BAC Information

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BAC

Clone NameB6Ng01-292M24
Chromosome16 (Build37)
Map Location 28,898,345 - 29,046,500
singlet/doubletdoublet
Overlap gene1600021P15Rik, EG666717
Upstream geneFgf12
Downstream geneHrasls, Atp13a5, Atp13a4, Opa1, Gm1968, LOC100043102, 9030404E10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292M24.bB6Ng01-292M24.g
ACCGA089354GA089355
length1,1681,091
definitionB6Ng01-292M24.b B6Ng01-292M24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,045,327 - 29,046,500)(28,898,345 - 28,899,447)
sequence
gaattctgtggatttaatagaaagttatagaaagtgtggatattctggga
gaggctgctgcattgtgggagagccatcagggaagtctggcttgaataat
ttgagggaaaagcaaagatatttttgacatttatctactttcaaaatgtc
tagctaaatcgtctgtaaaaaatccaactaattcataccattaagcctgg
cctccaagtttcttttctaaatactgacacatgaacttacccaagatatc
ataggagtagtttgctagtaacagttcacatttatcaaaatggtaaggta
ttggtgtgactttagaaatgaactacatctaggagcagtaattgcttgtt
ggcatctgttcttagatacattattctcaccctaagcatggggaagcgtg
ccactgatccagcatctgaatgattcgcagacaaaagcaaacagacaccg
cgagctgcacacctgtagttctgacacctctgccaaaacaaaacaacaca
acagtgaaatgtaaggcctaaataattccagggactccaattctgttttg
gttcttttcaaaatgtcatttaacattccaaataaattgagctgcctcct
aaagataaaaaaaggctaacactaaaaatccttaaattattcttactcca
cagaggttcttaagatagatagttttacatggttgagtctctcttgtcct
ctacagaaatcttattttatacataaaaaaaaaatcctaggatgtattgt
ttgcaagatgatttgataattttaataagagtgaaatagaaaacatctgg
tagaaaatatggaagaattcctactaactaaattaaataatataattata
ttctaggctacagagtcaagatctcagagtcaaaaggttagacagttaga
aagctcttgcagttcaactgtgagctaatgacctctggtaataaatatga
cctacaagcatattttgaggggcttcataaattttatcaacatgatttta
tgaaatggtaaaatttaagacatttatgttctcacttgtctcctacaatg
ttctgtatttgcaggtctttctcttttctgtcccagcataggagctgttt
ctctgtcagcctcacctgagttgtcaacagctatttgcgatcagaagcat
cttaccatatctgtgctg

gaattccagggtgctgactggtgggggggaatgctgaatgggctgaagca
agctgtaccctggggaggacagtgcccttagcagaaatccttctgtgtcc
tattctagccctggaaggttctaacgttcccttcccaggtacaccccact
ggaacacagagcccatggggcacggcctagagctggccagcaccaacagc
ctggaccaaagtctccaaggagaccaacaggtagagagggctaaggtaca
cggttgctctcagaactggccaaggtggaaggcatttcagccaacaggga
tgaaaccaaagccctctcttaggcctcggaaaggctttcctctcctcctc
cctcatgcttccttctccatctactgcctgtctcttccattagcagcaca
agcacttctgctagaaagccacggacggacgggaggcgctgtgccaagca
cagctcagagaggacaggagccatcacggggagggtcagacacagcagtg
cgaagggctgtcagaagcagaaagacagaactcctacctcatcaaccctt
aggagcttccgctgatcagagacactgctcccagagcaaataaatgttta
attgattaatgtcataaacaattaagacggggtttcattgcaaagaatac
ccacagcaggaaagacttttaaacttcctcttaaatccccaaggcagtca
gcgctgacacctggccgtaggccacattcttcaaatgccaaacctttctc
gggatttcgctccctggagtagagactggagaggaaatctggaagaccct
gggcacctccaccccactgggatcccaggctacccccagcaagggactgc
agaaagaataaacacgaaatacattggtgcatagtggtttcccactatgg
ggctgaagatgtttattagggatgcgctaccttaagagaggagaaagagc
cagaaaaaaagcccaggcaacaagccttcctcctcacttgactgcactag
acatctctacttactagtctctcagaaaaagggatggccagcagtgcttg
gcagcgaccgctcccaggagctgacagctaaggagacactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_29045327_29046500
seq2: B6Ng01-292M24.b_46_1213 (reverse)

