BAC Information

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BAC

Clone NameB6Ng01-295D15
Chromosome8 (Build37)16 (Build37)
Map Location 92,986,851 - 92,987,99382,804,079 - 82,804,583
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTox3
Downstream geneLOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l, AJ237917
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295D15.bB6Ng01-295D15.g
ACCGA091148GA091149
length1,145963
definitionB6Ng01-295D15.b B6Ng01-295D15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,986,851 - 92,987,993)(82,804,079 - 82,804,583)
sequence
gaattcagccaatagccagtaagtttggaggaggattctgagtaaaggct
tgtgagccccagaaaccatgaggtagctttgtgctaagctgaaatgaaca
gaagaatattctatatgacaagagaaaaggggaatataaaggaatagaga
aagaaacttctactctagccctgaagaagtataagatgcacctgtgggga
cttgagttttcatcagagcatataagcttgcatctgcaaaagttataaga
aaaatagaaaaaatatagctaaagagagtttttttttaatctagtaaatt
tgtttagaatttcaagcaccattgcgtgggtgtgcccggttcttgcttgg
tcttgtgcacaagtcctaggatgttcagggtctgggtttagtccacttta
cagactgggaaagagaaggtactattagtagagcccacgtcagataggtg
cagacaccagcaaagtgaggacttcacacacacccttgatactgtatcca
gtgttaaggctgggtagggtgggaccatgtagactaccacttactatata
tctatagatgtatagcttttaaatcaagaccaaagctggtaaataacatc
ttctagcctcctacactggtaaatggacttcataatgattataaaggact
ttttatttttttaaagacaagctcgtgtcgcttagctcctattgaggtat
ctctaaagggatgcaactgttcagagcccccataagacctactgaggcgt
cggtttagcccctacaggtgtcagcttctccctgtgctctgttttccttc
cttactgtcctatagaagtgtcccccaagaacatacccaggggatccagt
ctaggagagtcaccctgtcatctctgattcgctcatgaaatgtcctacag
gtggctcttctaatctgcacctttacctcctgatctttcctcctcagcct
gccacctgctggtgcattccctgctggcttccaagctaaagagtcaccca
ttttctcaggaagaaaaatgtcccccactaccctcctgctgtctgtcatc
ctgagaccaactcagccttagagcatgctagcaaatgttccatccctgaa
gaatacatccagccccaccatcttctaccttataaacgcactagt

gaattctttgtttagcacatattaaggaattctaaattgtgtctgaagga
gattacaaaaaatgaacctaaatccaatcttcgctctatataaacatttg
atataaagcaatctaatttaaatattgtgttttagattgaaaatacattt
tgtacaatctattctcatcacagtttccctcctgcaactcctcccagatc
agatcccctccacctctgtacccacccaactctataccttctctctattt
aggaaacaagtagacaaaacagcataaaaaaactatgagaaaggaacagg
aaacataaacatacacatatacgcacacacacacacacacacacacacac
aaaacaaaacacaaactggaaaccataatatacaagcaagaagaccagta
agacaaaacaaaacaaacaaatgaacaaacaaatgaacaaacaaacaaac
aaacaaaaaacaaaacaaaaaacctacaaaacacccttaaattcatttgt
gttggtagtgcactgctgggcttccttttatccttaagtattgttagtat
ccccagtgggactccattggagaaaatactttttcttttgcaagtggttg
tcaattggaaagagtgtcttggttagagatgggagtccatgtccccttcc
tcctctcagctctgggacttcatctggcttgaacctgggtaagccctgtg
catgctgccaaagtctctaagttcatacgtgcatcagttctgttgtatct
ggaagacatagtttccttggtgccctccattccctctggctctcataatt
tttccacctcctcttctgcatagctccctgagcccctaggggtagaggtg
gcagtgggtgatggagacatcccatttaggattggctgttcccaagtctc
ttcctctctgcacattggttgtcaatctctgcatttggttcccatctacc
gcaagaaagaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_92986851_92987993
seq2: B6Ng01-295D15.b_49_1193

