BAC Information

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BAC

Clone NameB6Ng01-296E13
Chromosome16 (Build37)
Map Location 62,107,079 - 62,208,603
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043524, LOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296E13.bB6Ng01-296E13.g
ACCGA091932GA091933
length1,1171,146
definitionB6Ng01-296E13.b B6Ng01-296E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,207,462 - 62,208,603)(62,107,079 - 62,108,227)
sequence
gaattctcaacactttattttatgttccatgaattcttaagtttactctg
tgaatctgtactaattaaacttttctacaatattaaggaaatatttgaat
acaatactaggaaatataaagttgttattaaaatattccattttgaaaac
aacttaccaactgagaggtaaaaatagaacaatatacagaatgttcaaca
ggataatatacagaatgcttcaataaatatgttaaaataatctctatata
tcagtgtcagtaaataaacaataacaacttaaatattcaaagtttggcct
ttcatgtgtaagtagttctgaagctggggaagtatgttaagtagtctctg
gacagttcagtctaaggagaatgggaagaagctagaaactgtccgtggtg
ctgaaacaagggctgacacataagcattttcttctctgtagtctttaata
cttctttatactacatccatttcatgatatattttttgagctcagatatc
atatgttataattacacaaacccactgcatattttctaagattatccccc
tttctgtcacactgtataaaataagaccttaattaatatgttacagttat
tcagtattgaataccataaagtacttaaaacccttagatgttttaagatt
attgctgatacaggaaagtaaccattaattaataaaattccaaaatttat
atacattcctactatagtaaagaagcaattggtcaactgtcatagatgag
tgcaaatacaatcatctggtcatcaagttattttatagtgcttataacag
cagattttgactaatattatagtgaatatactgttgatgcttgctatgaa
aaactaaaatttatcagtaactgactgaattgataagctcatacccaaag
tgcgagtctatattgtagagatgatttttctattaacgctaatatgctat
atttacgctataagcagagatagttcatctgtacattaattattaaactt
atccaaatgtgactatttgtaatatggatatacactctttatttgttcgt
ttcgagacaggtttctctgtgttagcctgctgttctggaactactttgta
gaacagacttgcctcga

gaattctggcatgacaaattgatttgtgatttatatatgaaaattatttt
tctatataaattattattaatgtccagaatttctttcttagttttctgcc
ttggctatttcagcaggaggtgaagatatgaacactttaatattagctct
tttgaaagtcatttccttgtcctcttttaaatctttctcagtctccctct
agtaacttgagagtccaattccttctggtagaatcacttgcatattttaa
tgtagaaaaaatatattttacaaatattattttcaaaatataaaaagttg
gctactactatagctaactaggctatatgtgtgtgcctagtatgatttaa
tatttctagctatccaacaaacattaatattcaaatatggaaataaaaga
agccattccctggaactcctaaaatcttgaagctttcaatactgttaaaa
gtttaaagtaaaagcaaacacatttagtattttcataagctgtatacagt
aatgttttttatgttctagaaatatttcaattgtatttactgagaaccat
aaaccacaagaaaattgaatatttgcaaagggccgtgaacattattaaga
aactttcaattaaaattgtgatctgctgaacaggaacagaaagatacaga
actgtgtctcaaaactgtgagaaatattacttattagcatagtaaattca
cttcctgaaacattactcataatattttcaaaatgtaccacacatatgta
tatactttttgcatactagcaatgctctgctataaatataagataataat
aacagtaactcaattatataatgtgtgtccctctgctctcatgaatcctc
agcctattcagtccacaagtagtaggagcagagagagtaggagcaaaggg
tagagaaataacaagtggttcagaagccctgtgagtacctacagtgaatg
accatgctgagactgcttgtcagtaggcaggtcaagtgatagaagactta
taaagttttggggcactgaaggtcaggaatcaggatgggtcataggtcat
tgactggagggctaggtattctggcatattcctccacctcatatgagaga
ttcagaatccttaggtactaactgacagattgtcaggggtagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_62207462_62208603
seq2: B6Ng01-296E13.b_47_1163 (reverse)

seq1  TCGAGGCCAGTCTGGTCTACAAAGTAAGTTCCAGGACAGCCAGGGCTACA  50
      ||||||| |||||| |||||||||| |||||||| |||| ||||   |||
seq2  TCGAGGCAAGTCTGTTCTACAAAGT-AGTTCCAGAACAG-CAGGCTAACA  48

seq1  CAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAGTTGTA  100
      |||||||| ||||||||||||   | || ||| ||| |        ||||
seq2  CAGAGAAA-CCTGTCTCGAAA---CGAACAAATAAAGA-------GTGTA  87

seq1  TATTCATATTTACAAATTAGTCACCATTTTGGATTAAAGTTTTAATAATT  150
      ||| |||| ||||||| |||||||   |||||||  ||| |||||||| |
seq2  TATCCATA-TTACAAA-TAGTCAC--ATTTGGAT--AAG-TTTAATAA-T  129