seq1  CAGCACAGATA-GGTAGGGTTGCTTCTCTGAACGC-AATAGCTGTTGACA  48
      ||||||||||| ||||  | ||||  ||||| ||| ||||||||||||||
seq2  CAGCACAGATATGGTA-AGATGCT--TCTGATCGCAAATAGCTGTTGACA  47

seq1  ACTCCAGGTTGAGCTGACAGAGGAAAACAAGGCTCCTATGCTGGGACAG-  97
      ||| |||||   ||||||||||  |||||  |||||||||||||||||| 
seq2  ACT-CAGGTGAGGCTGACAGAG--AAACA--GCTCCTATGCTGGGACAGA  92

seq1  AAAGAG-AAGACTTGCAAATACAGACATTTGTAGGAGACAAGTTGAG-AC  145
      |||||| ||||| ||||||||||||   |||||||||||||| |||| ||
seq2  AAAGAGAAAGACCTGCAAATACAGAACATTGTAGGAGACAAG-TGAGAAC  141

seq1  ATAAATGTCTTAAATTTTTACCCTTTCATAAAAATCATGTTGATAAAATT  195
      |||||||||||||| ||||||| |||||| ||||||||||||||||||||
seq2  ATAAATGTCTTAAA-TTTTACCATTTCAT-AAAATCATGTTGATAAAATT  189

seq1  TATGAAGCCCCCTCAAAATATGCTTGTAGGTCATATTTATTACCAGAGGT  245
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAG-CCCCTCAAAATATGCTTGTAGGTCATATTTATTACCAGAGGT  238

seq1  CATTAGCTCACAGTTGAACTGCAAGAGCCTTCTAACTGTCTAACCTTTTG  295
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CATTAGCTCACAGTTGAACTGCAAGAGCTTTCTAACTGTCTAACCTTTTG  288

seq1  ACTCTGAGATCTTGACTCTGTAGCCTAGAATATAATTATATTATTTAATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGATCTTGACTCTGTAGCCTAGAATATAATTATATTATTTAATT  338

seq1  TAGTTAGTAGGAATTCTTCCATATTTTCTACCAGATGTTTTCTATTTCAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGTAGGAATTCTTCCATATTTTCTACCAGATGTTTTCTATTTCAC  388

seq1  TCTTATTAAAATTATCAAATCATCTTGCAAACAATACATCCTAGGA-TTT  444
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCTTATTAAAATTATCAAATCATCTTGCAAACAATACATCCTAGGATTTT  438

seq1  TTTTTTATGTATAAAATAAGATTTCTGTAGAGGACAAGAGAGACTCAACC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATGTATAAAATAAGATTTCTGTAGAGGACAAGAGAGACTCAACC  488

seq1  ATGTAAAACTATCTATCTTAAGAACCTCTGTGGAGTAAGAATAATTTAAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAACTATCTATCTTAAGAACCTCTGTGGAGTAAGAATAATTTAAG  538

seq1  GATTTTTAGTGTTAGCCTTTTTTTATCTTTAGGAGGCAGCTCAATTTATT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTAGTGTTAGCCTTTTTTTATCTTTAGGAGGCAGCTCAATTTATT  588

seq1  TGGAATGTTAAATGACATTTTGAAAAGAACCAAAACAGAATTGGAGTCCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGTTAAATGACATTTTGAAAAGAACCAAAACAGAATTGGAGTCCC  638

