BAC Information

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BAC

Clone NameB6Ng01-295E23
Chromosome16 (Build37)
Map Location 46,970,622 - 47,126,495
singlet/doubletdoublet
Overlap geneLOC628757
Upstream genePlcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
Downstream geneLOC628776, EG667741, EG639644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295E23.bB6Ng01-295E23.g
ACCGA091208GA091209
length1,1471,153
definitionB6Ng01-295E23.b B6Ng01-295E23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,970,622 - 46,971,765)(47,125,340 - 47,126,495)
sequence
ttctttagaatgtaagagaacagtcaaattcttgggtagccaatggattg
actcttgggctccagggccacctcagattcttgcagtgttaggcagccta
ttccacatttctaatagaattggctcatttttcatttaacatgaaaagag
agaattacaagacactgccaacttaagactagcttataaaatcaaactca
agtttttaataattatgttttcagggtacatattgttatgtgtccaagta
tgagaaagtctattttaaataagaggaggccccatggggtacagactttc
agtattagcaagacaacaaaaattctgttcccctggaaaaataaaagaca
attatataggaagctttggaggagagtctaactaacaagaggaagtctaa
aacctttttatttttgatttaacatagaatcccataactggacagacaca
aaccaattctgagactataatttcagttcatgctcgagttaccacatcct
accacctacatgttgcccatggattgaagccacagtgtttcaataactac
aaagtaaaacaggaaatataagcatactcatcatgaaatattggctaaga
agtttcatatctctctgtattttgtcatatttagttgaagttgttttcac
aaactaaaagaactctttttttaggaggctacctattaacatattttaag
ctgttaccatagacacatttctatgcacagatcctaaaatatggttttga
ttctctatgcatcagtatctaaagttgaacatgataggaatggtgtgaaa
aatgttgcaaatagagatataaaatatgtaaatacaaagctaaaatggca
aaaacgtatcttattatttggatacagttatactgataagaacaagtagg
cacatttgaacttgtggctgactatggctgttgggaaaccaggagaagtt
ttcttgctatggaaagaaggtgaaagaagtcatgaacctttcattgtgat
cataggaggattttaaaggggcaaaggtgagagataattttggtattcag
aacccaattatgaacttttaggatatactgcaccagtatggataagtccg
atgggctggaatatttggattattaataaaaaggctaagagaggaac
gaattcaaagaaaaacttagaaaataggatgtggcaaacagaactaaact
aaaggttcttggcacagaactaacaaaattaatgactatcaaaaagaaaa
agaaaattaacaaaggcaatgagattaaaaaaaataatgtgaatattttt
tttctacttgtacctatccatgtatatatttaagactttaaattaaaact
gactcgggttaagaaaagaaaatcaaagacctaccttccttattaaaata
ggtataaacatctgacaaaatctaaagcaactatatgacagagcatatat
gttatacctttatgcaacgatgaatgattttgagtggagaaaaacttaat
catgtgtaattttactaaaataaatctctccttggtgtataacatatatt
acatcattaggatccattctgaaaaactgttcatgatgttcttctaaggt
ggacatgtaacagaaatatgactccttgcagcacatctgcttaagccaga
caatgctaatgtggcaggtttaacttttgacttgtttatgaagctttctt
tcatggcatagatagttgcagagaatcaataagaaatgtagtactctgaa
tcagatagtaaatggtacttaaactgtgtcatttaacaacataaacctgg
ccttaagttgttgaatataactctagataaatagaatatggttcacatgt
ataaaataaatgttgaagagtttttcatcagtgattttaataataaatag
ctgaaagaaaaatgcataaagatagtgatttatgtacatttgaaaacaaa
tgtaagatataaaatgctacatttaaaaatgatgaaatgtagaattctaa
taaaatgaaattcaggtgtaggactcacacgtaaataaacagtacatttt
atgcccaaaataattttaataagtagaaacaatttttgaaagaaaatttc
ctttaaatgaaacatttgtattggcaacagcctagtgtaagtgtttacaa
atggatccctatttatttctattctaaaattatatagtctgaaacgtaaa
ctaggattagaaaaatggctcaattcagttaaggctctgctgcacaagaa
atgagaaccaaggtttgtattcttgggcactcatgcaaaggcaaggcaaa
gtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_46970622_46971765
seq2: B6Ng01-295E23.b_56_1202

seq1  TTCTTTAGAATGTAAGAGAACAGTCAAATTCTTGGGTAGCCAATGGATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGAATGTAAGAGAACAGTCAAATTCTTGGGTAGCCAATGGATTG  50

seq1  ACTCTTGGGCTCCAGGGCCACCTCAGATTCTTGCAGTGTTAGGCAGCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGGGCTCCAGGGCCACCTCAGATTCTTGCAGTGTTAGGCAGCCTA  100

seq1  TTCCACATTTCTAATAGAATTGGCTCATTTTTCATTTAACATGAAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATTTCTAATAGAATTGGCTCATTTTTCATTTAACATGAAAAGAG  150

seq1  AGAATTACAAGACACTGCCAACTTAAGACTAGCTTATAAAATCAAACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTACAAGACACTGCCAACTTAAGACTAGCTTATAAAATCAAACTCA  200

