BAC Information

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BAC

Clone NameB6Ng01-291J06
Chromosome16 (Build37)
Map Location 88,282,822 - 88,438,461
singlet/doubletdoublet
Overlap geneGrik1
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901
Downstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291J06.bB6Ng01-291J06.g
ACCGA088427GA088428
length1,1441,113
definitionB6Ng01-291J06.b B6Ng01-291J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,437,307 - 88,438,461)(88,282,822 - 88,283,910)
sequence
gaattcttgctgatacttcaaaatcatctcagcgtgacacatgttaagaa
tcgagtagatgtgttgctcgagtttcagtgagctgtgctgagaaactcaa
ggaaaactaattacttcaggagaattctctacgattaaagtaaaacaagc
atttgcagtggaaatttaatttatctgtcaatttgttccgcaaacacgga
ttactttagatacaatcatagtgatatttttgtctttctgctatggtggg
agctatgttcacaagatctattttcatgaataaaacattactaggtcatt
ttcaatgtcattttgtgtaactaaaccaaaaattgcctctgggacaaaag
atgccattaagagaaagatactatcaccttggtctaagacactgcatgta
actgctgggcctgaacaagaaaactctattaaggctactttccaagtttg
tattaactgcctgtgagacttgaaacaggatagatgtactagtccacatt
gtgtgtgtgtctatatctcatgtttatgtcatttcttacaaaactaacag
caaaacaaaggcatgcacacattcatgccaacatgcgcacataaattttc
aaaacattattaaaaatgaatagtaactctaaataacaatgatggcaaca
ttacagaatataaatattcttagctttggcattgtcttcaattatttcta
ttcttaataacaatcagtgaacagttttcaaaaatttggatttgcttgac
taattcattctcaaatagctagtgtacttttagttagtttttaagattta
atgaaaagttcttatctcttaaatgcattaaactacaaagcttacttttc
tacactaaagtattttctgttaatcacattcttattcacataaccaatta
atcaaacattagagatttaaaaaacaatccaccaaatttttaagtgcgga
gtgtatactcatttcatttaaatctgacacttactctgtgttgattgtgc
cacagtgaaatgatcagctaattccagaacttaaagatctgaaaccattg
ggacttagagcttatgcatgatatcagtttaagaagaatccaacatctat
aaaatagcctatgcatgactgcagtctttattaggagggagatg
gaattctttgcaaacagattgttgtaaatttccattcaaggacatcagca
cttaaccatctttaacagagtatattccaatgcctgaatcaatattcata
gttaaattacatttaattaagtatgaaaaaagcatgcacatgttggaacc
caagaagttaatggctgattctccataatctatttgcagaattctcagga
aggcatatagacatttttgtctgtagtaggttttatacaaagtttatttt
gttaacaattttctaacagtaactgctgttgtttttattttgaggagatc
ctttaaaaacacactatttagcatactatatagaaaaggatttttttcta
tttatcttaatagatttacttacagaactttatgtactgagaggaggtaa
ttccagaagacctggcatgctttgaggcttctggttttaatgtattttac
ttcttaataaggttttaatttatcaaaacattgagtaaatagcccacaga
attctcatatacagcaatgtatcacatacaccaatatactcaatgtctca
cacaccccaatatactcaatgtctcacatacaccaatatactcaatgtct
catgtaccccaatatactcaatgtctcacatatactagtatactcaaatg
actcctgtttatttactttcatgaagtactgtggcatatttgtcaagata
aaaagccactataaatgatttataaataataaatgttttgtttttatgca
aagtgcttagatttttacctcacatctttttctgttctgggatcttatac
ggatgctagtttacatttttttttctcattgtctttcagtagctttgact
gcagtgtgactgtttctatgctttccacgacctttggctctccctaataa
ggatgggtagtctagtttgaagttatacccttcttgctggaattttgtct
gctctttttaccttctgtggagtagggaaggaggggccaggcatcaaggg
ttcccttttctaccacactaatgtacttgctgcccttgaacttacattga
cccctcacccctgtccctccccacatttccctcccttagggaaacttgaa
ccttgtaacttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_88437307_88438461
seq2: B6Ng01-291J06.b_44_1187 (reverse)

seq1  CATCTCCCTCCCTATATAAAGACTGCAGTCATTGCATTAGGGCTATTTTT  50
      ||||||||| |||| |||||||||||||||| |||||   ||||||||| 
seq2  CATCTCCCT-CCTA-ATAAAGACTGCAGTCA-TGCAT--AGGCTATTTT-  44

seq1  AATAGGATG-TGGAATC-TCTTAAACCTGATTATCCATGCATAAGCTCTA  98
       ||| |||| |||| || ||||||| |||| ||| |||||||||||||||
seq2  -ATA-GATGTTGGATTCTTCTTAAA-CTGA-TAT-CATGCATAAGCTCTA  89

seq1  AGTTCCCAAATGGTTTCAGATCTTTAAGTTCTGGAATTAGCTGATCATTT  148
      |||  || ||||||||||||||||||||||||||||||||||||||||||
seq2  AGT--CCCAATGGTTTCAGATCTTTAAGTTCTGGAATTAGCTGATCATTT  137