seq1  TGGAATTATTTAGGCCTTACATTTCACTGTTGTGTTGTTTTGTTTTGGCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTATTTAGGCCTTACATTTCACTGTTGTGTTGTTTTGTTTTGGCA  688

seq1  GAGGTGTCAGAACTACAGGTGTGCAGCTCGCGGTGTCTGTTTGCTTTTGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTCAGAACTACAGGTGTGCAGCTCGCGGTGTCTGTTTGCTTTTGT  738

seq1  CTGCGAATCATTCAGATGCTGGATCAGTGGCACGCTTCCCCATGCTTAGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGAATCATTCAGATGCTGGATCAGTGGCACGCTTCCCCATGCTTAGG  788

seq1  GTGAGAATAATGTATCTAAGAACAGATGCCAACAAGCAATTACTGCTCCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAATAATGTATCTAAGAACAGATGCCAACAAGCAATTACTGCTCCT  838

seq1  AGATGTAGTTCATTTCTAAAGTCACACCAATACCTTACCATTTTGATAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAGTTCATTTCTAAAGTCACACCAATACCTTACCATTTTGATAAA  888

seq1  TGTGAACTGTTACTAGCAAACTACTCCTATGATATCTTGGGTAAGTTCAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACTGTTACTAGCAAACTACTCCTATGATATCTTGGGTAAGTTCAT  938

seq1  GTGTCAGTATTTAGAAAAGAAACTTGGAGGCCAGGCTTAATGGTATGAAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGTATTTAGAAAAGAAACTTGGAGGCCAGGCTTAATGGTATGAAT  988

seq1  TAGTTGGATTTTTTACAGACGATTTAGCTAGACATTTTGAAAGTAGATAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGATTTTTTACAGACGATTTAGCTAGACATTTTGAAAGTAGATAA  1038

seq1  ATGTCAAAAATATCTTTGCTTTTCCCTCAAATTATTCAAGCCAGACTTCC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAAAATATCTTTGCTTTTCCCTCAAATTATTCAAGCCAGACTTCC  1088

seq1  CTGATGGCTCTCCCACAATGCAGCAGCCTCTCCCAGAATATCCACACTTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGCTCTCCCACAATGCAGCAGCCTCTCCCAGAATATCCACACTTT  1138

seq1  CTATAACTTTCTATTAAATCCACAGAATTC  1174
      ||||||||||||||||||||||||||||||
seq2  CTATAACTTTCTATTAAATCCACAGAATTC  1168


seq1: chr16_28898345_28899447
seq2: B6Ng01-292M24.g_65_1155

seq1  GAATTCCAGGGTGCTGACTGGTGGGGGGGAATGCTGAATGGGCTGAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGTGCTGACTGGTGGGGGGGAATGCTGAATGGGCTGAAGCA  50

seq1  AGCTGTACCCTGGGGAGGACAGTGCCCTTAGCAGAAATCCTTCTGTGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTACCCTGGGGAGGACAGTGCCCTTAGCAGAAATCCTTCTGTGTCC  100

seq1  TATTCTAGCCCTGGAAGGTTCTAACGTTCCCTTCCCAGGTACACCCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAGCCCTGGAAGGTTCTAACGTTCCCTTCCCAGGTACACCCCACT  150

seq1  GGAACACAGAGCCCATGGGGCACGGCCTAGAGCTGGCCAGCACCAACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACAGAGCCCATGGGGCACGGCCTAGAGCTGGCCAGCACCAACAGC  200

seq1  CTGGACCAAAGTCTCCAAGGAGACCAACAGGTAGAGAGGGCTAAGGTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCAAAGTCTCCAAGGAGACCAACAGGTAGAGAGGGCTAAGGTACA  250

seq1  CGGTTGCTCTCAGAACTGGCCAAGGTGGAAGGCATTTCAGCCAACAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGCTCTCAGAACTGGCCAAGGTGGAAGGCATTTCAGCCAACAGGGA  300