seq1  TAATGTACAGATGAACTATTCTCTGCTTATTAGCCTTAAATATAGCATAT  200
      |||||||||||||||||| |||||||||| ||| | ||||||||||||||
seq2  TAATGTACAGATGAACTA-TCTCTGCTTA-TAG-CGTAAATATAGCATAT  176

seq1  TAGCGTTAATAGAAAAATCATCTCTTACAATATAGACTCGCACTTTGGGT  250
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAGCGTTAATAGAAAAATCATCTC-TACAATATAGACTCGCACTTTGGGT  225

seq1  ATGAGCTTATCAATTCAGTCAGTTACTGATAAATTTTAGTTTTTCATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTTATCAATTCAGTCAGTTACTGATAAATTTTAGTTTTTCATAGC  275

seq1  AAGCATCAACAGTATATTCACTATAATATTAGTCAAAATCTGCTGTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCAACAGTATATTCACTATAATATTAGTCAAAATCTGCTGTTATA  325

seq1  AGCACTATAAAATAACTTGATGACCAGATGATTGTATTTGCACTCATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTATAAAATAACTTGATGACCAGATGATTGTATTTGCACTCATCTA  375

seq1  TGACAGTTGACCAATTGCTTCTTTACTATAGTAGGAATGTATATAAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTTGACCAATTGCTTCTTTACTATAGTAGGAATGTATATAAATTT  425

seq1  TGGAATTTTATTAATTAATGGTTACTTTCCTGTATCAGCAATAATCTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTTATTAATTAATGGTTACTTTCCTGTATCAGCAATAATCTTAA  475

seq1  AACATCTAAGGGTTTTAAGTACTTTATGGTATTCAATACTGAATAACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTAAGGGTTTTAAGTACTTTATGGTATTCAATACTGAATAACTGT  525

seq1  AACATATTAATTAAGGTCTTATTTTATACAGTGTGACAGAAAGGGGGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATTAATTAAGGTCTTATTTTATACAGTGTGACAGAAAGGGGGATA  575

seq1  ATCTTAGAAAATATGCAGTGGGTTTGTGTAATTATAACATATGATATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGAAAATATGCAGTGGGTTTGTGTAATTATAACATATGATATCTG  625

seq1  AGCTCAAAAAATATATCATGAAATGGATGTAGTATAAAGAAGTATTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAAAAATATATCATGAAATGGATGTAGTATAAAGAAGTATTAAAG  675

seq1  ACTACAGAGAAGAAAATGCTTATGTGTCAGCCCTTGTTTCAGCACCACGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGAGAAGAAAATGCTTATGTGTCAGCCCTTGTTTCAGCACCACGG  725

seq1  ACAGTTTCTAGCTTCTTCCCATTCTCCTTAGACTGAACTGTCCAGAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCTAGCTTCTTCCCATTCTCCTTAGACTGAACTGTCCAGAGACT  775

seq1  ACTTAACATACTTCCCCAGCTTCAGAACTACTTACACATGAAAGGCCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACATACTTCCCCAGCTTCAGAACTACTTACACATGAAAGGCCAAA  825

seq1  CTTTGAATATTTAAGTTGTTATTGTTTATTTACTGACACTGATATATAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATATTTAAGTTGTTATTGTTTATTTACTGACACTGATATATAGA  875

seq1  GATTATTTTAACATATTTATTGAAGCATTCTGTATATTATCCTGTTGAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTTAACATATTTATTGAAGCATTCTGTATATTATCCTGTTGAAC  925

seq1  ATTCTGTATATTGTTCTATTTTTACCTCTCAGTTGGTAAGTTGTTTTCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTATATTGTTCTATTTTTACCTCTCAGTTGGTAAGTTGTTTTCAA  975

seq1  AATGGAATATTTTAATAACAACTTTATATTTCCTAGTATTGTATTCAAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATATTTTAATAACAACTTTATATTTCCTAGTATTGTATTCAAAT  1025

seq1  ATTTCCTTAATATTGTAGAAAAGTTTAATTAGTACAGATTCACAGAGTAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTAATATTGTAGAAAAGTTTAATTAGTACAGATTCACAGAGTAA  1075

seq1  ACTTAAGAATTCATGGAACATAAAATAAAGTGTTGAGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGAATTCATGGAACATAAAATAAAGTGTTGAGAATTC  1117


seq1: chr16_62107079_62108227
seq2: B6Ng01-296E13.g_70_1215

seq1  GAATTCTGGCATGACAAATTGATTTGTGATTTATATATGAAAATTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCATGACAAATTGATTTGTGATTTATATATGAAAATTATTTT  50

seq1  TCTATATAAATTATTATTAATGTCCAGAATTTCTTTCTTAGTTTTCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATAAATTATTATTAATGTCCAGAATTTCTTTCTTAGTTTTCTGCC  100

