BAC Information

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BAC

Clone NameB6Ng01-299K13
Chromosome5 (Build37)16 (Build37)
Map Location 79,472,103 - 79,473,25377,187,058 - 77,187,567
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299K13.bB6Ng01-299K13.g
ACCGA094437GA094438
length1,152984
definitionB6Ng01-299K13.b B6Ng01-299K13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,472,103 - 79,473,253)(77,187,058 - 77,187,567)
sequence
gaattcattaattcctgggtttcaaaattgtatcctgccatgacagaaag
aaatttcacactcttctttgtcagtagtaatcccaattcatgagctgtgt
ccttcccacagccttgtggaggctaaatagaccataagtgtttgccacag
ttggtcttctgtctacctaggtggagtcttctgtcttgccacacctgcta
aatattaaactttgagccttgatcagaaacttttgtcttggcttttccct
tctctcgcctgcctgtcccttttcattcccagcctccctttcaggtaccc
agttcatccatagctgctggacagctacaatgtgctatcacactatgaaa
ttaaacacacacacacacacgcacacgcacacgcacacgcacacgcacac
gcacacgcacacgcacacgcacacgcacacgcacacgcacacacacacac
acacacacagacacttagaaattttttaaatatattaaacttcctaagta
tatagtgatactgatgctacagttgtattaatggattctgcagtattgtc
ctctctgagagcttagaggtatattttgacatttcagttttgagaaacct
accaaaaacttaatagttgccttattgtagagaacaaggatttcccagaa
acgtgggcataggctagaaaggtgaacagaatgggcccggaacaattttt
attgcatatcaaaaatttattattcaaattaattagagattttgaagtca
aaatttacaatttttcgattagttcattaaaaatttgaggccaggcatgg
tggcacaagcctttaatcccagcacttgtgaggcagaggcaggtggattt
cttagttcaagggcagcctgatctacagagtaagttccaggacagccagg
gctacacagagaaaccctgtctcaaaacactcccgcaaccccccaaaatt
tttgaagtccactattcctgtgtatcaatagatattactatttttgaaat
ctaatggcttggtatgattttatttaaataaataataggttagtaccagt
atcataatgtacctcaataagaaataaatgaatgaacttattcaatttgc
ctctttatgttttccaataaatatcttaaacaataaatttgtaacatttt
tt
gaattcagtgataaatcagtaaaactgtaggaaaagctactggaaagtca
gattttaaaaaatagaattatattctatacttactatgttacttaatgaa
ctgtatttcctagtagaagtcactacatttctaactttaatttttataac
ttaagtaccagtgtatgtatataattttctagtattgattttctttctat
atattataaaaaagttctttgaacttcaatttccttgttattgttacatt
tttaactatgtattttcacctgtgcctatcttcctcctttatatatttta
cactttattttcatgatcatttaatgtaatatttctgtttaagtagaatt
cacaaaaatgatccttctattcttatctataataaaattgttcatttctc
cctctatattcttttttgcctttctctttccttttattaaaacttgtttt
tatgtttttcatttaacattttttctttttttgtcatctctgttcttttt
ttttttaattaggtattttcctcatttacattttaaatgctatcccaaaa
gtccaccataccccccccaaacccctaaccacccacttcccctttttggc
cctggggttcccctgtactagggcatataaaatttgcaagtccaatgggc
ctctctttgcagtgatggccgactaggccatcttttgatacatatgcagc
tagagtcaagagctccggggtactggttagttcatattgttgttccacct
atagggttgcagttccctttagctctttgggtaatttctctagctcctcc
attgggggccttgtgacctatccaatagctgactgtgatcatccacttct
gtgtttgctaggccccagcatagtctcacaagagacagctatatctgggc
cctttcagcaaaatcttgctagtgtatgcaatgtgtcagcgtttggaagc
tgattatggatggatccctggatatgaaatcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_79472103_79473253
seq2: B6Ng01-299K13.b_47_1198

