BAC Information

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BAC

Clone NameB6Ng01-301C18
Chromosome16 (Build37)
Map Location 77,948,551 - 78,110,826
singlet/doubletdoublet
Overlap geneLOC435483
Upstream geneUsp25, 2810055G20Rik
Downstream geneLOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605, 4930570E03Rik, Chodl, Prss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301C18.bB6Ng01-301C18.g
ACCGA095555GA095556
length1,171529
definitionB6Ng01-301C18.b B6Ng01-301C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,109,645 - 78,110,826)(77,948,551 - 77,949,067)
sequence
gaattcatgcaaaagaaatgggagcagatcttcagctaatattagctgaa
gaagtggagtagctctcaaaatgtttgaaaaataaatacaaaattgttct
aagacttttctgggggagatgtgaacaaatatttagtcaccttagatcag
gcactgatgagagaacccattctacctaagcccagcttgctaaactaatg
aggtgactgggtttatatacagggattctgttgattccaaggtagctgtg
gtactgaaaatcttggaccagcatgggtcatgaaagttgcatctccggag
ctccctgcccagctcgcaggctgctcctccgatagggagtgggtctagct
tcctcagaaatagtccactgctttcacagccttggcaggtcacagagctt
tgagtgctttgtgatcctgctggaactcactgcttttcttagtcttacaa
gctccctcctccctccaggatctacatttcagttcagaagaaaacaaaac
aaaatgtctctaagctgtattttgcacaaattactgacttctcctaacac
cattatattaaaggttgaaaatggctaccgcatgattatctcattcgttg
ttaatggatatggcaatctttgcccaagaaggtcatttctctgctccggt
ttttgtttgtctctcatggctagatgaccgagagttttcagtgttatgat
acattaccatcattattgactttgatattgaaattctctgcagttggtgt
gtcattcatttcagcatggtcaccgtggtgtaattgttcaggccactcca
ggtccttctgttattatgtgttactgaattatgtacatagaattatatac
atagaattggatggacctggagggcatcatccctgagtgaggtaacacaa
tcacaaaagaactcaaatgatatgtactcactgataagtgggatattagc
ccagaaaacttagtataccctgagatataagataacatttgcaaaacaca
tgaaactgaagaagaatgaagaccaaagtgtgacacttgtccttcttaga
atggggacaaaacaccatggtagaagttacagagacaagttggagctgaa
caaggatgaaccatctaggacctgcatatccaggatcattccatatagtc
ctcaacgatgacaccagttgc

gaattctctttaaatacatttttggacactcatattaaacaccataaatt
atgtgttctgtctcctataattttatgaacaataattctcaaaaataagg
ccactttaaaaggaatacatttaaaacatcccacaatggtacatgtgtgt
gttctactgaaaaagtatcttttattcagcagatataactgtcctctcag
aaacttactgctgaataaactcactttctgaactctggctgcctgattca
accaactgtctagcccaaactcctctacaatctgactgaatcaaactggc
ttcccctgtattctaacttaattgctgtgcttggcctcaaatagttaact
ctgacaatctgtcctaatcttctggccccttcttattctctggctgattt
tgtcttcacctgtaaaattacctgagtcaaaactctccctttctttcttt
agcgctctctctctctctctctctctctctctctctctctctctctctct
ctctctctctgtgtgtgtgttgctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_78109645_78110826
seq2: B6Ng01-301C18.b_47_1217 (reverse)

seq1  GCAA-TGGTGTCATCGTTTGGAGG-CTAATTATGGGATGGATCCCTGGAT  48
      |||| |||||||||||||  |||| |||  ||||| || ||| |||||||
seq2  GCAACTGGTGTCATCGTT--GAGGACTA--TATGGAAT-GAT-CCTGGAT  44

seq1  ATGGCAGTCTCTAGATGGTCCATTCTTTTGTCTCAGCTCCAAACTTTGTC  98
      || ||||   ||||||||| ||| ||| |   ||||||||||   |||||
seq2  AT-GCAGGTCCTAGATGGTTCATCCTTGT---TCAGCTCCAA--CTTGTC  88

seq1  TCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAATTCTAAGAAGGGACAA  148
      ||||||||| || |||| ||||||||| |||| |||||||||| |||| |
seq2  TCTGTAACTTCTACCAT-GGTGTTTTG-TCCCCATTCTAAGAA-GGAC-A  134

seq1  AGTGTCCACACTTTGGTCTTCATTCTTCTTCAGTTTCATGTGTTTTGCAA  198
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGT-CACACTTTGGTCTTCATTCTTCTTCAGTTTCATGTGTTTTGCAA  183

seq1  ATTGTATCTTATATCTCA-GGTATACTAAG-TTTCTGGGCTAATAT-CCA  245
      ||  |||||||||||||| ||||||||||| ||||||||||||||| |||
seq2  ATGTTATCTTATATCTCAGGGTATACTAAGTTTTCTGGGCTAATATCCCA  233

seq1  CTTATCAGTGAGTACATATCATTTGAGTTCTTTTGTGATTGTGTTACCTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCAGTGAGTACATATCATTTGAGTTCTTTTGTGATTGTGTTACCTC  283

seq1  ACTCA-GGATGATGCCCTCCAGGTCCATCCAATTCTATGTATATAATTCT  344
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGGATGATGCCCTCCAGGTCCATCCAATTCTATGTATATAATTCT  333

seq1  ATGTACATAATTCAGTAACACATAATAACAGAAGGACCTGGAGTGGCCTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATAATTCAGTAACACATAATAACAGAAGGACCTGGAGTGGCCTG  383

seq1  AACAATTACACCACGGTGACCATGCTGAAATGAATGACACACCAACTGCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTACACCACGGTGACCATGCTGAAATGAATGACACACCAACTGCA  433