seq1  TTGGCTATTTCAGCAGGAGGTGAAGATATGAACACTTTAATATTAGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTATTTCAGCAGGAGGTGAAGATATGAACACTTTAATATTAGCTCT  150

seq1  TTTGAAAGTCATTTCCTTGTCCTCTTTTAAATCTTTCTCAGTCTCCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGTCATTTCCTTGTCCTCTTTTAAATCTTTCTCAGTCTCCCTCT  200

seq1  AGTAACTTGAGAGTCCAATTCCTTCTGGTAGAATCACTTGCATATTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTTGAGAGTCCAATTCCTTCTGGTAGAATCACTTGCATATTTTAA  250

seq1  TGTAGAAAAAATATATTTTACAAATATTATTTTCAAAATATAAAAAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAAAAATATATTTTACAAATATTATTTTCAAAATATAAAAAGTTG  300

seq1  GCTACTACTATAGCTAACTAGGCTATATGTGTGTGCCTAGTATGATTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTACTATAGCTAACTAGGCTATATGTGTGTGCCTAGTATGATTTAA  350

seq1  TATTTCTAGCTATCCAACAAACATTAATATTCAAATATGGAAATAAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAGCTATCCAACAAACATTAATATTCAAATATGGAAATAAAAGA  400

seq1  AGCCATTCCCTGGAACTCCTAAAATCTTGAAGCTTTCAATACTGTTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTCCCTGGAACTCCTAAAATCTTGAAGCTTTCAATACTGTTAAAA  450

seq1  GTTTAAAGTAAAAGCAAACACATTTAGTATTTTCATAAGCTGTATACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAGTAAAAGCAAACACATTTAGTATTTTCATAAGCTGTATACAGT  500

seq1  AATGTTTTTTATGTTCTAGAAATATTTCAATTGTATTTACTGAGAACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTTTATGTTCTAGAAATATTTCAATTGTATTTACTGAGAACCAT  550

seq1  AAACCACAAGAAAATTGAATATTTGCAAAGGGCCGTGAACATTATTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACAAGAAAATTGAATATTTGCAAAGGGCCGTGAACATTATTAAGA  600

seq1  AACTTTCAATTAAAATTGTGATCTGCTGAACAGGAACAGAAAGATACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCAATTAAAATTGTGATCTGCTGAACAGGAACAGAAAGATACAGA  650

seq1  ACTGTGTCTCAAAACTGTGAGAAATATTACTTATTAGCATAGTAAATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCTCAAAACTGTGAGAAATATTACTTATTAGCATAGTAAATTCA  700

seq1  CTTCCTGAAACATTACTCATAATATTTTCAAAATGTACCACACATATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGAAACATTACTCATAATATTTTCAAAATGTACCACACATATGTA  750

seq1  TATAC-TTTTGCATACTAGCAATGCTCTGCTATAAATATAAGATAATAAT  799
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTTTGCATACTAGCAATGCTCTGCTATAAATATAAGATAATAAT  800

seq1  AACAGTAACTCAATTATATAATGTGTGTCCCTCTGCTCTCATGAATCCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAACTCAATTATATAATGTGTGTCCCTCTGCTCTCATGAATCCTC  850

seq1  AGCCTATTCAGTCCACAAGTAGTAGGAGCAGAGAGAGTAGGAGCAAA-GG  898
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGCCTATTCAGTCCACAAGTAGTAGGAGCAGAGAGAGTAGGAGCAAAGGG  900

seq1  TAGAGAAATAACAAGTGGTTCAGAAGCCCTGTGAGTACCTACAGTGAATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAATAACAAGTGGTTCAGAAGCCCTGTGAGTACCTACAGTGAATG  950

seq1  ACCATGCTGAGACTGCTTGTCAGTAGGCAGGTCAAGTGATAGAAGACTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCTGAGACTGCTTGTCAGTAGGCAGGTCAAGTGATAGAAGACTTA  1000

seq1  TAAAGTTTTGGGGCACTGAAGGTCAGGAAATCCAGGAT-GGTCATAGGTC  1047
      |||||||||||||||||||||||||||||   |||||| |||||||||||
seq2  TAAAGTTTTGGGGCACTGAAGGTCAGGAA--TCAGGATGGGTCATAGGTC  1048

seq1  ATTGACTGGAGGCTTAGGGTATCTGGCATAT--CTC--ACTCATATGAAG  1093
      ||||||||||||  ||||   ||||||||||  |||   ||||||||   
seq2  ATTGACTGGAGGGCTAGGTATTCTGGCATATTCCTCCACCTCATATG---  1095

seq1  AAGAATTTCAGAAATCCCTA-GTACTAACTGAACAGGATTTGTCAGGGGA  1142
       |||  ||||| ||||| || |||||||||| ||||   |||||||||| 
seq2  -AGAGATTCAG-AATCCTTAGGTACTAACTG-ACAG--ATTGTCAGGGG-  1139

seq1  AAGAAAA  1149
       ||||||
seq2  TAGAAAA  1146


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