seq1  GAATTCATTAATTCCTGGGTTTCAAAATTGTATCCTGCCATGACAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATTCCTGGGTTTCAAAATTGTATCCTGCCATGACAGAAAG  50

seq1  AAATTTCACACTCTTCTTTGTCAGTAGTAATCCCAATTCATGAGCTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCACACTCTTCTTTGTCAGTAGTAATCCCAATTCATGAGCTGTGT  100

seq1  CCTTCCCACAGCCTTGTGGAGGCTAAATAGACCATAAGTGTTTGCCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCACAGCCTTGTGGAGGCTAAATAGACCATAAGTGTTTGCCACAG  150

seq1  TTGGTCTTCTGTCTACCTAGGTGGAGTCTTCTGTCTTGCCACACCTGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTCTGTCTACCTAGGTGGAGTCTTCTGTCTTGCCACACCTGCTA  200

seq1  AATATTAAACTTTGAGCCTTGATCAGAAACTTTTGTCTTGGCTTTTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAACTTTGAGCCTTGATCAGAAACTTTTGTCTTGGCTTTTCCCT  250

seq1  TCTCTCGCCTGCCTGTCCCTTTTCATTCCCAGCCTCCCTTTCAGGTACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCGCCTGCCTGTCCCTTTTCATTCCCAGCCTCCCTTTCAGGTACCC  300

seq1  AGTTCATCCATAGCTGCTGGACAGCTACAATGTGCTATCACACTATGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATCCATAGCTGCTGGACAGCTACAATGTGCTATCACACTATGAAA  350

seq1  TTAAACACACACACACACACGCACACGCACACGCACACGCACACGCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACACACACACACACACGCACACGCACACGCACACGCACACGCACAC  400

seq1  GCACACGCACACGCACACGCACACGCACACGCACACGCACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACGCACACGCACACGCACACGCACACGCACACGCACACACACACAC  450

seq1  ACACACACAGACACTTAGAAATTTTTTAAATATATTAAACTTCCTAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAGACACTTAGAAATTTTTTAAATATATTAAACTTCCTAAGTA  500

seq1  TATAGTGATACTGATGCTACAGTTGTATTAATGGATTCTGCAGTATTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGATACTGATGCTACAGTTGTATTAATGGATTCTGCAGTATTGTC  550

seq1  CTCTCTGAGAGCTTAGAGGTATATTTTGACATTTCAGTTTTGAGAAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGAGAGCTTAGAGGTATATTTTGACATTTCAGTTTTGAGAAACCT  600

seq1  ACCAAAAACTTAATAGTTGCCTTATTGTAGAGAACAAGGATTTCCCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAACTTAATAGTTGCCTTATTGTAGAGAACAAGGATTTCCCAGAA  650

seq1  ACGTGGGCATAGGCTAGAAAGGTGAACAGAATGGGCCCGGAACAATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGGCATAGGCTAGAAAGGTGAACAGAATGGGCCCGGAACAATTTTT  700

seq1  ATTGCATATCAAAAATTTATTATTCAAATTAATTAGAGATTTTGAAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATATCAAAAATTTATTATTCAAATTAATTAGAGATTTTGAAGTCA  750

seq1  AAATTTACAATTTTTCGATTAGTTCATTAAAAATTTGAGGCCAGGCATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACAATTTTTCGATTAGTTCATTAAAAATTTGAGGCCAGGCATGG  800

seq1  TGGCACAAGCCTTTAATCCCAGCACTTGTGAGGCAGAGGCAGGTGGATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAAGCCTTTAATCCCAGCACTTGTGAGGCAGAGGCAGGTGGATTT  850

seq1  CTTAGTTCAAGGGCAGCCTGATCTACAGAGTAAGTTCCAGGACAGCCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTCAAGGGCAGCCTGATCTACAGAGTAAGTTCCAGGACAGCCAGG  900

seq1  GCTACACAGAGAAACCCTGTCTCAAAACACTCCCGCAACCCCCCAAAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAGAGAAACCCTGTCTCAAAACACTCCCGCAACCCCCCAAAATT  950