seq1  GAGAATTTCAATATCAAAGTCAATAATGATGGTAATGTATCATAACACTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTCAATATCAAAGTCAATAATGATGGTAATGTATCATAACACTG  483

seq1  AAAACTCTCGGTCATCTAGCCATGAGAGACAAACAAAAACCGGAGCAGAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTCGGTCATCTAGCCATGAGAGACAAACAAAAACCGGAGCAGAG  533

seq1  AAATGACCTTCTTGGGCAAAGATTGCCATATCCATTAACAACGAATGAGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACCTTCTTGGGCAAAGATTGCCATATCCATTAACAACGAATGAGA  583

seq1  TAATCATGCGGTAGCCATTTTCAACCTTTAATATAATGGTGTTAGGAGAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATGCGGTAGCCATTTTCAACCTTTAATATAATGGTGTTAGGAGAA  633

seq1  GTCAGTAATTTGTGCAAAATACAGCTTAGAGACATTTTGTTTTGTTTTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTAATTTGTGCAAAATACAGCTTAGAGACATTTTGTTTTGTTTTCT  683

seq1  TCTGAACTGAAATGTAGATCCTGGAGGGAGGAGGGAGCTTGTAAGACTAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACTGAAATGTAGATCCTGGAGGGAGGAGGGAGCTTGTAAGACTAA  733

seq1  GAAAAGCAGTGAGTTCCAGCAGGATCACAAAGCACTCAAAGCTCTGTGAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCAGTGAGTTCCAGCAGGATCACAAAGCACTCAAAGCTCTGTGAC  783

seq1  CTGCCAAGGCTGTGAAAGCAGTGGACTATTTCTGAGGAAGCTAGACCCAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGGCTGTGAAAGCAGTGGACTATTTCTGAGGAAGCTAGACCCAC  833

seq1  TCCCTATCGGAGGAGCAGCCTGCGAGCTGGGCAGGGAGCTCCGGAGATGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATCGGAGGAGCAGCCTGCGAGCTGGGCAGGGAGCTCCGGAGATGC  883

seq1  AACTTTCATGACCCATGCTGGTCCAAGATTTTCAGTACCACAGCTACCTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCATGACCCATGCTGGTCCAAGATTTTCAGTACCACAGCTACCTT  933

seq1  GGAATCAACAGAATCCCTGTATATAAACCCAGTCACCTCATTAGTTTAGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAACAGAATCCCTGTATATAAACCCAGTCACCTCATTAGTTTAGC  983

seq1  AAGCTGGGCTTAGGTAGAATGGGTTCTCTCATCAGTGCCTGATCTAAGGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGGCTTAGGTAGAATGGGTTCTCTCATCAGTGCCTGATCTAAGGT  1033

seq1  GACTAAATATTTGTTCACATCTCCCCCAGAAAAGTCTTAGAACAATTTTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAATATTTGTTCACATCTCCCCCAGAAAAGTCTTAGAACAATTTTG  1083

seq1  TATTTATTTTTCAAACATTTTGAGAGCTACTCCACTTCTTCAGCTAATAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTTTCAAACATTTTGAGAGCTACTCCACTTCTTCAGCTAATAT  1133

seq1  TAGCTGAAGATCTGCTCCCATTTCTTTTGCATGAATTC  1182
      ||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAAGATCTGCTCCCATTTCTTTTGCATGAATTC  1171


seq1: chr16_77948551_77949067
seq2: B6Ng01-301C18.g_68_596

seq1  GAATTCTCTTTAAATACATTTTTGGACACTCATATTAAACACCATGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAATTCTCTTTAAATACATTTTTGGACACTCATATTAAACACCATAAATT  50

seq1  ATGTGTTCTGTCTCCTATAATTTTATGAACAATAATTCTCAAAAATAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTCTGTCTCCTATAATTTTATGAACAATAATTCTCAAAAATAAGG  100

seq1  CCACTTTAAAAGGAATACATTTAAAACATCCCACAATGGTACATGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTAAAAGGAATACATTTAAAACATCCCACAATGGTACATGTGTGT  150

seq1  GTTCTACTGAAAAAGTATCTTTTATTCAGCAGATATAACTGTCCTCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACTGAAAAAGTATCTTTTATTCAGCAGATATAACTGTCCTCTCAG  200

seq1  AAACTTACTGCTGAATAAACTCACTTTCTGAACTCTGGCTGCCTGATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTACTGCTGAATAAACTCACTTTCTGAACTCTGGCTGCCTGATTCA  250

seq1  ACCAACTGTCTAGCCCAAACTCCTCTACAATCTGACTGAATCAAACTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTGTCTAGCCCAAACTCCTCTACAATCTGACTGAATCAAACTGGC  300

seq1  TTCCCCTGTATTCTAACTTAATTGCTGTGCTTGGCCTCAAATAGTTAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTGTATTCTAACTTAATTGCTGTGCTTGGCCTCAAATAGTTAACT  350

seq1  CTGACAATCTGTCCTAATCTTCTGGCCCCTTCTTATTCTCTGGCTGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAATCTGTCCTAATCTTCTGGCCCCTTCTTATTCTCTGGCTGATTT  400

seq1  TGTCTTCACCTGTAAAATTACCTGAGTCAAAACTCTCCCTTTCTTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCACCTGTAAAATTACCTGAGTCAAAACTCTCCCTTTCTTTCTTT  450

seq1  AGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  500

seq1  CTCTCTCTCT------------CTCTCTC  517
      ||||||||||            |||||||
seq2  CTCTCTCTCTGTGTGTGTGTTGCTCTCTC  529


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