BAC Information

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BAC

Clone NameB6Ng01-296B10
Chromosome16 (Build37)
Map Location 63,020,186 - 63,154,949
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
Downstream geneEpha3, LOC100043540
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296B10.bB6Ng01-296B10.g
ACCGA091786GA091787
length1,0651,002
definitionB6Ng01-296B10.b B6Ng01-296B10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,020,186 - 63,021,236)(63,154,416 - 63,154,949)
sequence
gaattcatttgtgctgagaaatgtatgctgattttgtcttctgctactta
atttgtataaatttgtaacaattttatggcatatctacatttgcctaggt
atagatacaagtcatctgcaaacatggataattcaccgtaatccttctca
cttatgtgatgtctaatcacttttggcatctgtgtgttatgttaaatgag
ggtagtagatatggagaaattggtcctgtttgagattagaggataaagtc
tactttcttcagcataatagtgactgtgctttgttactttgaagtgtgtt
cctcctgtactttaggttttttttttttttgacatttttaaaagtcataa
ggggttttgaaactatccagtgctttttctatacttattgaaacaagcat
gtgtttttaccctcccttctgttggacatgctggatcacattctctcact
tgcaggtgttgcccactccttttgttgttgctgtttgtagaacatgtttt
aacatttgcaactgttaatattcaacaaacagaataattattttaagata
cacttcgttgttatgtctccctattcagttctgattttattaatttggat
actgcctccgtgccctctggtttgtctggctaaaggtttttctatcttgt
tgattttctcaaagaaccagcttctggttttgttggtttcttgtgtagtt
ccttttgtttctatttggttgatttcagccctcggtttgattatttcctg
tcatcctctcctcttggtgtatttgcttctttttgttctagggctttctg
gtgtgctgtcaagctgctagtgtaggatctccccaggttctttttggagg
cacttagagttgagttttcctcttactactgttttcattgtttcccataa
gttttggtatgatatatcttcattttcattaaatcctaagaaggctttta
atttctttctgttgttcagcttctatggtgtatgtgtgctttccaattgt
tttggttggtttaagacctgaacttaaggctggtggtgatcttgataggg
tgcataggaattatt

gaattcattttctactgtcagaatgagacttcataactcacacatgtgag
gaattgacaagaaaacctgcagcccaatcaatttctactcatcagaatct
tcttatccctggaaatgatataaacttcaaacccaatcacaatctaactc
atttcctgttactcaaagaaatgtctgttctcaatattttcattttaatg
gttttaacataaatgttcagtcaccgcagaaaactcaccctttcgattga
aagataaagtgtaaagcaactttaaaatagcaggaggaattccttttcat
gaaatgcattatttgacaatttcacatgtataaagtacatgctggccatt
catcttttctgtatcccacccaccttgattgacatgcatctcctcactac
aagtcaccttcatacattcatgttttctcagtgttgtgacctactgattt
taaaaagaatcattcaaggagattatcagtggattctaggggatatcaaa
agatgccaatagaccagccagaaggagaagggtcccatgaagccctctcc
tgtttatgatttactgttaagaggtacagttcatgaaggctcagtataga
caactccaactcttgcaagctcatggttgttaagcagcatcatggccaga
aaagagcatctcacagctcttttgtctatcttcaattcttcctttctttt
cacacctctttcataatttctccttagagatggtcatataaatatcccac
cgaagggctgggctatgacttggcccttacctttagcttcttgagcagcc
atgagggtctacactcactgctattctttgcaaacggtaccttttctgta
atggcagcatttatctttgggaataaacataaacatttagaaaggttggt
tgactctatgtcaatctaacaatacattctgccctagagtcatgaccttc
tcagccatgttctttgcatccaattcactgtaccagacatgaatacccct
cc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_63020186_63021236
seq2: B6Ng01-296B10.b_47_1102

seq1  GAATTCATTTGTGCTGAGAAATGTATGCTGATTTTGTCTTCTGCTACTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTGCTGAGAAATGTATGCTGATTTTGTCTTCTGCTACTTA  50

seq1  ATTTGTATAAATTTGTAACAATTTTATGGCATATCTACATTTGCCTAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATAAATTTGTAACAATTTTATGGCATATCTACATTTGCCTAGGT  100

seq1  ATAGATACAAGTCATCTGCAAACATGGATAATTCACCGTAATCCTTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATACAAGTCATCTGCAAACATGGATAATTCACCGTAATCCTTCTCA  150

seq1  CTTATGTGATGTCTAATCACTTTTGGCATCTGTGTGTTATGTTAAATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTGATGTCTAATCACTTTTGGCATCTGTGTGTTATGTTAAATGAG  200

seq1  GGTAGTAGATATGGAGAAATTGGTCCTGTTTGAGATTAGAGGATAAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTAGATATGGAGAAATTGGTCCTGTTTGAGATTAGAGGATAAAGTC  250

seq1  TACTTTCTTCAGCATAATAGTGACTGTGCTTTGTTACTTTGAAGTGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTTCAGCATAATAGTGACTGTGCTTTGTTACTTTGAAGTGTGTT  300

seq1  CCTCCTGTACTTTAGGTTTTTTTTTTTTTTGACATTTTTAAAAGTCATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGTACTTTAGGTTTTTTTTTTTTTTGACATTTTTAAAAGTCATAA  350

seq1  GGGGTTTTGAAACTATCCAGTGCTTTTTCTATACTTATTGAAACAAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTTGAAACTATCCAGTGCTTTTTCTATACTTATTGAAACAAGCAT  400