seq1  CACTGT-GCACAATTCAACACAGAGTAAGTGTCAGATTTAAATGAAATGA  197
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGCACAA-TCAACACAGAGTAAGTGTCAGATTTAAATGAAATGA  186

seq1  GTATACACTCCGCACTTAAAAATTTGGTGGATTGTTTTTTAAATCTCTAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACACTCCGCACTTAAAAATTTGGTGGATTGTTTTTTAAATCTCTAA  236

seq1  TGTTTGATTAATTGGTTATGTGAATAAGAATGTGATTAACAGAAAATACT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGATTAATTGGTTATGTGAATAAGAATGTGATTAACAGAAAATACT  286

seq1  TTAGTGTAGAAAAGTAAGCTTTGTAGTTTAATGCATTTAAGAGATAAGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTAGAAAAGTAAGCTTTGTAGTTTAATGCATTTAAGAGATAAGAA  336

seq1  CTTTTCATTAAATCTTAAAAACTAACTAAAAGTACACTAGCTATTTGAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATTAAATCTTAAAAACTAACTAAAAGTACACTAGCTATTTGAGA  386

seq1  ATGAATTAGTCAAGCAAATCCAAATTTTTGAAAACTGTTCACTGATTGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTAGTCAAGCAAATCCAAATTTTTGAAAACTGTTCACTGATTGTT  436

seq1  ATTAAGAATAGAAATAATTGAAGACAATGCCAAAGCTAAGAATATTTATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAATAGAAATAATTGAAGACAATGCCAAAGCTAAGAATATTTATA  486

seq1  TTCTGTAATGTTGCCATCATTGTTATTTAGAGTTACTATTCATTTTTAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAATGTTGCCATCATTGTTATTTAGAGTTACTATTCATTTTTAAT  536

seq1  AATGTTTTGAAAATTTATGTGCGCATGTTGGCATGAATGTGTGCATGCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTGAAAATTTATGTGCGCATGTTGGCATGAATGTGTGCATGCCT  586

seq1  TTGTTTTGCTGTTAGTTTTGTAAGAAATGACATAAACATGAGATATAGAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGCTGTTAGTTTTGTAAGAAATGACATAAACATGAGATATAGAC  636

seq1  ACACACACAATGTGGACTAGTACATCTATCCTGTTTCAAGTCTCACAGGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAATGTGGACTAGTACATCTATCCTGTTTCAAGTCTCACAGGC  686

seq1  AGTTAATACAAACTTGGAAAGTAGCCTTAATAGAGTTTTCTTGTTCAGGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATACAAACTTGGAAAGTAGCCTTAATAGAGTTTTCTTGTTCAGGC  736

seq1  CCAGCAGTTACATGCAGTGTCTTAGACCAAGGTGATAGTATCTTTCTCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGTTACATGCAGTGTCTTAGACCAAGGTGATAGTATCTTTCTCTT  786

seq1  AATGGCATCTTTTGTCCCAGAGGCAATTTTTGGTTTAGTTACACAAAATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCATCTTTTGTCCCAGAGGCAATTTTTGGTTTAGTTACACAAAATG  836

seq1  ACATTGAAAATGACCTAGTAATGTTTTATTCATGAAAATAGATCTTGTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAAAATGACCTAGTAATGTTTTATTCATGAAAATAGATCTTGTGA  886

seq1  ACATAGCTCCCACCATAGCAGAAAGACAAAAATATCACTATGATTGTATC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCTCCCACCATAGCAGAAAGACAAAAATATCACTATGATTGTATC  936

seq1  TAAAGTAATCCGTGTTTGCGGAACAAATTGACAGATAAATTAAATTTCCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAATCCGTGTTTGCGGAACAAATTGACAGATAAATTAAATTTCCA  986

seq1  CTGCAAATGCTTGTTTTACTTTAATCGTAGAGAATTCTCCTGAAGTAATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATGCTTGTTTTACTTTAATCGTAGAGAATTCTCCTGAAGTAATT  1036

seq1  AGTTTTCCTTGAGTTTCTCAGCACAGCTCACTGAAACTCGAGCAACACAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCCTTGAGTTTCTCAGCACAGCTCACTGAAACTCGAGCAACACAT  1086

seq1  CTACTCGATTCTTAACATGTGTCACGCTGAGATGATTTTGAAGTATCAGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCGATTCTTAACATGTGTCACGCTGAGATGATTTTGAAGTATCAGC  1136

seq1  AAGAATTC  1155
      ||||||||
seq2  AAGAATTC  1144

seq1: chr16_88282822_88283910
seq2: B6Ng01-291J06.g_74_1186

seq1  GAATTCTTTGCAAACAGATTGTTGTAAATTTCCATTCAAGGACATCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCAAACAGATTGTTGTAAATTTCCATTCAAGGACATCAGCA  50

seq1  CTTAACCATCTTTAACAGAGTATATTCCAATGCCTGAATCAATATTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCATCTTTAACAGAGTATATTCCAATGCCTGAATCAATATTCATA  100

