BAC Information

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BAC

Clone NameB6Ng01-300I19
Chromosome16 (Build37)
Map Location 48,282,857 - 48,455,066
singlet/doubletdoublet
Overlap geneDppa4, Dppa2, EG433023, Morc1
Upstream geneLOC628776, EG667741, EG639644, EG637273
Downstream geneTrat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061, EG216818, LOC628903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300I19.bB6Ng01-300I19.g
ACCGA095099GA095100
length1,1111,128
definitionB6Ng01-300I19.b B6Ng01-300I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,454,016 - 48,455,066)(48,282,857 - 48,284,002)
sequence
gaattcatacctaacactgcttttgtgaccaagaaacagagactagatag
cccagggacctaaggtaaaaccaaataatactgatttaaaaaaaggaatg
atatccttctatattcatagattggtacctaatccatcatcagagggctt
cctcctgcagcagatgggaacaaatggagagacccacaggaagccattac
acaccttgaaacacatagctctaaaggagatgtctctatcaaaggcctcc
cctcgtagctcagggaacaccacagaaaaggaggcagaaagagttgggga
gacaggacatcaggagaacaaagctctttaaaacaactgaacaaagctca
tatgaactcagagactgaggtctatatgggtctgtaccaggtcctccaca
tcatatatactatagctttctgtttagtacttttatgggacttctggtaa
aaacaagtgggtttctaattcttgtcccatttcttggggctcttttattt
tttgatggcttgtcttgtttaacttcaatacaatgttttttttaatattc
ttatatttgtttttttaataaaataaaggataaacaaacaaacacaaagt
gtcaaacttggcctttggctatgtcttgtgactcctgctccaaggcatca
ttaaccaaaagtgaccaaactgttcacaaaactgtttgagcacaatatga
gcacaaatgtgagtttcaatgaaattaaaaagggaaatgaattacacttc
tcttggtggggagaacagcataggggagaagaatgagaagtttatagtca
aaatgcctgtttctaaattctggattaaccactgaacagtggtgtgacct
taagagctccactccaaagacataaaagtaggcagagactagttgagaag
aaaggagtgcagagcagtaaaagaggacacgagatagtaatggaggagta
aatgattttaaaaccatatatacacacataaactaacaaaccctcacttt
cctaatctatccaatagaattcatagcataataaaaatagcaaaataaca
tttactattattttttggtgagtgcttcacaatagagttccttctggaga
gctgggcagtg
gaattccagccctggggaagctagaagatcagaaattcaagccctggcca
ggtgtggtggggtacaccttgaatcctagcagtcaggaggatgagacagg
aagacctcagtatgctgcaggtccgtggagacttcaaaaaaggagggttg
gatggggaagaattaaaagagttgtaattttatgggctgggattgtagct
cagtggtagattgattggtgcacagaaacaaagcccagggtgagccctga
aaccaccaaaacaatgcaacccccaccccctgccatctcatggaaaagga
tttctggagcaactgggttgttttcattcctgttcaggatgctaattcca
ttagataaatttgcagtcttttcagaattctctaggaacttcactttccc
ttagcaatatttaggttctttctttctttctttctttctttctttctttc
tttctttctttctttctttctttctttctttctttctttctttcttcctt
ccttccttccttccttccttcccttttttttttttttttcttttttctaa
gatagagtctcactatgtagactaggctgaccaggagctcagagagatcc
acctgcctctgcatctctaatgctgggattaaaggtgtgtgctgccacgc
ccagcaataattacagttttaaatatcccagatctacagtttgccaggag
cagggggtagcagctcacacctctaaatcgcagtattccggaggttgaga
cagtacaatatacaaagcgcatttctggccaggcaaagaaatgataaact
ctgcctcaaaacaaaacaaaacaaaacaaacaaaaaaaaattcgaggaaa
ccagcctaataattaaaccacacaaaaggggattttattaaaatcagcca
caaaaggagattttagcatcacaattttgttgagggtgggaccagaaggg
gaggggaacggaagaggctcaagacaacaggagtagaggagatttgaaaa
gccgctgagtcagagtctttggcagctgggaagaaacttcttcgagattc
atctatcctcaggaatggagactgctggagacagaagggtaaactgtttt
acaagtggcttccaatgaggccctcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_48454016_48455066
seq2: B6Ng01-300I19.b_111_1156 (reverse)

seq1  CACTGCCCAGCTCT-CAG-AGGACTTCTAATTGTGAAGCACTCAC--ATA  46
      |||||||||||||| ||| ||||  ||| ||||||||||||||||  | |
seq2  CACTGCCCAGCTCTCCAGAAGGAACTCT-ATTGTGAAGCACTCACCAAAA  49

seq1  AATATTAGTAAAATGTTTATTTTTGCTTATTTTATTATGCTTATGAATTC  96
      |||| |||| |||||||   |||||||  ||||||||||| |||||||||
seq2  AATAATAGT-AAATGTT--ATTTTGCTATTTTTATTATGC-TATGAATTC  95