seq1  GTGTTTTTACCCTCCCTTCTGTTGGACATGCTGGATCACATTCTCTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTACCCTCCCTTCTGTTGGACATGCTGGATCACATTCTCTCACT  450

seq1  TGCAGGTGTTGCCCACTCCTTTTGTTGTTGCTGTTTGTAGAACATGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTGTTGCCCACTCCTTTTGTTGTTGCTGTTTGTAGAACATGTTTT  500

seq1  AACATTTGCAACTGTTAATATTCAACAAACAGAATAATTATTTTAAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGCAACTGTTAATATTCAACAAACAGAATAATTATTTTAAGATA  550

seq1  CACTTCGTTGTTATGTCTCCCTATTCAGTTCTGATTTTATTAATTTGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCGTTGTTATGTCTCCCTATTCAGTTCTGATTTTATTAATTTGGAT  600

seq1  ACTGCCTCCGTGCCCTCTGGTTTGTCTGGCTAAAGGTTTTTCTATCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTCCGTGCCCTCTGGTTTGTCTGGCTAAAGGTTTTTCTATCTTGT  650

seq1  TGATTTTCTCAAAGAACCAGCTTCTGGTTTTGTTGGTTTCTTGTGTAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCTCAAAGAACCAGCTTCTGGTTTTGTTGGTTTCTTGTGTAGTT  700

seq1  CCTTTTGTTTCTATTTGGTTGATTTCAGCCCTCGGTTTGATTATTTCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTTTCTATTTGGTTGATTTCAGCCCTCGGTTTGATTATTTCCTG  750

seq1  TCATCCTCTCCTCTTGGTGTATTTGCTTCTTTTTGTTCTAGGGCTTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTCTCCTCTTGGTGTATTTGCTTCTTTTTGTTCTAGGGCTTTCTG  800

seq1  GTGTGCTGTCAAGCTGCTAGTGTAGGATCTCCCCAGGTTCTTTTTGGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTGTCAAGCTGCTAGTGTAGGATCTCCCCAGGTTCTTTTTGGAGG  850

seq1  CACTTAGAGTTGAGTTTTCCTCTTACTACTGTTTTCATTGTTTCCCATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGAGTTGAGTTTTCCTCTTACTACTGTTTTCATTGTTTCCCATAA  900

seq1  GTTTTGGTATGATATATCTTCATTTTCATTAAATCCTAAGAAGGCTTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTATGATATATCTTCATTTTCATTAAATCCTAAGAAGGCTTTTA  950

seq1  ATTTCTTTCTGTTGTTCAGCTTCTAT-GTGTATGTGTGCTTTCC-ATTGT  998
      |||||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  ATTTCTTTCTGTTGTTCAGCTTCTATGGTGTATGTGTGCTTTCCAATTGT  1000

seq1  TTTTGTTGGTTTTAAGACCTG-ACTT-AGGCT-GTGGTGATC-TGATAGG  1044
      ||| ||||| ||||||||||| |||| ||||| ||||||||| |||||||
seq2  TTTGGTTGG-TTTAAGACCTGAACTTAAGGCTGGTGGTGATCTTGATAGG  1049

seq1  GTGCATA  1051
      |||||||
seq2  GTGCATA  1056


seq1: chr16_63154416_63154949
seq2: B6Ng01-296B10.g_66_599 (reverse)

seq1  GACCCTTCTCCTTCTGGCTGGTCTATTGGCATCTTTTGATATCCCCTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTCTCCTTCTGGCTGGTCTATTGGCATCTTTTGATATCCCCTAGA  50

seq1  ATCCACTGATAATCTCCTTGAATGATTCTTTTTAAAATCAGTAGGTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTGATAATCTCCTTGAATGATTCTTTTTAAAATCAGTAGGTCACA  100

seq1  ACACTGAGAAAACATGAATGTATGAAGGTGACTTGTAGTGAGGAGATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGAAAACATGAATGTATGAAGGTGACTTGTAGTGAGGAGATGCA  150

seq1  TGTCAATCAAGGTGGGTGGGATACAGAAAAGATGAATGGCCAGCATGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATCAAGGTGGGTGGGATACAGAAAAGATGAATGGCCAGCATGTAC  200

seq1  TTTATACATGTGAAATTGTCAAATAATGCATTTCATGAAAAGGAATTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACATGTGAAATTGTCAAATAATGCATTTCATGAAAAGGAATTCCT  250

seq1  CCTGCTATTTTAAAGTTGCTTTACACTTTATCTTTCAATCGAAAGGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTATTTTAAAGTTGCTTTACACTTTATCTTTCAATCGAAAGGGTGA  300

seq1  GTTTTCTGCGGTGACTGAACATTTATGTTAAAACCATTAAAATGAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGCGGTGACTGAACATTTATGTTAAAACCATTAAAATGAAAATA  350

seq1  TTGAGAACAGACATTTCTTTGAGTAACAGGAAATGAGTTAGATTGTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAACAGACATTTCTTTGAGTAACAGGAAATGAGTTAGATTGTGATT  400

seq1  GGGTTTGAAGTTTATATCATTTCCAGGGATAAGAAGATTCTGATGAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGAAGTTTATATCATTTCCAGGGATAAGAAGATTCTGATGAGTAG  450

seq1  AAATTGATTGGGCTGCAGGTTTTCTTGTCAATTCCTCACATGTGTGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATTGGGCTGCAGGTTTTCTTGTCAATTCCTCACATGTGTGAGTT  500

seq1  ATGAAGTCTCATTCTGACAGTAGAAAATGAATTC  534
      ||||||||||||||||||||||||||||||||||
seq2  ATGAAGTCTCATTCTGACAGTAGAAAATGAATTC  534


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