seq1  GAATTCAGCCAATAGCCAGTAAGTTTGGAGGAGGATTCTGAGTAAAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCAATAGCCAGTAAGTTTGGAGGAGGATTCTGAGTAAAGGCT  50

seq1  TGTGAGCCCCAGAAACCATGAGGTAGCTTTGTGCTAAGCTGAAATGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCCCAGAAACCATGAGGTAGCTTTGTGCTAAGCTGAAATGAACA  100

seq1  GAAGAATATTCTATATGACAAGAGAAAAGGGGAATATAAAGGAATAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATATTCTATATGACAAGAGAAAAGGGGAATATAAAGGAATAGAGA  150

seq1  AAGAAACTTCTACTCTAGCCCTGAAGAAGTATAAGATGCACCTGTGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTTCTACTCTAGCCCTGAAGAAGTATAAGATGCACCTGTGGGGA  200

seq1  CTTGAGTTTTCATCAGAGCATATAAGCTTGCATCTGCAAAAGTTATAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTTTCATCAGAGCATATAAGCTTGCATCTGCAAAAGTTATAAGA  250

seq1  AAAATAGAAAAAATATAGCTAAAGAGAGTTTTTTTTTAATCTAGTAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAAAAAATATAGCTAAAGAGAGTTTTTTTTTAATCTAGTAAATT  300

seq1  TGTTTAGAATTTCAAGCACCATTGCGTGGGTGTGCCCGGTTCTTGCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGAATTTCAAGCACCATTGCGTGGGTGTGCCCGGTTCTTGCTTGG  350

seq1  TCTTGTGCACAAGTCCTAGGATGTTCAGGGTCTGGGTTTAGTCCACTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGCACAAGTCCTAGGATGTTCAGGGTCTGGGTTTAGTCCACTTTA  400

seq1  CAGACTGGGAAAGAGAAGGTACTATTAGTAGAGCCCACGTCAGATAGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGGGAAAGAGAAGGTACTATTAGTAGAGCCCACGTCAGATAGGTG  450

seq1  CAGACACCAGCAAAGTGAGGACTTCACACACACCCTTGATACTGTATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACCAGCAAAGTGAGGACTTCACACACACCCTTGATACTGTATCCA  500

seq1  GTGTTAAGGCTGGGTAGGGTGGGACCATGTAGACTACCACTTACTATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAAGGCTGGGTAGGGTGGGACCATGTAGACTACCACTTACTATATA  550

seq1  TCTATAGATGTATAGCTTTTAAATCAAGACCAAAGCTGGTAAATAACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGATGTATAGCTTTTAAATCAAGACCAAAGCTGGTAAATAACATC  600

seq1  TTCTAGCCTCCTACACTGGTAAATGGACTTCATAATGATTATAAAGGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCCTCCTACACTGGTAAATGGACTTCATAATGATTATAAAGGACT  650

seq1  TTTTATTTTTTTAAAGACAAGCTCGTGTCGCTTAGCTCCTATTGAGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTTTAAAGACAAGCTCGTGTCGCTTAGCTCCTATTGAGGTAT  700

seq1  CTCTAAAGGGATGCAACTGTTCAGAGCCCCCATAAGACCTACTGAGGCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAGGGATGCAACTGTTCAGAGCCCCCATAAGACCTACTGAGGCGT  750

seq1  CGGTTTAGCCCCTACAGGTGTCAGCTTCTCCCTGTGCTCTGTTTTCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTAGCCCCTACAGGTGTCAGCTTCTCCCTGTGCTCTGTTTTCCTTC  800

seq1  CTTACTGTCCTATAGAAGTGTCCCCCAAGAACATACCCAGGGGATCCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGTCCTATAGAAGTGTCCCCCAAGAACATACCCAGGGGATCCAGT  850

seq1  CTAGGAGAGTCACCCTGTCATCTCTGATTCGCTCATGAAATGTCCTACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGAGTCACCCTGTCATCTCTGATTCGCTCATGAAATGTCCTACAG  900