seq1  TATTGGATAGATTAGGAAAGTGAGGGTTTTGTTAGTTTTATGTGTGTATA  146
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  TATTGGATAGATTAGGAAAGTGAGGG-TTTGTTAG-TTTATGTGTGTATA  143

seq1  TATGGTTTTAAAATCATTTTACTCCTCCATTACTATCTCGTGTCCTCTTT  196
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  TATGGTTTTAAAATCA-TTTACTCCTCCATTACTATCTCGTGTCCTC-TT  191

seq1  TTACTGCTCTGCACTCCTTTCTTCTCAACTAGTCTCTGCCTACTTTTATG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTCTGCACTCCTTTCTTCTCAACTAGTCTCTGCCTACTTTTATG  241

seq1  TCTTTGGAGTGGAGCTCTTAAGGTCACACCACTGTTCAGTGGTTAATCCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGAGTGGAGCTCTTAAGGTCACACCACTGTTCAGTGGTTAATCCA  291

seq1  GAATTTAGAAACAGGCATTTTGACTATAAACTTCTCATTCTTCTCCCCTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAGAAACAGGCATTTTGACTATAAACTTCTCATTCTTCTCCCCTA  341

seq1  TGCTGTTCTCCCCACCAAGAGAAGTGTAATTCATTTCCCTTTTTAATTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCTCCCCACCAAGAGAAGTGTAATTCATTTCCCTTTTTAATTTC  391

seq1  ATTGAAACTCACATTTGTGCTCATATTGTGCTCAAACAGTTTTGTGAACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAACTCACATTTGTGCTCATATTGTGCTCAAACAGTTTTGTGAACA  441

seq1  GTTTGGTCACTTTTGGTTAATGATGCCTTGGAGCAGGAGTCACAAGACAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTCACTTTTGGTTAATGATGCCTTGGAGCAGGAGTCACAAGACAT  491

seq1  AGCCAAAGGCCAAGTTTGACACTTTGTGTTTGTTTGTTTATCCTTTATTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGGCCAAGTTTGACACTTTGTGTTTGTTTGTTTATCCTTTATTT  541

seq1  TATTAAAAAAACAAATATAAGAATATTAAAAAAAACATTGTATTGAAGTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAAAACAAATATAAGAATATTAAAAAAAACATTGTATTGAAGTT  591

seq1  AAACAAGACAAGCCATCAAAAAATAAAAGAGCCCCAAGAAATGGGACAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGACAAGCCATCAAAAAATAAAAGAGCCCCAAGAAATGGGACAAG  641

seq1  AATTAGAAACCCACTTGTTTTTACCAGAAGTCCCATAAAAGTACTAAACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAAACCCACTTGTTTTTACCAGAAGTCCCATAAAAGTACTAAACA  691

seq1  GAAAGCTATAGTATATATGATGTGGAGGACCTGGTACAGACCCATATAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTATAGTATATATGATGTGGAGGACCTGGTACAGACCCATATAGA  741

seq1  CCTCAGTCTCTGAGTTCATATGAGCTTTGTTCAGTTGTTTTAAAGAGCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTCTCTGAGTTCATATGAGCTTTGTTCAGTTGTTTTAAAGAGCTT  791

seq1  TGTTCTCCTGATGTCCTGTCTCCCCAACTCTTTCTGCCTCCTTTTCTGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCCTGATGTCCTGTCTCCCCAACTCTTTCTGCCTCCTTTTCTGTG  841

seq1  GTGTTCCCTGAGCTACGAGGGGAGGCCTTTGATAGAGACATCTCCTTTAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCCTGAGCTACGAGGGGAGGCCTTTGATAGAGACATCTCCTTTAG  891

seq1  AGCTATGTGTTTCAAGGTGTGTAATGGCTTCCTGTGGGTCTCTCCATTTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGTGTTTCAAGGTGTGTAATGGCTTCCTGTGGGTCTCTCCATTTG  941

seq1  TTCCCATCTGCTGCAGGAGGAAGCCCTCTGATGATGGATTAGGTACCAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATCTGCTGCAGGAGGAAGCCCTCTGATGATGGATTAGGTACCAAT  991

seq1  CTATGAATATAGAAGGATATCATTCCTTTTTTTAAATCAGTATTATTTGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAATATAGAAGGATATCATTCCTTTTTTTAAATCAGTATTATTTGG  1041

seq1  TTTTA  1051
      |||||
seq2  TTTTA  1046

seq1: chr16_48282857_48284002
seq2: B6Ng01-300I19.g_66_1193

seq1  GAATTCCAGCCCTGGGGAAGCTAGAAGATCAGAAATTCAAGCCCTGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCCTGGGGAAGCTAGAAGATCAGAAATTCAAGCCCTGGCCA  50

seq1  GGTGTGGTGGGGTACACCTTGAATCCTAGCAGTCAGGAGGATGAGACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGTGGGGTACACCTTGAATCCTAGCAGTCAGGAGGATGAGACAGG  100

