BAC Information

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BAC

Clone NameB6Ng01-291G12
Chromosome16 (Build37)
Map Location 27,321,612 - 27,322,717
singlet/doubletsinglet
Overlap geneOstn
Upstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
Downstream geneUts2d, Ccdc50, Fgf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291G12.bB6Ng01-291G12.g
ACCGA088299GA088300
length1,1071,016
definitionB6Ng01-291G12.b B6Ng01-291G12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagatccccagcacccataggcaagctggctacagcaacaggcac
ccatgagtccagtactggggatgttaagacagaacttctgatacttttta
gctagccagtctacccttgtcagtgagctccatattcagcaagagtgcct
agcttaaaaaataaaataaagtaaaatacttgatgttagcctctgaccta
ttttcacacacacacacacacacacacacacacacacacacacacacaca
ccatgattatattttaagaaacataagctttttatactacaatcagaaga
tcatagtataaccatcttcagaacacaaactcaagaagataaacattttt
gtgttacttactttcattgccaatggcattcaaggtcacagacttcaaat
acataaatgataataactattgagttaagagaattcagagcaagtgactt
agatatttttaaaagttaataagatctgtattcctcaaaaaaataaaaaa
gtaaaaattaatttattatcactacaaacattttaatttcatcattgcat
caacatgagatattattgtataaaatataaagttggttgcatgctgaatt
ttacatagttttggccaaaccttttattacaataggacacaaaattatgg
ggtttttttattatattagttggaagactaaaaaccctttccagatgttt
cagttcctgttattttgtctgtggtcttttgttctctcaagaagatgctt
tttcagggcttggtaggctgtgaccattggcttcatacagtagtcaagag
tattgcagccagatactgctgactgaataatgttctaagattcttgcagg
ccacaggtataggcacctgttacacccctggcacagttcctaggatgttc
agaatccccagcccttaacagcaggagtagtacaagttctgggccctaag
tgtctaaaggttcgtaaggcctgcccaaatgtctctggtataattccaaa
gactgtgattttacttttcctagctgtttagagcatgtgacctttcaact
cagtccctgatcatcacaccttctcttgactgcttcaatttattttgttt
tctgcct

gaattccccttaaagagatagcccctctggctatctatcccttgcttcag
ggaagatgagcagggatgagagccctgggatgtatgcttgttatagtgtg
tgtgtgtgttgtgtgtttgacacatgtgttaggtgcagcgtgagcaggcc
cgcactttcgccatggtagcgtaggcttttgctgcagtggaggcaggaca
atctcctcagattcggtttaccactctaaaagaaattatgctgtgttatg
ctgtgggttgcgaggctaagcactgcacagaggatagcttgctgttggca
tcctgtggaaggcatgtctgattgcatgaaggttcagtgtcctagttccc
ttcccccaggaaaaacgacacgggagctggccaagacctctctgggtgat
gagcccaagggatggttttgtgtagggcccctatgcttgcacactgggga
tcagacctttaccttcacccatgaggcttgcttgcagcaatcaaaatctg
gccatagattaatgaacatcctggccttttgatgcacctgccacaagcaa
aacacaatctccccaggtgtggcttggcatgatagagaggtagtcagtga
taagactccctgggcatgtcaccaacctaagacagagatcaaaccaatgc
tgtttgtctcccaaggacgggtaaggggcatggctgcggggagctatcta
cagacattctctctgccaaaaaagaaaaaagggggagatgtgaggagcgg
gtgtggcggcagtcccaaaggcgccagggactgcagctaagtcgtatgac
tttgcacctgactttcctcatataagccacaaacatcttgagagctgcgc
aggtgtaccaggattactggtgaatccatttttgatggagataatgcccc
ctgcttgccctgaatagctgaagctgtgtgaggtgggtgtggccttgctg
tgtgtggatgggaacttgacagtaatacaaaattgagaggcctaggtttg
ggggtgagaatataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_27321612_27322717
seq2: B6Ng01-291G12.b_48_1154

seq1  GAATTCAGATCCCCAGCACCCATAGGCAAGCTGGCTACAGCAACAGGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCCCCAGCACCCATAGGCAAGCTGGCTACAGCAACAGGCAC  50

seq1  CCATGAGTCCAGTACTGGGGATGTTAAGACAGAACTTCTGATACTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGTCCAGTACTGGGGATGTTAAGACAGAACTTCTGATACTTTTTA  100

seq1  GCTAGCCAGTCTACCCTTGTCAGTGAGCTCCATATTCAGCAAGAGTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCAGTCTACCCTTGTCAGTGAGCTCCATATTCAGCAAGAGTGCCT  150

