggggaggaaagggtttattcagcttacactt
ccacgttgctgttcatcaccaaaggaagtcaggactggagctcaagcagg
tcaggaagcaggagctgatgcagaggccatggagggatgtttcttactgg
cttgcttcccctggcttgttcagcttgctttcttatagaacccaagacta
ccaacccagggatggtaccaaccatagtgggcctcccacccttaatcact
aattaagaaaatgccttacagctggatctcttggagtcatttcctcaagg
gaggctcctttctctatgataacctgtgtcaagttgacacacaaagccag
tcactacacccctagatcaggtaagtttccctattcgaagattgacctac
taaaggtgcttttttttgtacagcattagaaagagcttcgaggaggctgt
cagcattcagtccccgagagaccgatcccctgccgctgagaagcctaact
tcactgagcagtggctctctttaatttgtcctgtgtaacccagacacagg
gggccactgcaggacattcaaggatcagcccgtggtaacataggacatct
gcctctcatagtgtctctggttggtttcctcttctatgggctgtacaatc
tcatcccttgcttcctgtatgggggaactctattggcgcacccctggaat
cctgcagtgcatcgcccaaggaacaaaagtcatccctgcactcgcttctg
gccaatgggggggagatggctcac
gaattctctaacctctagccatttccccaagccttcccagcaaaggattc
ccttctcagtacccttatgtcttacagaaggcatttcttcttcatggtga
ctccagaaaatcacgtagatcttatcagttctaattgggacctgaagact
tggccacagcacccaggcttggcagaggagatctggtgaggcctaccctc
ctcttaggacagctcttctcccccaatcttaaaagcagatcaaaaaaaaa
atattggtccagggaataaagaaagaagtttgcttatggatagtattaaa
tatccattaatgatatttttagggtatgaaaggatatgaatataaaagtt
gaacacatttttaatgttatttgattctcaaaatactcaatattattaat
gtgtttgatgtataaaatgcatttaaataataaaaaaattaagaagaaaa
aaaagaaagaaagaaaagaagcctgctgccaaggctggccggctgtgttc
aatctcactcagggggtgggaggagagaaaccactttctgggagttgtcc
gatgtcctccacatgtatggtaattaaatgtagtaagaggtttcaaaagc
tcctatcttgccatgtatgttggctcatacctataacccagcactccaag
gcagttggatcagaagttcatctactgtatggagagttcagtttaacctt
ggtagcacgagattccatcccccaaacaaagcaagtcaagtggtccttta
cattgaactcaatttctcttcccccttccactgcctccaatgccttattc
ctttcttgcatttgacgtctagatctggatttctctcagaatggggtggg
gtgggggacaaattccttacctactcaaacccagataaactctccctagt
cagagaggaacacttgtaggggctctaacccccactggattgctcttttg
gcaaagatccccagtttcagtgtgtgaaaacagacctatcccgacccctc
aggtctgactctctgatgaatcacaggaaccagatcctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_33616235_33617353
seq2: B6Ng01-290O13.b_45_1168

seq1  GAATTCCCATAGGCCCCGCCCTTGACAGTCCCCTTATTGTTCAGTAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATAGGCCCCGCCCTTGACAGTCCCCTTATTGTTCAGTAGGCA  50

seq1  CTGCCCTGGGGAGAGGGGAGGGCAAGCCCTAACACAGGGGTATAGTAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGGGGAGAGGGGAGGGCAAGCCCTAACACAGGGGTATAGTAGAG  100

seq1  TTTTAGCAGAGCCATTGTATCTGGCATGAACCTGCTGTGACCTCAGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCAGAGCCATTGTATCTGGCATGAACCTGCTGTGACCTCAGCTTT  150

seq1  AAAGTAGCCTTTTGTCAGAGATTGTTATCTGAGATTTTAGGGGGTTACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGCCTTTTGTCAGAGATTGTTATCTGAGATTTTAGGGGGTTACTC  200

seq1  TCTTGAAGGATTCTCAGAGACTTTGCATCACTTAGTCTGGAGACATGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAGGATTCTCAGAGACTTTGCATCACTTAGTCTGGAGACATGCCT  250

seq1  AGCAAACCAGGAAGTACTTATGGTTGAGAGTGGGTCTTTCAAGATAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACCAGGAAGTACTTATGGTTGAGAGTGGGTCTTTCAAGATAACCT  300

seq1  CTAGACTCTTTATTTAGTCTTAGTCAGGGTTTCTATTCCTGCACAAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTCTTTATTTAGTCTTAGTCAGGGTTTCTATTCCTGCACAAACAT  350

seq1  CATGACCAAGAAGCAGGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCAAGAAGCAGGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTT  400

seq1  CCACGTTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAGCTCAAGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAGCTCAAGCAGG  450

seq1  TCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTTCTTACTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTTCTTACTGG  500

seq1  CTTGCTTCCCCTGGCTTGTTCAGCTTGCTTTCTTATAGAACCCAAGACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCCCCTGGCTTGTTCAGCTTGCTTTCTTATAGAACCCAAGACTA  550

seq1  CCAACCCAGGGATGGTACCAACCATAGTGGGCCTCCCACCCTTAATCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCAGGGATGGTACCAACCATAGTGGGCCTCCCACCCTTAATCACT  600

seq1  AATTAAGAAAATGCCTTACAGCTGGATCTCTTGGAGTCATTTCCTCAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGAAAATGCCTTACAGCTGGATCTCTTGGAGTCATTTCCTCAAGG  650

seq1  GAGGCTCCTTTCTCTATGATAACCTGTGTCAAGTTGACACACAAAGCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCCTTTCTCTATGATAACCTGTGTCAAGTTGACACACAAAGCCAG  700

seq1  TCACTACACCCCTAGATCAGGTAAGTTTCCCTATTCGAAGATTGACCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACACCCCTAGATCAGGTAAGTTTCCCTATTCGAAGATTGACCTAC  750

seq1  TAAAGGTGC-TTTTTTTGTACAGCATTAGAAAGAGCTTCGAGGAGGCTGT  799
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTGCTTTTTTTTGTACAGCATTAGAAAGAGCTTCGAGGAGGCTGT  800

seq1  CAGCATTCAGTCCCCGAGAGACCGATCCCCTGCCGCTGAGAAGCCTAACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTCAGTCCCCGAGAGACCGATCCCCTGCCGCTGAGAAGCCTAACT  850

seq1  TCACTGAGCAGTGGCTCTCTTTAATTTGTCCTGTGTAACCCAGACACA-G  898
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCACTGAGCAGTGGCTCTCTTTAATTTGTCCTGTGTAACCCAGACACAGG  900

seq1  GGGCCACTGCAGGACATTC-AGGATCAGCCCGTGGTAACAATAGGACATC  947
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  GGGCCACTGCAGGACATTCAAGGATCAGCCCGTGGTAAC-ATAGGACATC  949

seq1  TGCCTCTCATAGGTGTCTCTGGTTGGTTTCCTCTTCCTATTGGGCCTGTA  997
      ||||||||||| ||||||||||||||||||||||| ||||  || |||||
seq2  TGCCTCTCATA-GTGTCTCTGGTTGGTTTCCTCTT-CTAT--GGGCTGTA  995

seq1  C-ATCTCATCCCTGGCTTCCTGTATGGGGGGACTCTA-TGGCGCACCCC-  1044
      | ||||||||||| |||||||||||||||| |||||| ||||||||||| 
seq2  CAATCTCATCCCTTGCTTCCTGTATGGGGGAACTCTATTGGCGCACCCCT  1045

seq1  -GGATCCTGCAGTGCATCGCCC-AGGA--CAAAGTCATCCCTGCACTCGC  1090
       | ||||||||||||||||||| ||||   ||||||||||||||||||||
seq2  GGAATCCTGCAGTGCATCGCCCAAGGAACAAAAGTCATCCCTGCACTCGC  1095

seq1  CTTTCTGGCGAAT-GGGGTGAG-TGGCTCAC  1119
        ||||||| ||| |||| ||| ||||||||
seq2  --TTCTGGCCAATGGGGGGGAGATGGCTCAC  1124

seq1: chr16_33794968_33796015
seq2: B6Ng01-290O13.g_70_1110 (reverse)

seq1  TCTA-GATCT-GTTCCTGTGA-TCATCAGAGAGTCAGACCTGGAGGGGTC  47
      |||| ||||| |||||||||| ||||||||||||||||||| ||||||||
seq2  TCTAGGATCTGGTTCCTGTGATTCATCAGAGAGTCAGACCT-GAGGGGTC  49

seq1  GGGGATATGTCTGTTTTCACCAACACTTGAAACTGGGGATCTCTGGCCAA  97
       |||||| ||||||||||||  |||| ||||||||||||||| ||  | |
seq2  -GGGATAGGTCTGTTTTCAC--ACAC-TGAAACTGGGGATCTTTG--CCA  93