seq1  GTTAAATTACATTTAATTAAGTATGAAAAAAGCATGCACATGTTGGAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATTACATTTAATTAAGTATGAAAAAAGCATGCACATGTTGGAACC  150

seq1  CAAGAAGTTAATGGCTGATTCTCCATAATCTATTTGCAGAATTCTCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGTTAATGGCTGATTCTCCATAATCTATTTGCAGAATTCTCAGGA  200

seq1  AGGCATATAGACATTTTTGTCTGTAGTAGGTTTTATACAAAGTTTATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATATAGACATTTTTGTCTGTAGTAGGTTTTATACAAAGTTTATTTT  250

seq1  GTTAACAATTTTCTAACAGTAACTGCTGTTGTTTTTATTTTGAGGAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACAATTTTCTAACAGTAACTGCTGTTGTTTTTATTTTGAGGAGATC  300

seq1  CTTTAAAAACACACTATTTAGCATACTATATAGAAAAGGATTTTTTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAACACACTATTTAGCATACTATATAGAAAAGGATTTTTTTCTA  350

seq1  TTTATCTTAATAGATTTACTTACAGAACTTTATGTACTGAGAGGAGGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTAATAGATTTACTTACAGAACTTTATGTACTGAGAGGAGGTAA  400

seq1  TTCCAGAAGACCTGGCATGCTTTGAGGCTTCTGGTTTTAATGTATTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAAGACCTGGCATGCTTTGAGGCTTCTGGTTTTAATGTATTTTAC  450

seq1  TTCTTAATAAGGTTTTAATTTATCAAAACATTGAGTAAATAGCCCACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATAAGGTTTTAATTTATCAAAACATTGAGTAAATAGCCCACAGA  500

seq1  ATTCTCATATACAGCAATGTATCACATACACCAATATACTCAATGTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCATATACAGCAATGTATCACATACACCAATATACTCAATGTCTCA  550

seq1  CACACCCCAATATACTCAATGTCTCACATACACCAATATACTCAATGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCCAATATACTCAATGTCTCACATACACCAATATACTCAATGTCT  600

seq1  CATGTACCCCAATATACTCAATGTCTCACATATACTAGTATACTC-AATG  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CATGTACCCCAATATACTCAATGTCTCACATATACTAGTATACTCAAATG  650

seq1  ACTCCTG-TTATTTAC-TTCATGAAGTACTGTGGCATATTTGTCAAGATA  697
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  ACTCCTGTTTATTTACTTTCATGAAGTACTGTGGCATATTTGTCAAGATA  700

seq1  AAAAGCCACTATAAATGA-TTATAAATAATAAATG-TTTGTTTTTATGCA  745
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  AAAAGCCACTATAAATGATTTATAAATAATAAATGTTTTGTTTTTATGCA  750

seq1  AAGTGCTTAGA-TTTTACCTCACATCTTTTTCTGTTCTGGGATCTTATAC  794
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTTAGATTTTTACCTCACATCTTTTTCTGTTCTGGGATCTTATAC  800

seq1  GGATGCTAGTTTACA-TTTTTTTTCTCATTGTCTTTCAGTAGGCTTGACT  843
      ||||||||||||||| ||||||||||||||||||||||||||  ||||||
seq2  GGATGCTAGTTTACATTTTTTTTTCTCATTGTCTTTCAGTAGCTTTGACT  850

seq1  GCAGTGTGACTG-TTCTATGCTTTCCACGACC-TTGGCTCT-CCTAATAA  890
      |||||||||||| ||||||||||||||||||| |||||||| ||||||||
seq2  GCAGTGTGACTGTTTCTATGCTTTCCACGACCTTTGGCTCTCCCTAATAA  900

seq1  GGATTGGTAGTCTAGTTTGAAGTTATA-CCTTC-TGCTGGAA-TTTGTCT  937
      |||| |||||||||||||||||||||| ||||| |||||||| |||||||
seq2  GGATGGGTAGTCTAGTTTGAAGTTATACCCTTCTTGCTGGAATTTTGTCT  950

seq1  GCTC-TTTTACCATCTGTGGAGTAGGGAAGGA-GGGCCAGGCAGTCAAGG  985
      |||| ||||||| ||||||||||||||||||| |||||||||| ||||||
seq2  GCTCTTTTTACCTTCTGTGGAGTAGGGAAGGAGGGGCCAGGCA-TCAAGG  999

seq1  --TTCCTTTTCTACCACACTAATG-ACTTGCTGCCC-TGAAC-TACAATG  1030
        | |||||||||||||||||||| ||||||||||| ||||| |||| ||
seq2  GTTCCCTTTTCTACCACACTAATGTACTTGCTGCCCTTGAACTTACATTG  1049

seq1  A-CCCTCACCCCT-TTCCTCCCCAC-TTTCTCCCCCCTTGGGAAACTTG-  1076
      | ||||||||||| | ||||||||| |||| | ||| | |||||||||| 
seq2  ACCCCTCACCCCTGTCCCTCCCCACATTTCCCTCCCTTAGGGAAACTTGA  1099

seq1  ACCTTG-AACTTGA  1089
      |||||| |||||||
seq2  ACCTTGTAACTTGA  1113