BAC Information

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BAC

Clone NameB6Ng01-291O12
Chromosome16 (Build37)
Map Location 86,119,139 - 86,247,850
singlet/doubletdoublet
Overlap geneLOC100039780
Upstream geneApp, Cyyr1, LOC100039994, LOC622000, Adamts1, Adamts5, LOC100040025
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291O12.bB6Ng01-291O12.g
ACCGA088676GA088677
length1,213411
definitionB6Ng01-291O12.b B6Ng01-291O12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,119,139 - 86,120,347)(86,247,434 - 86,247,850)
sequence
gaattcttttgtaatgctaagaaatgtgctaaaggactaaaatcatggaa
tgctgatttaggggatagtcaagagggaacctggagtgaaggactgaatt
gatatatcaatgatcactaggcttttgttctgcatgagatgagttagcaa
aataaaatagtgatttcttacttagattttttcctagcaagagttgagct
gtctggagatctctggagagtgaatatatctcttttacgttttacgtttt
tgtttttgtttttgttttctaataggatttctgatttttgttggaaaatc
tatggagagtgaacacagctcttttaaaagttttcatagcttcttcagaa
attttctagtaggaaatgccaagaatgacttaaaagagaacacagctctt
acaatttttttctagcactcacccagaaagaactacatagagagcaaaca
tagttcttctagattatttctggtttcctgattttgatcataatacccca
aaattagaattattttttagcatgagagacgtgtctcaagcccagggttg
tctttagcagaaagttatcctaaacagaacctagaactatccaaagagag
ctatctagggaaccatcttgaacataacacagccttggccccatggtttt
actttgaatcatttgtttcattactcctataaactccttctctcaggaag
ccagacgtagcaaagactcatctttggtgggttggtggttcattctctgg
taccccccaaatgccaggttagttgactctgttggtcttcctatggagtc
tctgacctcttcagattcctcaattctgctctgaactctttcccaagatt
cccctagatccatctaatgtttgactgtgggtctctgcatctgtttccat
tggctcttggatgaagcctctcagaggacagttatactatctgtttgata
aggaatggtatgctttagaataaacaaagtgggtttttattgtctgtgga
ttcatttctccattctaaatggtcctgtgtgctctgaacataatgagaaa
ggtaaaagttctgctatacaactgatgatgagcctcattttgactgactc
attgactgatgacattaaccacatttcatctgctccaattctccagctac
tgattgagaagcctcagttttaaggctatatgagagattctgttcagata
ctcattatacttc

tttgttcttaatccaaggcagaaaaatattacacaaccattagatacttc
aaacatgagcagtaattcattattactgtcttctcaattcattttacaaa
gctcttaatctcgctgtaagtaggaacatgactcagcttacctctggtta
tcctttttctagagcttgtcaattgcatttttctgccttgtatatatgcc
ctgtaaaaatgattttatctttgtcaatagagttcgaattactattgttt
caatggacctattacgagtgtaatatcttttttattttgaaagtacactt
taaatcagagttgcttttatacaaatttatacaaaagctaaagtgcaaag
cagcagtagatgctgcaaaggaagaggaggaagaggaggaggatgaggag
gaagaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_86119139_86120347
seq2: B6Ng01-291O12.b_49_1261

seq1  GAATTCTTTTGTAATGCTAAGAAATGTGCTAAAGGACTAAAATCATGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTAATGCTAAGAAATGTGCTAAAGGACTAAAATCATGGAA  50

seq1  TGCTGATTTAGGGGATAGTCAAGAGGGAACCTGGAGTGAAGGACTGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATTTAGGGGATAGTCAAGAGGGAACCTGGAGTGAAGGACTGAATT  100

seq1  GATATATCAATGATCACTAGGCTTTTGTTCTGCATGAGATGAGTTAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATCAATGATCACTAGGCTTTTGTTCTGCATGAGATGAGTTAGCAA  150

seq1  AATAAAATAGTGATTTCTTACTTAGATTTTTTCCTAGCAAGAGTTGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAGTGATTTCTTACTTAGATTTTTTCCTAGCAAGAGTTGAGCT  200

seq1  GTCTGGAGATCTCTGGAGAGTGAATATATCTCTTTTACGTTTTACGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGATCTCTGGAGAGTGAATATATCTCTTTTACGTTTTACGTTTT  250

seq1  TGTTTTTGTTTTTGTTTTCTAATAGGATTTCTGATTTTTGTTGGAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTTTTGTTTTCTAATAGGATTTCTGATTTTTGTTGGAAAATC  300

seq1  TATGGAGAGTGAACACAGCTCTTTTAAAAGTTTTCATAGCTTCTTCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGAGTGAACACAGCTCTTTTAAAAGTTTTCATAGCTTCTTCAGAA  350

seq1  ATTTTCTAGTAGGAAATGCCAAGAATGACTTAAAAGAGAACACAGCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAGTAGGAAATGCCAAGAATGACTTAAAAGAGAACACAGCTCTT  400

seq1  ACAATTTTTTTCTAGCACTCACCCAGAAAGAACTACATAGAGAGCAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTTTTCTAGCACTCACCCAGAAAGAACTACATAGAGAGCAAACA  450

seq1  TAGTTCTTCTAGATTATTTCTGGTTTCCTGATTTTGATCATAATACCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTCTAGATTATTTCTGGTTTCCTGATTTTGATCATAATACCCCA  500