seq1  AAGACCTCAGTATGCTGCAGGTCCGTGGAGACTTCAAAAAAGGAGGGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTCAGTATGCTGCAGGTCCGTGGAGACTTCAAAAAAGGAGGGTTG  150

seq1  GATGGGGAAGAATTAAAAGAGTTGTAATTTTATGGGCTGGGATTGTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGAAGAATTAAAAGAGTTGTAATTTTATGGGCTGGGATTGTAGCT  200

seq1  CAGTGGTAGATTGATTGGTGCACAGAAACAAAGCCCAGGGTGAGCCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTAGATTGATTGGTGCACAGAAACAAAGCCCAGGGTGAGCCCTGA  250

seq1  AACCACCAAAACAATGCAACCCCCACCCCCTGCCATCTCATGGAAAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCAAAACAATGCAACCCCCACCCCCTGCCATCTCATGGAAAAGGA  300

seq1  TTTCTGGAGCAACTGGGTTGTTTTCATTCCTGTTCAGGATGCTAATTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGAGCAACTGGGTTGTTTTCATTCCTGTTCAGGATGCTAATTCCA  350

seq1  TTAGATAAATTTGCAGTCTTTTCAGAATTCTCTAGGAACTTCACTTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATAAATTTGCAGTCTTTTCAGAATTCTCTAGGAACTTCACTTTCCC  400

seq1  TTAGCAATATTTAGGTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAATATTTAGGTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  450

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTT  500

seq1  CCTTCCTTCCTTCCTTCCTTCCCTTTTTTTTTTTTTTTTCTTTTTTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTCCTTCCTTCCCTTTTTTTTTTTTTTTTCTTTTTTCTAA  550

seq1  GATAGAGTCTCACTATGTAGACTAGGCTGACCAGGAGCTCAGAGAGATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGTCTCACTATGTAGACTAGGCTGACCAGGAGCTCAGAGAGATCC  600

seq1  ACCTGCCTCTGCATCTCTAATGCTGGGATTAAAGGTGTGTGCTGCCACGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTCTGCATCTCTAATGCTGGGATTAAAGGTGTGTGCTGCCACGC  650

seq1  CCAGCAATAATTACAGTTTTAAATATCCCAGATCTACAG-TTGCCAGGAG  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCAGCAATAATTACAGTTTTAAATATCCCAGATCTACAGTTTGCCAGGAG  700

seq1  CAGGGGGTAGCAGCTCACACCTCTAAATCGCAGTATTCCGGAGGTTGAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGTAGCAGCTCACACCTCTAAATCGCAGTATTCCGGAGGTTGAGA  750

seq1  CAGTACAATATACAAAGCGCATTTCTGGCCAGGCAAAGAAATGATAAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAATATACAAAGCGCATTTCTGGCCAGGCAAAGAAATGATAAACT  800

seq1  CTGCCTCAAAAACAAAACAAAACAAAACAAACAAAAAAAAATTCGAGGAA  849
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTC-AAAACAAAACAAAACAAAACAAACAAAAAAAAATTCGAGGAA  849

seq1  ACAAGCCTAATAATTAAACCACACAAAAGGGGATTTTATTAAAATCAGCC  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCTAATAATTAAACCACACAAAAGGGGATTTTATTAAAATCAGCC  899

seq1  ACAAAAGGAGATTTTAGCATCACAATTTTGTTGAGGGTGGGACCAGAAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGGAGATTTTAGCATCACAATTTTGTTGAGGGTGGGACCAGAAGG  949

seq1  GGAGGGGAACGGAAGAGGGCCTCAAGACAACAGGAAGTAGGAGGAGATTT  999
      ||||||||||||||||||  |||||||||||||| |||| ||||||| ||
seq2  GGAGGGGAACGGAAGAGG--CTCAAGACAACAGG-AGTA-GAGGAGA-TT  994

seq1  TGAAAAGCCGGCTGAGGTCAGAGGTCTTTTGGAAGCTGGG-AGAACTTTC  1048
      ||||||||| ||||| |||||| ||| ||||| ||||||| ||||  |||
seq2  TGAAAAGCC-GCTGA-GTCAGA-GTC-TTTGGCAGCTGGGAAGAAACTTC  1040

seq1  TTTCGGAGGATTCATCTATTCTCAAG-ATGGAGACTGCTGGAGACAAGAA  1097
       ||||   ||||||||||| |||| | |||||||||||||||||| ||||
seq2  -TTCG--AGATTCATCTATCCTCAGGAATGGAGACTGCTGGAGAC-AGAA  1086

seq1  GGTGAGAACTGTTTTTACAATTTGGCTTTCCAAATGAGGGCCCCTCATT  1146
      || |  ||||| ||||||||  ||||||  | |||||||  ||||||||
seq2  GG-GTAAACTG-TTTTACAA-GTGGCTT--CCAATGAGG--CCCTCATT  1128