BAC Information

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BAC

Clone NameB6Ng01-294E16
Chromosome16 (Build37)
Map Location 80,974,575 - 81,119,936
singlet/doubletdoublet
Overlap genenone
Upstream gene1700066C05Rik, LOC621365, LOC100039724
Downstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294E16.bB6Ng01-294E16.g
ACCGA090459GA090460
length1,123563
definitionB6Ng01-294E16.b B6Ng01-294E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,974,575 - 80,975,688)(81,119,366 - 81,119,936)
sequence
gaattctgtagccatttccctcgcagcgacatgtcacatttaaaagttcc
ctgcagcacctcacagatgttattggaatacaaaactctattgttttgta
tactatggagaccagctgaattaacatgaagtagaccattatttcctctc
attttttcttgttcaagaatatctcaacatcaattttcttctccagttgg
attttataatgaggtatgacttttaaatctgatttttatcatatcctaca
aaataaatctttaacccacagggctaaaaaattccatttgtattcatcaa
gtctattacattgcctttagtcataagctcgccaacactattgcctagaa
cacagaaaggcacagaaaggaggatatttcattccttttttttttttttt
ctaaagtcctccagttttcccagctcctttaggaacttgttcacacattt
aataatgtctcctgtcaaaatgctcatttttctatctctcacaacttcaa
ccttgttattaacacttttaaagaaaaatccctatagggtagggaaactt
taaggagagctacacagatactaatcataaacacaaagaattgtcacctt
ttagtttattggaattttgttgagtaacattaagcttaataaaaatgaaa
cataaaattgataaactagtgggaaagtttctacttttctctcgttattt
gtttccttgaaaaatgaaaatgaaggaaaatattagcaaaacacctatac
tgaaatgacagttacacttactctagataatttttagtgtatgagaaatt
ttcagactgctatatatctaaattttgccaaactcttagttattttattc
attataaaggtaaaatctatgaatccagcatatgtgttctaaagtaatat
ttccaattagaatatattatatatatgaatatatatatatatacatatat
attatgtaacttttcttaaatatgaatgtatatgagagaaatacagggat
agacaagttacaggagggttatggtaggtaaatataggaaggaggagatg
gagagttaaaataacaggaaagaacatctgggaaaaaatagtaggtatcc
acaatattatggatctaacaata
gaattcatggattttcttccaagtagattaagtactagttattcctgtta
gtattcttggtatttatatccaatcgtatagaaaacacacacacacacac
acacacacacacacacacacacacacacacacaccaatactctgagagag
agagagagagagagagagagagagagagagaattgttttgagaataatgt
tgttgctagtgctgatttccagctgtcatgcatttgacaaaattatctag
agtcaaagttggcagatgtcttattatatcacctacttattcatatcact
tttcacatataaatgatccctttctgtaaaactgagtgaaataaaaatat
gctgaactctttcagatacttaaatgaatataaagttagtttttgatgga
agtagccatatttgaaattgatttctcattgagtgggagccaaactgaag
aatcagaaaactttgacagatgagtcagagataggatctgcacaacactc
gggataccaatagaagagaggagagttatgatcaagagtgagagcagaga
cagagggtgagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_80974575_80975688
seq2: B6Ng01-294E16.b_47_1169

seq1  GAATTCTGTAGCCATTTCCCTCGCAGCGACATGTCACATTTAAAAGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGCCATTTCCCTCGCAGCGACATGTCACATTTAAAAGTTCC  50

seq1  CTGCAGCACCTCACAGATGTTATTGGAATACAAAACTCTATTGTTTTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCACCTCACAGATGTTATTGGAATACAAAACTCTATTGTTTTGTA  100

seq1  TACTATGGAGACCAGCTGAATTAACATGAAGTAGACCATTATTTCCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGGAGACCAGCTGAATTAACATGAAGTAGACCATTATTTCCTCTC  150

seq1  ATTTTTTCTTGTTCAAGAATATCTCAACATCAATTTTCTTCTCCAGTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCTTGTTCAAGAATATCTCAACATCAATTTTCTTCTCCAGTTGG  200

seq1  ATTTTATAATGAGGTATGACTTTTAAATCTGATTTTTATCATATCCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAATGAGGTATGACTTTTAAATCTGATTTTTATCATATCCTACA  250

seq1  AAATAAATCTTTAACCCACAGGGCTAAAAAATTCCATTTGTATTCATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATCTTTAACCCACAGGGCTAAAAAATTCCATTTGTATTCATCAA  300

seq1  GTCTATTACATTGCCTTTAGTCATAAGCTCGCCAACACTATTGCCTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTACATTGCCTTTAGTCATAAGCTCGCCAACACTATTGCCTAGAA  350

seq1  CACAGAAAGGCACAGAAAGGAGGATATTTCATTCCTTTTTTTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAGGCACAGAAAGGAGGATATTTCATTCCTTTTTTTTTTTTTTT  400

seq1  CTAAAGTCCTCCAGTTTTCCCAGCTCCTTTAGGAACTTGTTCACACATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTCCTCCAGTTTTCCCAGCTCCTTTAGGAACTTGTTCACACATTT  450

seq1  AATAATGTCTCCTGTCAAAATGCTCATTTTTCTATCTCTCACAACTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTCTCCTGTCAAAATGCTCATTTTTCTATCTCTCACAACTTCAA  500

