BAC Information

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BAC

Clone NameB6Ng01-291N12
Chromosome16 (Build37)
Map Location 92,595,249 - 92,770,526
singlet/doubletdoublet
Overlap geneRunx1
Upstream geneTmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6
Downstream geneEG666023, LOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291N12.bB6Ng01-291N12.g
ACCGA088628GA088629
length1,152993
definitionB6Ng01-291N12.b B6Ng01-291N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,769,395 - 92,770,526)(92,595,249 - 92,596,234)
sequence
gaattctgtggaaacccagcagagcagagccctcatccacagtaagtccc
tgcttattgagaatgttttcacagaggacgcatctggcgtgaggcattcc
ctagaccaggaagacgctgggtattttcggtgttgccttgtgggctcaca
acaaaactttagagtaaatgagggcctggcagcgtgtcttccataacttt
gggccaggtgagaatattattcagacagacaccgaatctaggctatgcag
ttacaggtttacagtctggtagtactagtgtgttttcctgcatcttcatt
gattgcagtgtcttagcctagagtgaagttatgtctgctcaaacccacaa
caaatatctaactaccccagctctcaaatgcttgtgttgtaatggtggct
caaagtccatttaggggttgcatctcagccattcttcccagcgaagcagc
cagcaataacttgggcacaatgaaccatccgattagaactttggctaatg
gattggagtcaatgacttgactaaattgaccagattggcaactggctcag
aacttatattctcagctccagatcaaagatgaccctttagagatgggttt
cagaggatgcttcttagcatacaaaatcagcagcttttccaataaatagg
cctccaactttaggttattgagaaataacaacactcctgtctatcagcct
catgtcaatcaaatctccattcctgggaataatgaatgattgatctttgg
gaagagtaggggattcaacagtaggtggatcctgaaacttttccaatatt
ttacttcatttttgaacactaaaatgcatattaatagaaaacatgggtat
ttatgcttttggaattacttagtaaatcccttgttgatttaggcccaaat
tctccttccaagatttactttctgcaattcttccactataaacactccac
tccagtgccctctcacatccctgtttcttcctaagcctggtgtctcttca
cagactctctttcctcttcctgaactcccaggatgcttccgtcttcttca
gaagcccccaaatgcttacttgcccttaccaagacgttttcgaatctctg
aacatctctaccctcctggccctcaaaaacggaaatgaatctattctctc
cc
gaattcctggtagctgccacaccctgctgctcagataacattggccagaa
acttgtccttgggagcaataagtcagagggaggctgggaggtttgttctt
cctctacgcagccatgtgtctgtccatggggaggctgtttactgaggtaa
atagatacgtatgattggcagctgtgccttctctgaagttcattaacgga
agaaaggtgattatgtttttgcaacacaaatcctattgctctgcatgttg
taacaggaaagccattctctccaacaatcaaggcactcagagaaaccctt
cctccattcttgacagctaatgtagggaggagctggcgcccaccctcagg
cctctgctgagggtcagcttacccaggaaataaggccaaagaacgagaac
atctctcacctgttaatgtggaaagtcagagttcagccttgatgtggctc
tgcaaagagtcagccctaggtctctggcgggcttctcagcagatggaata
ctacattctcatgagacccaccaggcactgtcctctacaagcacacctac
cagagggtcttagcatgtcctgtcagctattgtactttccactcagaagg
agtctccatctttgggactggaggaactagcaaagatcattcagttctgt
ctccccctctccctggaccactagcctggggctgcaagatagacttgtct
ttccccagacttccgtcttaagtaatggccacttcacccttgggttgctc
aactgctaaagatttcccccttaatctatcagcagatcatctctactttc
caagtgagttcaaagtcttctttacctgctgtaccacagtagttctcagc
agggtgagaaaactgggaaccgacccagccacccagctgtgtcctagtga
cagagtcatttcctttgctcatgatttctttcctcccaggacaacaggtc
gattcgtttttcaccagaagccttgcagactcacccaaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_92769395_92770526
seq2: B6Ng01-291N12.b_51_1202 (reverse)

seq1  GGGAGAGAA-AGGATCATTTCCGTTTTTGAAGG-CAGGAGGGTAGAGATG  48
      ||||||||| ||  |||||||||||||||| || ||||||||||||||||
seq2  GGGAGAGAATAGATTCATTTCCGTTTTTGAGGGCCAGGAGGGTAGAGATG  50

seq1  -TCAGAGA--CTGAAACGTCTTTGTAAGG--CAGT-AGCATTTGGGG--C  90
       |||||||  |  ||||||||| ||||||   ||| |||||||||||   
seq2  TTCAGAGATTCGAAAACGTCTTGGTAAGGGCAAGTAAGCATTTGGGGGCT  100

