BAC Information

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BAC

Clone NameB6Ng01-295I04
Chromosome16 (Build37)
Map Location 5,280,530 - 5,375,898
singlet/doubletdoublet
Overlap genenone
Upstream geneAdcy9, EG620313, Srl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
Downstream geneLOC100042436, A2bp1, LOC100042445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295I04.bB6Ng01-295I04.g
ACCGA091356GA091357
length5151,124
definitionB6Ng01-295I04.b B6Ng01-295I04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,280,530 - 5,281,054)(5,374,774 - 5,375,898)
sequence
tcagaatttacatgtctctacctgtctccagtcctggggttacaggcact
cttatatacatttaaaatgtatttttatttttaattttttttttttgtga
gaactagagattcaaactcagatccattgaggcttgaagggcttggtcat
gggaatgtaactgggtgatgaaggaatgaagaaaggacagacagacagac
agacaggcaggcagacagacaggcaggcaggcaggcacgtgtgcacgcac
gcacacacgcacacacacacacacacacacacacacacacactcacagag
agacagagatagagagagacagagacagaaagagagagagagagagggag
ggagggagagagagagagagagagagagagagatagagagagataataag
cacttttagctgggatcaggtgggcagatcttctggagcaactcattttt
ttataagaactcttttttttttccctgagatgggttctctgtgtagacct
ggctgtctggagctc
gaattccaagattcagacaggagaggtttttagggagagaacagactcac
caggaccaaaagagcaagcccttctctctaaggacaaactggagggctct
gttcctccgccttcgcagccaggggagccagatccttggctgagccatat
ttgtcattggctgcctgatgtttgaacaagaacgctcctcagtttgtttt
ctcagaaaatgactgacagctacaatgttacttttaagtcatggatagag
agggaagaaacatctcaggagtgtggatgagtgctcccacatcttcccca
gggactgccagtacatttgcatttcagacctgcccaagcacaatacaaaa
cttctggaaggcatcagtctccataaattgatggacctatgagcaacccg
agtaccatctctgttctttgttccttcattctccagcacttacttttcct
aattaggggctctggggactggttctgtggctggtaacctgagctgggga
actaggggaggaggaaggacgcttcacattggctttgtcttctcttggaa
agtggctgtgagctgtagagctgtgattccaggagagatccctagcagcc
tgtactgtcctcccaggccagccttggcaggaaagtacagaggggaccag
ccaggaacagaaataaaggaagcccagggaacacggtaattctgcaagcc
ctggggaaaacacaatgaacaagatagatatattcctgctccaaagatgc
aggcactgagaacagggaaagggctcacagcgagcaactgcgtaagtcat
ttcctgcctgtgccgcaaagaccacaattcattagtacaaggaaatactt
catcttagaagataagaaaggtgtcatcaatttgagacctaatggaagga
gtcaccaggccagggggcaaaaatagattgctacacacacagagccagcc
tggaagctattgatatcccaaggttcctaaaggaactacaaaaggcttgt
aaactgagctgggattggaggatatttagcctttgtcccagtgctgtgat
aaatagcccaacaagccatgtcaggaaaactaatttattttgcttacgta
gcagtaccgtccggcctttgtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_5280530_5281054
seq2: B6Ng01-295I04.b_43_563

seq1  GAATTCTCAGAATTTACATGTCTCTACCTGTCTCCAGTCCTGGGGTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAATTTACATGTCTCTACCTGTCTCCAGTCCTGGGGTTACA  50

seq1  GGCACTCTTATATACATTTAAAATGTATTTTTATTTTTAATTTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCTTATATACATTTAAAATGTATTTTTATTTTTAATTTTTTTTTT  100

seq1  TTGTGAGAACTAGAGATTCAAACTCAGATCCATTGAGGCTTGAAGGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGAACTAGAGATTCAAACTCAGATCCATTGAGGCTTGAAGGGCTT  150