seq1  AGTTTTTAATAATTATGTTTTCAGGGTACATATTGTTATGTGTCCAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTAATAATTATGTTTTCAGGGTACATATTGTTATGTGTCCAAGTA  250

seq1  TGAGAAAGTCTATTTTAAATAAGAGGAGGCCCCATGGGGTACAGACTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGTCTATTTTAAATAAGAGGAGGCCCCATGGGGTACAGACTTTC  300

seq1  AGTATTAGCAAGACAACAAAAATTCTGTTCCCCTGGAAAAATAAAAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAGCAAGACAACAAAAATTCTGTTCCCCTGGAAAAATAAAAGACA  350

seq1  ATTATATAGGAAGCTTTGGAGGAGAGTCTAACTAACAAGAGGAAGTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATAGGAAGCTTTGGAGGAGAGTCTAACTAACAAGAGGAAGTCTAA  400

seq1  AACCTTTTTATTTTTGATTTAACATAGAATCCCATAACTGGACAGACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTTTATTTTTGATTTAACATAGAATCCCATAACTGGACAGACACA  450

seq1  AACCAATTCTGAGACTATAATTTCAGTTCATGCTCGAGTTACCACATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATTCTGAGACTATAATTTCAGTTCATGCTCGAGTTACCACATCCT  500

seq1  ACCACCTACATGTTGCCCATGGATTGAAGCCACAGTGTTTCAATAACTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTACATGTTGCCCATGGATTGAAGCCACAGTGTTTCAATAACTAC  550

seq1  AAAGTAAAACAGGAAATATAAGCATACTCATCATGAAATATTGGCTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAACAGGAAATATAAGCATACTCATCATGAAATATTGGCTAAGA  600

seq1  AGTTTCATATCTCTCTGTATTTTGTCATATTTAGTTGAAGTTGTTTTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCATATCTCTCTGTATTTTGTCATATTTAGTTGAAGTTGTTTTCAC  650

seq1  AAACTAAAAGAACTCTTTTTTTAGGAGGCTACCTATTAACATATTTTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAAAGAACTCTTTTTTTAGGAGGCTACCTATTAACATATTTTAAG  700

seq1  CTGTTACCATAGACACATTTCTATGCACAGATCCTAAAATATGGTTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACCATAGACACATTTCTATGCACAGATCCTAAAATATGGTTTTGA  750

seq1  TTCTCTATGCATCAGTATCTAAAGTTGAACATGATAGGAATGGTGTGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATGCATCAGTATCTAAAGTTGAACATGATAGGAATGGTGTGAAA  800

seq1  AATGTTGCAAATAGAGATATAAAATATGTAAATACAAAGCTAAAATGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGCAAATAGAGATATAAAATATGTAAATACAAAGCTAAAATGGCA  850

seq1  AAAACGTATCTTATTATTTGGATACAGTTATACTGATAAGAACAAGTAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTATCTTATTATTTGGATACAGTTATACTGATAAGAACAAGTAGG  900

seq1  CACATTTGAACTTGTGGCTGACTATGGCTGTTGGGAAACCAGGGAGAAGT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACATTTGAACTTGTGGCTGACTATGGCTGTTGGGAAACCA-GGAGAAGT  949

seq1  TTTCTTTGCTATGGAAAGAAGGTGAAAGAAGTCATGAACCTTTTCATTGT  1000
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTC-TTGCTATGGAAAGAAGGTGAAAGAAGTCATGAACC-TTTCATTGT  997

seq1  GATCATA-GAGGATTTTAAAGGGGCAAAGGT--GAGATAATTTTGGTA-T  1046
      ||||||| |||||||||||||||||||||||  ||||||||||||||| |
seq2  GATCATAGGAGGATTTTAAAGGGGCAAAGGTGAGAGATAATTTTGGTATT  1047

seq1  CAGAA-CCAATTATGAACTTTTAGGATATACTGCAACAGTAT-GATAGTA  1094
      ||||| ||||||||||||||||||||||||||||| |||||| ||||   
seq2  CAGAACCCAATTATGAACTTTTAGGATATACTGCACCAGTATGGATAAGT  1097

seq1  CAGATGGGCT-GAATATTTGATTTATTAATAAAAAGGCTAAAGAGAAGAA  1143
      | |||||||| |||||||||  ||||||||||||||||| |||||| |||
seq2  CCGATGGGCTGGAATATTTGGATTATTAATAAAAAGGCT-AAGAGAGGAA  1146

seq1  C  1144
      |
seq2  C  1147

seq1: chr16_47125340_47126495
seq2: B6Ng01-295E23.g_69_1221 (reverse)

seq1  AACTTTGCCTGGCTTTTGCATGAGTGCCAAAG-ATACAAACTTGGGTTCT  49
      |||||||||| || |||||||||||||| ||| |||||||| | ||||||
seq2  AACTTTGCCTTGCCTTTGCATGAGTGCCCAAGAATACAAACCTTGGTTCT  50