seq1  TGAAACCAAAGCCCTCTCTTAGGCCTCGGAAAGGCTTTCCTCTCCTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCAAAGCCCTCTCTTAGGCCTCGGAAAGGCTTTCCTCTCCTCCTC  350

seq1  CCTCATGCTTCCTTCTCCATCTACTGCCTGTCTCTTCCATTAGCAGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGCTTCCTTCTCCATCTACTGCCTGTCTCTTCCATTAGCAGCACA  400

seq1  AGCACTTCTGCTAGAAAGCCACGGACGGACGGGAGGCGCTGTGCCAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTCTGCTAGAAAGCCACGGACGGACGGGAGGCGCTGTGCCAAGCA  450

seq1  CAGCTCAGAGAGGACAGGAGCCATCACGGGGAGGGTCAGACACAGCAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGAGAGGACAGGAGCCATCACGGGGAGGGTCAGACACAGCAGTG  500

seq1  CGAAGGGCTGTCAGAAGCAGAAAGACAGAACTCCTACCTCATCAACCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGGCTGTCAGAAGCAGAAAGACAGAACTCCTACCTCATCAACCCTT  550

seq1  AGGAGCTTCCGCTGATCAGAGACACTGCTCCCAGAGCAAATAAATGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTTCCGCTGATCAGAGACACTGCTCCCAGAGCAAATAAATGTTTA  600

seq1  ATTGATTAATGTCATAAACAATTAAGACGGGGTTTCATTGCAAAGAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTAATGTCATAAACAATTAAGACGGGGTTTCATTGCAAAGAATAC  650

seq1  CCACAGCAGGAAAGACTTTTAAACTTCCTCTTAAATCCCCAAGGCAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCAGGAAAGACTTTTAAACTTCCTCTTAAATCCCCAAGGCAGTCA  700

seq1  GCGCTGACACCTGGCCGTAGGCCACATTCTTCAAATGCCAAACCTTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGACACCTGGCCGTAGGCCACATTCTTCAAATGCCAAACCTTTCTC  750

seq1  GGGATTTCGCTCCCTGGAGTAGAGACTGGAGAGGAAATCTGGAAGACCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTCGCTCCCTGGAGTAGAGACTGGAGAGGAAATCTGGAAGACCCT  800

seq1  GGGCACCTCCACCCCACTGGGATCCCAGGCTACCCCCAGCAAGGGACTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCTCCACCCCACTGGGATCCCAGGCTACCCCCAGCAAGGGACTGC  850

seq1  AGAAAGAATAAACACGAAATACATTGGTGCATAGTGGTTTCCCACTATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAATAAACACGAAATACATTGGTGCATAGTGGTTTCCCACTATGG  900

seq1  GGCTGAAGATGTTTATTAGGGATGCGCTACCTTAAAGAGAGGAGAAAGAG  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGCTGAAGATGTTTATTAGGGATGCGCTACCTT-AAGAGAGGAGAAAGAG  949

seq1  CCAGAAAAAAAGCCCAGGCAACAAGCCTTCCTCCTCAACCTTGACTGGCA  1000
      |||||||||||||||||||||||||||||||||||||  ||||||| |||
seq2  CCAGAAAAAAAGCCCAGGCAACAAGCCTTCCTCCTCA--CTTGACT-GCA  996

seq1  CTAGACATCTCTACCTACTAGTCTCTCAGAAAAGGGAATGGCCCAAGGCA  1050
      |||||||||||||| |||||||||||||||||| || ||||||  ||   
seq2  CTAGACATCTCTACTTACTAGTCTCTCAGAAAAAGGGATGGCC--AG--C  1042

seq1  AGTGGCCTTTGGCAGCGGACCGCCCCCCAGGGAGCTGACAGCT-AGGAGA  1099
      ||||    |||||||| |||||| |||   ||||||||||||| ||||||
seq2  AGTG---CTTGGCAGC-GACCGCTCCC--AGGAGCTGACAGCTAAGGAGA  1086

seq1  -ACTG  1103
       ||||
seq2  CACTG  1091


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