seq1  TCTGAAGAAGACGGAAGCATCCT-GGAGTTCAGGAAGAGGAAAGAGAGTC  139
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTGAAGAAGACGGAAGCATCCTGGGAGTTCAGGAAGAGGAAAGAGAGTC  150

seq1  TTGGAAGAGACA-CAGGC-TGGGAAG-AACAGGGATGTGAGA-GGCACTG  185
      |  ||||||||| ||||| | ||||| ||||||||||||||| |||||||
seq2  TGTGAAGAGACACCAGGCTTAGGAAGAAACAGGGATGTGAGAGGGCACTG  200

seq1  GAGTGGAGTGTTTATAGT-GAAGAATTGCAGAAAGTAAATCTTGGAA-GA  233
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  GAGTGGAGTGTTTATAGTGGAAGAATTGCAGAAAGTAAATCTTGGAAGGA  250

seq1  GAATTTGGGCCTAAATC-ACAAGGGATTTACTAAGT-ATTCCAAAAGCAT  281
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  GAATTTGGGCCTAAATCAACAAGGGATTTACTAAGTAATTCCAAAAGCAT  300

seq1  AAATACCCATGTTTTCTATTAATATGCATTTTAGTGTTC-AAAATGAAGT  330
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAATACCCATGTTTTCTATTAATATGCATTTTAGTGTTCAAAAATGAAGT  350

seq1  AAAATATTGGAAAAGTTTCAGGATCCACCTACTGTTGAATCCCCTACTCT  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTGGAAAAGTTTCAGGATCCACCTACTGTTGAATCCCCTACTCT  400

seq1  TCCCAAAGATCAATCATTCATTATTCCCAGGAATGGAGATTTGATTGACA  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGATCAATCATTCATTATTCCCAGGAATGGAGATTTGATTGACA  450

seq1  TGAGGCTGATAGACAGGAGTGTTGTTATTTCTCAATAACCTAAAGTTGGA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGATAGACAGGAGTGTTGTTATTTCTCAATAACCTAAAGTTGGA  500

seq1  GGCCTATTTATTGGAAAAGCTGCTGATTTTGTATGCTAAGAAGCATCCTC  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTATTTATTGGAAAAGCTGCTGATTTTGTATGCTAAGAAGCATCCTC  550

seq1  TGAAACCCATCTCTAAAGGGTCATCTTTGATCTGGAGCTGAGAATATAAG  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCCATCTCTAAAGGGTCATCTTTGATCTGGAGCTGAGAATATAAG  600

seq1  TTCTGAGCCAGTTGCCAATCTGGTCAATTTAGTCAAGTCATTGACTCCAA  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGCCAGTTGCCAATCTGGTCAATTTAGTCAAGTCATTGACTCCAA  650

seq1  TCCATTAGCCAAAGTTCTAATCGGATGGTTCATTGTGCCCAAGTTATTGC  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAGCCAAAGTTCTAATCGGATGGTTCATTGTGCCCAAGTTATTGC  700

seq1  TGGCTGCTTCGCTGGGAAGAATGGCTGAGATGCAACCCCTAAATGGACTT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTTCGCTGGGAAGAATGGCTGAGATGCAACCCCTAAATGGACTT  750

seq1  TGAGCCACCATTACAACACAAGCATTTGAGAGCTGGGGTAGTTAGATATT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACCATTACAACACAAGCATTTGAGAGCTGGGGTAGTTAGATATT  800

seq1  TGTTGTGGGTTTGAGCAGACATAACTTCACTCTAGGCTAAGACACTGCAA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGGGTTTGAGCAGACATAACTTCACTCTAGGCTAAGACACTGCAA  850

seq1  TCAATGAAGATGCAGGAAAACACACTAGTACTACCAGACTGTAAACCTGT  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAAGATGCAGGAAAACACACTAGTACTACCAGACTGTAAACCTGT  900

seq1  AACTGCATAGCCTAGATTCGGTGTCTGTCTGAATAATATTCTCACCTGGC  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCATAGCCTAGATTCGGTGTCTGTCTGAATAATATTCTCACCTGGC  950

seq1  CCAAAGTTATGGAAGACACGCTGCCAGGCCCTCATTTACTCTAAAGTTTT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTATGGAAGACACGCTGCCAGGCCCTCATTTACTCTAAAGTTTT  1000

seq1  GTTGTGAGCCCACAAGGCAACACCGAAAATACCCAGCGTCTTCCTGGTCT  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAGCCCACAAGGCAACACCGAAAATACCCAGCGTCTTCCTGGTCT  1050

seq1  AGGGAATGCCTCACGCCAGATGCGTCCTCTGTGAAAACATTCTCAATAAG  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATGCCTCACGCCAGATGCGTCCTCTGTGAAAACATTCTCAATAAG  1100

seq1  CAGGGACTTACTGTGGATGAGGGCTCTGCTCTGCTGGGTTTCCACAGAAT  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACTTACTGTGGATGAGGGCTCTGCTCTGCTGGGTTTCCACAGAAT  1150