seq1  TTTGAAGTCCACTATTCCTGTGTATCAATAGATATTACTA-TTTTGAAAT  999
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTGAAGTCCACTATTCCTGTGTATCAATAGATATTACTATTTTTGAAAT  1000

seq1  CTTAATGGCTTGGTTATTGATTTTATTTAAATAAATAATAGGTTTAGTAC  1049
      | ||||||||||||   ||||||||||||||||||||||||| |||||||
seq2  C-TAATGGCTTGGT--ATGATTTTATTTAAATAAATAATAGG-TTAGTAC  1046

seq1  CAGTATCATAATGTTACTCAAT---AGATAATTGATTAAATTTATTCATT  1096
      ||||||||||||||  ||||||   | |||| ||| | || ||||||| |
seq2  CAGTATCATAATGTACCTCAATAAGAAATAAATGAATGAACTTATTCAAT  1096

seq1  TTGCTCTTTTATGTTTTC--ATTAATATCTATAACAATAAATTTTGTAAC  1144
      ||||   |||||||||||  || |||||||  ||||||||| ||||||||
seq2  TTGCCTCTTTATGTTTTCCAATAAATATCTTAAACAATAAA-TTTGTAAC  1145

seq1  ATTTTTT  1151
      |||||||
seq2  ATTTTTT  1152

seq1: chr16_77187058_77187567
seq2: B6Ng01-299K13.g_532_1042

seq1  ACATTTCTTTTTTTTTT--------TTTTTTTTCCATTTTTTATTAGGTA  42
      |||||| || |||||||        | || |||   ||||| ||||||||
seq2  ACATTTTTTCTTTTTTTGTCATCTCTGTTCTTTTTTTTTTTAATTAGGTA  50

seq1  TTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCTTACCCAC  92
      |||  |||||||||||||  |||||||| |||||||||| || |||||  
seq2  TTTTCCTCATTTACATTTTAAATGCTATCCCAAAAGTCCACCATACCC--  98

seq1  CCACCCCCACTCCCCTACCCACCCACTCCCCCCCTTTGGCCCTGGCGTTC  142
         ||||||  |||||| ||||||||| ||||  ||||||||||| ||||
seq2  ---CCCCCAAACCCCTAACCACCCACTTCCCCTTTTTGGCCCTGGGGTTC  145

seq1  CCCTGTACCGGGGCACACAAAGTCTGCGTGTCCAATGGGCCTCTCTTTCC  192
      ||||||||  ||||| | ||| | |||  ||||||||||||||||||| |
seq2  CCCTGTACTAGGGCATATAAAATTTGCAAGTCCAATGGGCCTCTCTTTGC  195

seq1  AGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAG  245

seq1  AGCTCAGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGA  292
      ||||| |||||||||||||||||||| |||||||||||||||||||||| 
seq2  AGCTCCGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGC  295

seq1  AGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCC  342
      || |||||||||||| ||||||| |||||||||||||||||||||| |||
seq2  AGTTCCCTTTAGCTCTTTGGGTAATTTCTCTAGCTCCTCCATTGGGGGCC  345

seq1  CTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTA  392
       ||||| | ||||| ||||||||||||| |||||||||||||||||||||
seq2  TTGTGACCTATCCAATAGCTGACTGTGATCATCCACTTCTGTGTTTGCTA  395

seq1  GGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCAGTA  442
      |||||| |||||||||||||||||||||||| ||||||| |||||||| |
seq2  GGCCCCAGCATAGTCTCACAAGAGACAGCTATATCTGGGCCCTTTCAGCA  445

seq1  AAATCTTGCTAGTGTATGCAATGGTGTCAGCATTTGGAAGCTGATTATGG  492
      |||||||||||||||||||||| |||||||| |||||||||||||||| |
seq2  AAATCTTGCTAGTGTATGCAAT-GTGTCAGCGTTTGGAAGCTGATTAT-G  493

seq1  GGTGGATCCCTGGATATG  510
      | ||||||||||||||||
seq2  GATGGATCCCTGGATATG  511