seq1  CCTTGTTATTAACACTTTTAAAGAAAAATCCCTATAGGGTAGGGAAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTATTAACACTTTTAAAGAAAAATCCCTATAGGGTAGGGAAACTT  550

seq1  TAAGGAGAGCTACACAGATACTAATCATAAACACAAAGAATTGTCACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGAGCTACACAGATACTAATCATAAACACAAAGAATTGTCACCTT  600

seq1  TTAGTTTATTGGAATTTTGTTGAGTAACATTAAGCTTAATAAAAATGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTATTGGAATTTTGTTGAGTAACATTAAGCTTAATAAAAATGAAA  650

seq1  CATAAAATTGATAAACTAGTGGGAAAGTTTCTACTTTTCTCTCGTTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATTGATAAACTAGTGGGAAAGTTTCTACTTTTCTCTCGTTATTT  700

seq1  GTTTCCTTGAAAAATGAAAATGAAGGAAAATATTAGCAAAACACCTATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTGAAAAATGAAAATGAAGGAAAATATTAGCAAAACACCTATAC  750

seq1  TGAAATGACAGTTACACTTACTCTAGATAATTTTTAGTGTATGAGAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGACAGTTACACTTACTCTAGATAATTTTTAGTGTATGAGAAATT  800

seq1  TTCAGACTGCTATATATCTAAATTTTGCCAAACTCTTAGTTATTTTATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACTGCTATATATCTAAATTTTGCCAAACTCTTAGTTATTTTATTC  850

seq1  ATTATAAAGGTAAAATCTATGAATCCAGCATATGTGTTCTAAAGTAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAGGTAAAATCTATGAATCCAGCATATGTGTTCTAAAGTAATAT  900

seq1  TTCCAATTAGAATATATTATATATATGAATATATATATATATACATATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTAGAATATATTATATATATGAATATATATATATATACATATAT  950

seq1  ATTATGTAACTTTTCTTAAATATGAATGTATATGAGAGAAAATACAGGGA  1000
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTATGTAACTTTTCTTAAATATGAATGTATATGAGAG-AAATACAGGGA  999

seq1  TAGACAAGTTACA-GAGGG-TAT-GTAGGTAAATATAGAAAG--AGAGAT  1045
      ||||||||||||| ||||| ||| |||||||||||||| |||   |||||
seq2  TAGACAAGTTACAGGAGGGTTATGGTAGGTAAATATAGGAAGGAGGAGAT  1049

seq1  -GAGAG-TAAAATAACAGGAAAG-ACATCTGG--AAAAATAGTAAGTAAT  1090
       ||||| |||||||||||||||| ||||||||  |||||||||| |||  
seq2  GGAGAGTTAAAATAACAGGAAAGAACATCTGGGAAAAAATAGTAGGTATC  1099

seq1  CACAATATTAATGATCTACCAATA  1114
      ||||||||||  |||||| |||||
seq2  CACAATATTATGGATCTAACAATA  1123

seq1: chr16_81119366_81119936
seq2: B6Ng01-294E16.g_67_629 (reverse)

seq1  CTCTCACCCCTCTGTCTCTTGCTCTCACTCTTGATCATAACTCTCCTCTC  50
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  CTCTCA-CCCTCTGTCTC-TGCTCTCACTCTTGATCATAACTCTCCTCTC  48

seq1  TTTCCTATTGGTTATCCCGAGTGTTGTGCAGATCCTATCTCTGACTCATT  100
      ||  ||||||| |||||||||||||||||||||||||||||||||||| |
seq2  TT--CTATTGG-TATCCCGAGTGTTGTGCAGATCCTATCTCTGACTCA-T  94

seq1  CTGTCAAAGTTTTCTGATTCTTCAGTTTGGCTCCCACTCAATGAGAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAAGTTTTCTGATTCTTCAGTTTGGCTCCCACTCAATGAGAAATC  144

seq1  AATTTCAAATATGGCTACTTCCATCAAAAACTAACTTTATATTCATTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAATATGGCTACTTCCATCAAAAACTAACTTTATATTCATTTAA  194

seq1  GTATCTGAAAGAGTTCAGCATATTTTTATTTCACTCAGTTTTACAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGAAAGAGTTCAGCATATTTTTATTTCACTCAGTTTTACAGAAAG  244

seq1  GGATCATTTATATGTGAAAAGTGATATGAATAAGTAGGTGATATAATAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATTTATATGTGAAAAGTGATATGAATAAGTAGGTGATATAATAAG  294

seq1  ACATCTGCCAACTTTGACTCTAGATAATTTTGTCAAATGCATGACAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGCCAACTTTGACTCTAGATAATTTTGTCAAATGCATGACAGCTG  344

seq1  GAAATCAGCACTAGCAACAACATTATTCTCAAAACAATTCTCTCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  GAAATCAGCACTAGCAACAACATTATTCTCAAAACAAT--TCTCTCTCTC  392

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCAGAGTATTGGTGTGTGTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCAGAGTATTGGTGTGTGTGTGTG  442

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCTATACGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCTATACGATT  492

seq1  GGATATAAATACCAAGAATACTAACAGGAATAACTAGTACTTAATCTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATAAATACCAAGAATACTAACAGGAATAACTAGTACTTAATCTACT  542

seq1  TGGAAGAAAATCCATGAATTC  571
      |||||||||||||||||||||
seq2  TGGAAGAAAATCCATGAATTC  563