seq1  AAATTAGAATTATTTTTTAGCATGAGAGACGTGTCTCAAGCCCAGGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGAATTATTTTTTAGCATGAGAGACGTGTCTCAAGCCCAGGGTTG  550

seq1  TCTTTAGCAGAAAGTTATCCTAAACAGAACCTAGAACTATCCAAAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGCAGAAAGTTATCCTAAACAGAACCTAGAACTATCCAAAGAGAG  600

seq1  CTATCTAGGGAACCATCTTGAACATAACACAGCCTTGGCCCCATGGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTAGGGAACCATCTTGAACATAACACAGCCTTGGCCCCATGGTTTT  650

seq1  ACTTTGAATCATTTGTTTCATTACTCCTATAAACTCCTTCTCTCAGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAATCATTTGTTTCATTACTCCTATAAACTCCTTCTCTCAGGAAG  700

seq1  CCAGACGTAGCAAAGACTCATCTTTGGTGGGTTGGTGGTTCATTCTCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACGTAGCAAAGACTCATCTTTGGTGGGTTGGTGGTTCATTCTCTGG  750

seq1  TACCCCCCAAATGCCAGGTTAGTTGACTCTGTTGGTCTTCCTATGGAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCCAAATGCCAGGTTAGTTGACTCTGTTGGTCTTCCTATGGAGTC  800

seq1  TCTGACCTCTTCAGATTCCTCAATTCTGCTCTGAACTCTTTCCCAAGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTCTTCAGATTCCTCAATTCTGCTCTGAACTCTTTCCCAAGATT  850

seq1  CCCCTAGATCCATCTAATGTTTGACTGTGGGTCTCTGCATCTGTTTCCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAGATCCATCTAATGTTTGACTGTGGGTCTCTGCATCTGTTTCCAT  900

seq1  TGGCTCTTGGATGAAGCCTCTCAGAGGACAGTTATACTATCTGTTTGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTGGATGAAGCCTCTCAGAGGACAGTTATACTATCTGTTTGATA  950

seq1  AGGAATGGTATGCTTTAG-ATAAACAAAGTGGG-TTTTATTGTCTGTGGA  998
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  AGGAATGGTATGCTTTAGAATAAACAAAGTGGGTTTTTATTGTCTGTGGA  1000

seq1  TTCATTTCTCCATTCTAAATGGTCCTGTGTGCTCCTGAACATAATGAGAA  1048
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTCATTTCTCCATTCTAAATGGTCCTGTGTGCT-CTGAACATAATGAGAA  1049

seq1  AGGTAAAAAGTTCTGCTATACAACTGATGATGAGCCTCATTTTGACTGAC  1098
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGT-AAAAGTTCTGCTATACAACTGATGATGAGCCTCATTTTGACTGAC  1098

seq1  TCATTTGACTGATGACATTAA-CACATTTCCATCCTGCTCCCAATATCTC  1147
      ||| ||||||||||||||||| ||||||| ||| ||||||| | | || |
seq2  TCA-TTGACTGATGACATTAACCACATTT-CAT-CTGCTCCAATTCTC-C  1144

seq1  AGCTACTGATTTGAGAAACCTCAGTTTTAAGG-TATATGAG-GTTTCTG-  1194
      ||||||||| ||||||| |||||||||||||| |||||||| | ||||| 
seq2  AGCTACTGA-TTGAGAAGCCTCAGTTTTAAGGCTATATGAGAGATTCTGT  1193

seq1  TCAG-TAC----TATACTTC  1209
      |||| |||    ||||||||
seq2  TCAGATACTCATTATACTTC  1213


seq1: chr16_86247434_86247850
seq2: B6Ng01-291O12.g_69_485 (reverse)

seq1  TCCTCCTCTTCCTCCTCATCCTCCTCCTCTTCCTCCTCTTCCTTTGCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCTTCCTCCTCATCCTCCTCCTCTTCCTCCTCTTCCTTTGCAGC  50

seq1  ATCTACTGCTGCTTTGCACTTTAGCTTTTGTATAAATTTGTATAAAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTGCTGCTTTGCACTTTAGCTTTTGTATAAATTTGTATAAAAGCA  100

seq1  ACTCTGATTTAAAGTGTACTTTCAAAATAAAAAAGATATTACACTCGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGATTTAAAGTGTACTTTCAAAATAAAAAAGATATTACACTCGTAA  150

seq1  TAGGTCCATTGAAACAATAGTAATTCGAACTCTATTGACAAAGATAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCCATTGAAACAATAGTAATTCGAACTCTATTGACAAAGATAAAAT  200

seq1  CATTTTTACAGGGCATATATACAAGGCAGAAAAATGCAATTGACAAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTACAGGGCATATATACAAGGCAGAAAAATGCAATTGACAAGCTC  250

seq1  TAGAAAAAGGATAACCAGAGGTAAGCTGAGTCATGTTCCTACTTACAGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAGGATAACCAGAGGTAAGCTGAGTCATGTTCCTACTTACAGCG  300

seq1  AGATTAAGAGCTTTGTAAAATGAATTGAGAAGACAGTAATAATGAATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAGAGCTTTGTAAAATGAATTGAGAAGACAGTAATAATGAATTAC  350

seq1  TGCTCATGTTTGAAGTATCTAATGGTTGTGTAATATTTTTCTGCCTTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATGTTTGAAGTATCTAATGGTTGTGTAATATTTTTCTGCCTTGGA  400

seq1  TTAAGAACAAAGAATTC  417
      |||||||||||||||||
seq2  TTAAGAACAAAGAATTC  417


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