seq1  AAAGAGCAATCCCAGTGGGGGTTAGAGCCCCTACAGGTGTTCTTCTTCTG  147
      |||||||||| |||||||||||||||||||||||| |||||| || ||| 
seq2  AAAGAGCAAT-CCAGTGGGGGTTAGAGCCCCTACAAGTGTTCCTC-TCT-  140

seq1  GACTAGGGAGAGTTTATCTGGGTTTGAGTAGGTAAGGAATTTGTCCCCCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGGAGAGTTTATCTGGGTTTGAGTAGGTAAGGAATTTGTCCCCCA  190

seq1  CCCCACCCCATTCTGAGAGAAATCCAGATCTAGACGTCAAATGCAAGAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCATTCTGAGAGAAATCCAGATCTAGACGTCAAATGCAAGAAA  240

seq1  GGAATAAGGCATTGGAGGCAGTGGAAGGGGGAAGAGAAATTGAGTTCAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAGGCATTGGAGGCAGTGGAAGGGGGAAGAGAAATTGAGTTCAAT  290

seq1  GTAAAGGACCACTTGACTTGCTTTGTTTGGGGGATGGAATCTCGTGCTAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGACCACTTGACTTGCTTTGTTTGGGGGATGGAATCTCGTGCTAC  340

seq1  CAAGGTTAAACTGAACTCTCCATACAGTAGATGAACTTCTGATCCAACTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTAAACTGAACTCTCCATACAGTAGATGAACTTCTGATCCAACTG  390

seq1  CCTTGGAGTGCTGGGTTATAGGTATGAGCCAACATACATGGCAAGATAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAGTGCTGGGTTATAGGTATGAGCCAACATACATGGCAAGATAGG  440

seq1  AGCTTTTGAAACCTCTTACTACATTTAATTACCATACATGTGGAGGACAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTGAAACCTCTTACTACATTTAATTACCATACATGTGGAGGACAT  490

seq1  CGGACAACTCCCAGAAAGTGGTTTCTCTCCTCCCACCCCCTGAGTGAGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACAACTCCCAGAAAGTGGTTTCTCTCCTCCCACCCCCTGAGTGAGAT  540

seq1  TGAACACAGCCGGCCAGCCTTGGCAGCAGGCTTCTTTTCTTTCTTTCTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACAGCCGGCCAGCCTTGGCAGCAGGCTTCTTTTCTTTCTTTCTTT  590

seq1  TTTTTCTTCTTAATTTTTTTATTATTTAAATGCATTTTATACATCAAACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCTTAATTTTTTTATTATTTAAATGCATTTTATACATCAAACA  640

seq1  CATTAATAATATTGAGTATTTTGAGAATCAAATAACATTAAAAATGTGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATAATATTGAGTATTTTGAGAATCAAATAACATTAAAAATGTGTT  690

seq1  CAACTTTTATATTCATATCCTTTCATACCCTAAAAATATCATTAATGGAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTTATATTCATATCCTTTCATACCCTAAAAATATCATTAATGGAT  740

seq1  ATTTAATACTATCCATAAGCAAACTTCTTTCTTTATTCCCTGGACCAATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATACTATCCATAAGCAAACTTCTTTCTTTATTCCCTGGACCAATA  790

seq1  TTTTTTTTTTGATCTGCTTTTAAGATTGGGGGAGAAGAGCTGTCCTAAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGATCTGCTTTTAAGATTGGGGGAGAAGAGCTGTCCTAAGA  840

seq1  GGAGGGTAGGCCTCACCAGATCTCCTCTGCCAAGCCTGGGTGCTGTGGCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTAGGCCTCACCAGATCTCCTCTGCCAAGCCTGGGTGCTGTGGCC  890

seq1  AAGTCTTCAGGTCCCAATTAGAACTGATAAGATCTACGTGATTTTCTGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTCAGGTCCCAATTAGAACTGATAAGATCTACGTGATTTTCTGGA  940

seq1  GTCACCATGAAGAAGAAATGCCTTCTGTAAGACATAAGGGTACTGAGAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATGAAGAAGAAATGCCTTCTGTAAGACATAAGGGTACTGAGAAG  990

seq1  GGAATCCTTTGCTGGGAAGGCTTGGGGAAATGGCTAGAGGTTAGAGAATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCTTTGCTGGGAAGGCTTGGGGAAATGGCTAGAGGTTAGAGAATT  1040

seq1  C  1048
      |
seq2  C  1041