seq1  CA-TTCTTGTGCAGCAGAAGCCTT-ACTGAA-TGAGCCA-TTTTCTAATC  95
      || |||||||||||||| |||||| |||||| ||||||| ||||||||||
seq2  CATTTCTTGTGCAGCAG-AGCCTTAACTGAATTGAGCCATTTTTCTAATC  99

seq1  CTAGGTTTACGTTTTCAGACTATATAATTTTAGAATAAGAAATTAAATAG  145
      ||| ||||||| |||||||||||||||||||||||| ||||| |||||||
seq2  CTA-GTTTACG-TTTCAGACTATATAATTTTAGAAT-AGAAA-TAAATAG  145

seq1  GGATCCATTTGTAAAACACTTACACTAGGCTGTTGCCAATACAAATGTTT  195
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGATCCATTTGT-AAACACTTACACTAGGCTGTTGCCAATACAAATGTTT  194

seq1  CATTTTAAAGGAAATTTTCTTTCAAAAATTGTTTCTACTTATTAAAATTA  245
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-TTTAAAGGAAATTTTCTTTCAAAAATTGTTTCTACTTATTAAAATTA  243

seq1  TTTTGGGCATAAAATGTACTGTTTTATTTACGTGTGAGTCCTACACCTGA  295
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTTGGGCATAAAATGTACTG-TTTATTTACGTGTGAGTCCTACACCTGA  292

seq1  ATTTCATTTTATTAGAATTCTACATTTCATCATTTTTAAATGTAGCATTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTTTATTAGAATTCTACATTTCATCATTTTTAAATGTAGCATTT  342

seq1  TATATCTTACATTTGTTTTCAAATGTACATAAATCACTATCTTTATGCAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTACATTTGTTTTCAAATGTACATAAATCACTATCTTTATGCAT  392

seq1  TTTTCTTTCAGCTATTTATTATTAAAATCACTGATGAAAAACTCTTCAAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCAGCTATTTATTATTAAAATCACTGATGAAAAACTCTTCAAC  442

seq1  ATTTATTTTATACATGTGAACCATATTCTATTTATCTAGAGTTATATTCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTATACATGTGAACCATATTCTATTTATCTAGAGTTATATTCA  492

seq1  ACAACTTAAGGCCAGGTTTATGTTGTTAAATGACACAGTTTAAGTACCAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTAAGGCCAGGTTTATGTTGTTAAATGACACAGTTTAAGTACCAT  542

seq1  TTACTATCTGATTCAGAGTACTACATTTCTTATTGATTCTCTGCAACTAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATCTGATTCAGAGTACTACATTTCTTATTGATTCTCTGCAACTAT  592

seq1  CTATGCCATGAAAGAAAGCTTCATAAACAAGTCAAAAGTTAAACCTGCCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCATGAAAGAAAGCTTCATAAACAAGTCAAAAGTTAAACCTGCCA  642

seq1  CATTAGCATTGTCTGGCTTAAGCAGATGTGCTGCAAGGAGTCATATTTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCATTGTCTGGCTTAAGCAGATGTGCTGCAAGGAGTCATATTTCT  692

seq1  GTTACATGTCCACCTTAGAAGAACATCATGAACAGTTTTTCAGAATGGAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATGTCCACCTTAGAAGAACATCATGAACAGTTTTTCAGAATGGAT  742

seq1  CCTAATGATGTAATATATGTTATACACCAAGGAGAGATTTATTTTAGTAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGATGTAATATATGTTATACACCAAGGAGAGATTTATTTTAGTAA  792

seq1  AATTACACATGATTAAGTTTTTCTCCACTCAAAATCATTCATCGTTGCAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACACATGATTAAGTTTTTCTCCACTCAAAATCATTCATCGTTGCAT  842

seq1  AAAGGTATAACATATATGCTCTGTCATATAGTTGCTTTAGATTTTGTCAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTATAACATATATGCTCTGTCATATAGTTGCTTTAGATTTTGTCAG  892

seq1  ATGTTTATACCTATTTTAATAAGGAAGGTAGGTCTTTGATTTTCTTTTCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATACCTATTTTAATAAGGAAGGTAGGTCTTTGATTTTCTTTTCT  942

seq1  TAACCCGAGTCAGTTTTAATTTAAAGTCTTAAATATATACATGGATAGGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCGAGTCAGTTTTAATTTAAAGTCTTAAATATATACATGGATAGGT  992

seq1  ACAAGTAGAAAAAAAATATTCACATTATTTTTTTTAATCTCATTGCCTTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAGAAAAAAAATATTCACATTATTTTTTTTAATCTCATTGCCTTT  1042

seq1  GTTAATTTTCTTTTTCTTTTTGATAGTCATTAATTTTGTTAGTTCTGTGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTTCTTTTTCTTTTTGATAGTCATTAATTTTGTTAGTTCTGTGC  1092

seq1  CAAGAACCTTTAGTTTAGTTCTGTTTGCCACATCCTATTTTCTAAGTTTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACCTTTAGTTTAGTTCTGTTTGCCACATCCTATTTTCTAAGTTTT  1142

seq1  TCTTTGAATTC  1156
      |||||||||||
seq2  TCTTTGAATTC  1153