seq1  TC  1132
      ||
seq2  TC  1152

seq1: chr16_92595249_92596234
seq2: B6Ng01-291N12.g_70_1062

seq1  GAATTCCTGGTAGCTGCCACACCCTGCTGCTCAGATAACATTGGCCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTAGCTGCCACACCCTGCTGCTCAGATAACATTGGCCAGAA  50

seq1  ACTTGTCCTTGGGAGCAATAAGTCAGAGGGAGGCTGGGAGGTTTGTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCCTTGGGAGCAATAAGTCAGAGGGAGGCTGGGAGGTTTGTTCTT  100

seq1  CCTCTACGCAGCCATGTGTCTGTCCATGGGGAGGCTGTTTACTGAGGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACGCAGCCATGTGTCTGTCCATGGGGAGGCTGTTTACTGAGGTAA  150

seq1  ATAGATACGTATGATTGGCAGCTGTGCCTTCTCTGAAGTTCATTAACGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATACGTATGATTGGCAGCTGTGCCTTCTCTGAAGTTCATTAACGGA  200

seq1  AGAAAGGTGATTATGTTTTTGCAACACAAATCCTATTGCTCTGCATGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTGATTATGTTTTTGCAACACAAATCCTATTGCTCTGCATGTTG  250

seq1  TAACAGGAAAGCCATTCTCTCCAACAATCAAGGCACTCAGAGAAACCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGAAAGCCATTCTCTCCAACAATCAAGGCACTCAGAGAAACCCTT  300

seq1  CCTCCATTCTTGACAGCTAATGTAGGGAGGAGCTGGCGCCCACCCTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATTCTTGACAGCTAATGTAGGGAGGAGCTGGCGCCCACCCTCAGG  350

seq1  CCTCTGCTGAGGGTCAGCTTACCCAGGAAATAAGGCCAAAGAACGAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTGAGGGTCAGCTTACCCAGGAAATAAGGCCAAAGAACGAGAAC  400

seq1  ATCTCTCACCTGTTAATGTGGAAAGTCAGAGTTCAGCCTTGATGTGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCACCTGTTAATGTGGAAAGTCAGAGTTCAGCCTTGATGTGGCTC  450

seq1  TGCAAAGAGTCAGCCCTAGGTCTCTGGCGGGCTTCTCAGCAGATGGAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGAGTCAGCCCTAGGTCTCTGGCGGGCTTCTCAGCAGATGGAATA  500

seq1  CTACATTCTCATGAGACCCACCAGGCACTGTCCTCTACAAGCACACCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTCTCATGAGACCCACCAGGCACTGTCCTCTACAAGCACACCTAC  550

seq1  CAGAGGGTCTTAGCATGTCCTGTCAGCTATTGTACTTTCCACTCAGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGTCTTAGCATGTCCTGTCAGCTATTGTACTTTCCACTCAGAAGG  600

seq1  AGTCTCCATCTTTGGGACTGGAGGAACTAGCAAAGATCATTCAGTTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCATCTTTGGGACTGGAGGAACTAGCAAAGATCATTCAGTTCTGT  650

seq1  CTCCCCCTCTCCCTGGACCACTAGCCTGGGGCTGCAAGATAGACTTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTCTCCCTGGACCACTAGCCTGGGGCTGCAAGATAGACTTGTCT  700

seq1  TTCCCCAGACTTCCGTCTTAAGTAATGGCCACTTCACCCTTGGGTTGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAGACTTCCGTCTTAAGTAATGGCCACTTCACCCTTGGGTTGCTC  750

seq1  AACTGCTAAAGATTTCCCCCTTAATCTATCAGCAGATCATCTCTACTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTAAAGATTTCCCCCTTAATCTATCAGCAGATCATCTCTACTTTC  800

seq1  CAAGTGAGTTCAAAGTCTTC-TTACCTGCTGTACCACAGTAGTTCTCAGC  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAAGTGAGTTCAAAGTCTTCTTTACCTGCTGTACCACAGTAGTTCTCAGC  850

seq1  AGGGTGAGAAAACT-GGAACCGACCCAGCCACCCAGCTGTGTCCTAGTGA  898
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGAAAACTGGGAACCGACCCAGCCACCCAGCTGTGTCCTAGTGA  900

seq1  CAGAGTCATTTCCTTTGCTCATGA-TTCTTTCCT-CCAGGACAACAGGTC  946
      |||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  CAGAGTCATTTCCTTTGCTCATGATTTCTTTCCTCCCAGGACAACAGGTC  950

seq1  GA-TCGTTTTCACCCAGAAGCCTTGCAGACTCACC--AGGGGG  986
      || |||||||   ||||||||||||||||||||||  ||||||
seq2  GATTCGTTTTTCACCAGAAGCCTTGCAGACTCACCCAAGGGGG  993