seq1  GGTCATGGGAATGTAACTGGGTGATGAAGGAATGAAGAAAGGACAGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGGGAATGTAACTGGGTGATGAAGGAATGAAGAAAGGACAGACAG  200

seq1  ACAGACAGACAGGCAGGCAGACAGACAGGCAGGCAGGCAGGCACGTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACAGGCAGGCAGACAGACAGGCAGGCAGGCAGGCACGTGTGC  250

seq1  ACGCACGCACACACGCACACACACACACACACACACACACACACACACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACGCACACACGCACACACACACACACACACACACACACACACACTC  300

seq1  ACAGAGAGACAGAGATAGAGAGAGACAGAGACAGAAAGAGAGAGAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGACAGAGATAGAGAGAGACAGAGACAGAAAGAGAGAGAGAGAG  350

seq1  AGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  AGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGAGAGAT  400

seq1  AAGAAGCAC-AAGAGCTGGGATCAGGTGGGCAGATCTATCTGGAGCAACA  449
      || ||||||    |||||||||||||||||||||||| ||||||||||| 
seq2  AATAAGCACTTTTAGCTGGGATCAGGTGGGCAGATCT-TCTGGAGCAAC-  448

seq1  TCATTTATTTATAAGAACTCTTTTTTTTTTCCCCGAGATAGGGTTTCTCT  499
      |||||| |||||||||||||||||||||||||| |||||  || ||||||
seq2  TCATTTTTTTATAAGAACTCTTTTTTTTTTCCCTGAGAT--GGGTTCTCT  496

seq1  GTGTAGTCCTGGCTGTCCTGGAGCTC  525
      |||||| ||||||||| |||||||||
seq2  GTGTAGACCTGGCTGT-CTGGAGCTC  521

seq1: chr16_5374774_5375898
seq2: B6Ng01-295I04.g_67_1190 (reverse)

seq1  CCCACAAA-GACGGACTGTAACCTGCTAACGTAAGCCAAATAAATAGTTT  49
      |||||||| | ||||| |||  ||||| |||||||| ||||||||   ||
seq2  CCCACAAAGGCCGGACGGTA--CTGCT-ACGTAAGCAAAATAAATTAGTT  47

seq1  TTCCTGACATTGCCTTTGTTGGGCTATTTTATCACAGCACTGGGAACAAA  99
      |||||||||| ||  ||||||||||| ||||||||||||||||||  || 
seq2  TTCCTGACATGGC--TTGTTGGGCTA-TTTATCACAGCACTGGGACAAAG  94

seq1  GCT-AATATCCTTCCATCCCCAGCCTCAGTTTAC-AGCCTTTTGTTAGTT  147
      ||| ||||||| ||||  ||||| |||||||||| ||||||||| |||||
seq2  GCTAAATATCC-TCCAATCCCAG-CTCAGTTTACAAGCCTTTTG-TAGTT  141

seq1  CC-TTAGGA--CCTGGGATATC-ATAGCTTCCAGGCTGGCTCTGTGTGTG  193
      || ||||||  | ||||||||| |||||||||||||||||||||||||||
seq2  CCTTTAGGAACCTTGGGATATCAATAGCTTCCAGGCTGGCTCTGTGTGTG  191

seq1  TAGCAATCTATTTTTGCCCCCTGGCCTGGTGACTCCTTCCCTTAGGTCTC  243
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGCAATCTATTTTTGCCCCCTGGCCTGGTGACTCCTTCCATTAGGTCTC  241

seq1  -AATTGATGACACCTTTCTTATCTTCTAAGATGAAGTATTTCCTTGTACT  292
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATGACACCTTTCTTATCTTCTAAGATGAAGTATTTCCTTGTACT  291

seq1  AATGAATTGTGGTCTTTGCGGCACAGGCAGGAAATGACTTACGCAGTTGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTGTGGTCTTTGCGGCACAGGCAGGAAATGACTTACGCAGTTGC  341