seq1  AGCTTAAAAAATAAAATAAAGTAAAATACTTGATGTTAGCCTCTGACCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAAAAAATAAAATAAAGTAAAATACTTGATGTTAGCCTCTGACCTA  200

seq1  TTTTCACACACACACACACACACACACACACACACACACACACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACACACACACACACACACACACACACACACACACACACACACACA  250

seq1  CCATGATTATATTTTAAGAAACATAAGCTTTTTATACTACAATCAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATTATATTTTAAGAAACATAAGCTTTTTATACTACAATCAGAAGA  300

seq1  TCATAGTATAACCATCTTCAGAACACAAACTCAAGAAGATAAACATTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTATAACCATCTTCAGAACACAAACTCAAGAAGATAAACATTTTT  350

seq1  GTGTTACTTACTTTCATTGCCAATGGCATTCAAGGTCACAGACTTCAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTACTTACTTTCATTGCCAATGGCATTCAAGGTCACAGACTTCAAAT  400

seq1  ACATAAATGATAATAACTATTGAGTTAAGAGAATTCAGAGCAAGTGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATGATAATAACTATTGAGTTAAGAGAATTCAGAGCAAGTGACTT  450

seq1  AGATATTTTTAAAAGTTAATAAGATCTGTATTCCTCAAAAAAATAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTTTAAAAGTTAATAAGATCTGTATTCCTCAAAAAAATAAAAAA  500

seq1  GTAAAAATTAATTTATTATCACTACAAACATTTTAATTTCATCATTGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATTAATTTATTATCACTACAAACATTTTAATTTCATCATTGCAT  550

seq1  CAACATGAGATATTATTGTATAAAATATAAAGTTGGTTGCATGCTGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGAGATATTATTGTATAAAATATAAAGTTGGTTGCATGCTGAATT  600

seq1  TTACATAGTTTTGGCCAAACCTTTTATTACAATAGGACACAAAATTATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAGTTTTGGCCAAACCTTTTATTACAATAGGACACAAAATTATGG  650

seq1  GGTTTTTTTATTATATTAGTTGGAAGACTAAAAACCCTTTCCAGATGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTATTATATTAGTTGGAAGACTAAAAACCCTTTCCAGATGTTT  700

seq1  CAGTTCCTGTTATTTTGTCTGTGGTCTTTTGTTCTCTCAAGAAGATGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCTGTTATTTTGTCTGTGGTCTTTTGTTCTCTCAAGAAGATGCTT  750

seq1  TTTCAGGGCTTGGTAGGCTGTGACCATTGGCTTCATACAGTAGTCAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGGCTTGGTAGGCTGTGACCATTGGCTTCATACAGTAGTCAAGAG  800

seq1  TATTGCAGCCAGATACTGCTGACTGAATAATGTTCTAAGATTCTTGCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCAGCCAGATACTGCTGACTGAATAATGTTCTAAGATTCTTGCAGG  850

seq1  CCACAGGTATAGGCACCTGTTACACCCCTGGCACAG-TCCTAGGATGTTC  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCACAGGTATAGGCACCTGTTACACCCCTGGCACAGTTCCTAGGATGTTC  900

seq1  AGAATCCCCAGCCCTTAACAGCAGGGAGTAGTACAAGTTCTGGCCCTAAA  949
      ||||||||||||||||||||||| ||||||||||||||||||| ||  ||
seq2  AGAATCCCCAGCCCTTAACAGCA-GGAGTAGTACAAGTTCTGGGCCCTAA  949

seq1  GTGTCT-AAGGTTCGTAAGGCCTG-CCAAATGTCTCTGGTATAATTCCAA  997
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  GTGTCTAAAGGTTCGTAAGGCCTGCCCAAATGTCTCTGGTATAATTCCAA  999

seq1  AGACTGTGATTTTAC-TTTCCTAGCTGTTTAGAAGCATGTGACCTTCAAA  1046
      ||||||||||||||| |||||||||||||||| |||||||||||||  ||
seq2  AGACTGTGATTTTACTTTTCCTAGCTGTTTAG-AGCATGTGACCTTTCAA  1048

seq1  CTCAGGTCCCTGATCATTCACACCTTCTCTTGACTGCTTCCATTTATTTT  1096
      |||| ||||||||||| ||||||||||||||||||||||| |||||||||
seq2  CTCA-GTCCCTGATCA-TCACACCTTCTCTTGACTGCTTCAATTTATTTT  1096

seq1  G-TTTCTGCCT  1106
      | |||||||||
seq2  GTTTTCTGCCT  1107


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