seq1  GTGGCTCTTCTAATCTGCACCTTTACCTCCTGATCTTCCCTCCTCAGCCT  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTGGCTCTTCTAATCTGCACCTTTACCTCCTGATCTTTCCTCCTCAGCCT  950

seq1  GCCACCTGCTGGTGCATT-CCTGCTGGCTTCCAAGCTAAAGAGTCACCCA  999
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCCACCTGCTGGTGCATTCCCTGCTGGCTTCCAAGCTAAAGAGTCACCCA  1000

seq1  -TTTCTCA-GAAGAAAAATGT-CCCCACTA-CCTCCTGCTGTCTGTCATC  1045
       ||||||| |||||||||||| |||||||| |||||||||||||||||||
seq2  TTTTCTCAGGAAGAAAAATGTCCCCCACTACCCTCCTGCTGTCTGTCATC  1050

seq1  CTGAGGACCAAACTCAGGCCTAGAGCATGCTAGGCAAATGTTCCATCCCT  1095
      |||| |||| ||||||| | |||||||||||| |||||||||||||||||
seq2  CTGA-GACC-AACTCAGCCTTAGAGCATGCTA-GCAAATGTTCCATCCCT  1097

seq1  GA--GATACATCCCAGCCCCACCATCCTCTACTTATTAAACCACACTAGT  1143
      ||   |||||| |||||||||||||| ||||| |  |||| | |||||||
seq2  GAAGAATACAT-CCAGCCCCACCATCTTCTACCTTATAAA-CGCACTAGT  1145


seq1: chr16_82804079_82804583
seq2: B6Ng01-295D15.g_160_417

seq1  ACATTTCAAGATATAATTTCCTCCATC-ATCTAATTTAAATATTTTTCCT  49
      ||||||   |||||||        | | |||||||||||||||       
seq2  ACATTT---GATATAA--------AGCAATCTAATTTAAATAT-------  32

seq1  ACCTTTGTTGGAATTGCTAATGTTAATTTTAGAAAATAAATCTAAGTATA  99
         | ||||             |||  ||  ||||||| || |  ||| |
seq2  ---TGTGTT-------------TTAGATT--GAAAATACAT-TTTGTACA  63

seq1  ACATTTCTATTTTCTTTCTTTCTTACTCTTTGCCT-ATGCACCATTCTTC  148
      |    |||||| ||        | ||  ||| |||  ||||  | || ||
seq2  A----TCTATTCTC-------ATCACAGTTTCCCTCCTGCA--ACTCCTC  100

seq1  TGGGGTCAGAGCTTAT-TGCTTCTTT---CAATTGGATCTTGCTGATAGC  194
         | ||||| |   |   | ||| |   ||      |||     ||| |
seq2  CCAGATCAGATCCCCTCCACCTCTGTACCCACCCAACTCT-----ATACC  145

seq1  AGCAGGC-AATTAGGAAAATAAATGTAATTACGTGGGCCAGTAATCAATG  243
        |   | | ||||||||                   | ||||  |||  
seq2  TTCTCTCTATTTAGGAAA-------------------CAAGTAGACAA--  174

seq1  TAACAG-GTAAGAAACTCTGTACTCCATAATCTCTTGGGGGGAGTGCATC  292
       |||||  ||| |||      |||     ||        | ||  | | |
seq2  -AACAGCATAAAAAA------ACT-----AT--------GAGAAAGGAAC  204

seq1  AAGAAAGGAAAAGAAAGAGAAAATCACACACACACACACACACACACACA  342
      | ||||   ||| | | | | |  | ||||||||||||||||||||||||
seq2  AGGAAACATAAACATACACATATACGCACACACACACACACACACACACA  254

seq1  CACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  392
      ||||                                              
seq2  CACA----------------------------------------------  258

seq1  GAGAGATATTGAATGAAGCAAAGGGGTTCCAACAAGCAAGTTTCATCAGT  442
                                                        
seq2  --------------------------------------------------  258

seq1  TTCACATGTATACATGTATAATACAAGCGCGCGCGCACACACACACACAC  492
                                                        
seq2  --------------------------------------------------  258

seq1  ACACACACACACA  505
                   
seq2  -------------  258


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