seq1  TCGCTGTGAGCCC-TTCCCTGTTCTCAGTGCCTGCATCTTTGGAGCAGGA  391
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCGCTGTGAGCCCTTTCCCTGTTCTCAGTGCCTGCATCTTTGGAGCAGGA  391

seq1  ATATATCTATCTTGTTCATTGTGTTTTCCCCAGGGCTTGCAGAATTACCG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTATCTTGTTCATTGTGTTTTCCCCAGGGCTTGCAGAATTACCG  441

seq1  TGTTCCCTGGGCTTCCTTTATTTCTGTTTCCTGGCTGGTCCCCTCTGTAC  491
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTTCCCTGGGCTTCCTTTATTTCTG-TTCCTGGCTGGTCCCCTCTGTAC  490

seq1  TTTCCTGCCAAGGCTGGCCTGGGAGGACAGTACAGGCTGCTAGGGATCTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCCAAGGCTGGCCTGGGAGGACAGTACAGGCTGCTAGGGATCTC  540

seq1  TCCTGGAATCACAGCTCTACAGCTCACAGCCACTTTCCAAGAGAAGACAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAATCACAGCTCTACAGCTCACAGCCACTTTCCAAGAGAAGACAA  590

seq1  AGCCAATGTGAAGCGTCCTTCCTCCTCCCCTAGTTCCCCAGCTCAGGTTA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATGTGAAGCGTCCTTCCTCCTCCCCTAGTTCCCCAGCTCAGGTTA  640

seq1  CCAGCCACAGAACCAGTCCCCAGAGCCCCTAATTAGGAAAAGTAAGTGCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCACAGAACCAGTCCCCAGAGCCCCTAATTAGGAAAAGTAAGTGCT  690

seq1  GGAGAATGAAGGAACAAAGAACAGAGATGGTACTCGGGTTGCTCATAGGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATGAAGGAACAAAGAACAGAGATGGTACTCGGGTTGCTCATAGGT  740

seq1  CCATCAATTTATGGAGACTGATGCCTTCCAGAAGTTTTGTATTGTGCTTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAATTTATGGAGACTGATGCCTTCCAGAAGTTTTGTATTGTGCTTG  790

seq1  GGCAGGTCTGAAATGCAAATGTACTGGCAGTCCCTGGGGAAGATGTGGGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTCTGAAATGCAAATGTACTGGCAGTCCCTGGGGAAGATGTGGGA  840

seq1  GCACTCATCCACACTCCTGAGATGTTTCTTCCCTCTCTATCCATGACTTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCATCCACACTCCTGAGATGTTTCTTCCCTCTCTATCCATGACTTA  890

seq1  AAAGTAACATTGTAGCTGTCAGTCATTTTCTGAGAAAACAAACTGAGGAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAACATTGTAGCTGTCAGTCATTTTCTGAGAAAACAAACTGAGGAG  940

seq1  CGTTCTTGTTCAAACATCAGGCAGCCAATGACAAATATGGCTCAGCCAAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTTGTTCAAACATCAGGCAGCCAATGACAAATATGGCTCAGCCAAG  990

seq1  GATCTGGCTCCCCTGGCTGCGAAGGCGGAGGAACAGAGCCCTCCAGTTTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGCTCCCCTGGCTGCGAAGGCGGAGGAACAGAGCCCTCCAGTTTG  1040

seq1  TCCTTAGAGAGAAGGGCTTGCTCTTTTGGTCCTGGTGAGTCTGTTCTCTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGAGAGAAGGGCTTGCTCTTTTGGTCCTGGTGAGTCTGTTCTCTC  1090

seq1  CCTAAAAACCTCTCCTGTCTGAATCTTGGAATTC  1125
      ||||||||||||||||||||||||||||||||||
seq2  CCTAAAAACCTCTCCTGTCTGAATCTTGGAATTC  1124