BAC Information

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BAC

Clone NameB6Ng01-302B05
Chromosome16 (Build37)
Map Location 44,227,576 - 44,365,869
singlet/doubletdoublet
Overlap geneSidt1, Ccdc52
Upstream geneLOC667484, Zbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608
Downstream geneWdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302B05.bB6Ng01-302B05.g
ACCGA096225GA096226
length1,1121,050
definitionB6Ng01-302B05.b B6Ng01-302B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,227,576 - 44,228,676)(44,364,822 - 44,365,869)
sequence
gaattctctctcttcccgcccagttctcttcaagtctgcttgttttgcat
ctgaagtagtatattgccatagtttcacctatctgaaaaaaatcccatga
cactttgccattggacttgtgttcctaagtgttattccttaagtaaatca
gttatgatggagagtaaactgttcaaagaggctgcacatctgtatattcc
ttacaagaagtaaacttagaatttcacacatagaagggtagtcaatgagg
attcagtctgtgtcctcaactgtgttcacagtggaaaaggaggcgaacgt
ttaggtatgtgagataagggttggtatggggctggaatgatgcctttagc
tgatgagagcagagaaccccatggcaagtggctcacaccgtttgtgactc
agcttcagggaaaagatcttacagtctcttctggcctcttcaggcagatg
cacccatatccccagcatatacacatgtaattaaaagttaaatcttttaa
agaaagttggaagaccactaatggtgacacacacacctttaatcccagca
tgtgggaggcagaagcaggcggatccctgaatttgaggctggccagagct
acaccgtgagaccctgtctttaaaagaaggaagttgggccgggcgtggtg
gcgcacgcctttaatcccagcacttaggaggcagaggcaggcgaatttct
gagttcgaggccagcctggtctacagagtgagttccaggacagtcagggc
tacacagagaaaccctgtctcgaaaaaaataaataaataaaaatgtatat
aaaacaacataaacaggttatttttgtgtaaaacttacataagctttata
tttcttggcttttgttttttgaggcagagtctcgttgtacagccctcact
gaccttggaaccagctctcctgcccagtctcaagttgtgaccacaagtat
ataccattaataagctggccaaaatgatataaagtgtaaagctgagtgta
gctctgtgtaagtgtgcaatgtgtgaagccaagggccccaagtttgattt
attctatggaatgcctacaaatcagtggaattgttttatagaatgggagt
taaaaaccatac
gaattcctctaatctctcctgagctgtgtttccgggagatatgcaagctg
tgtgtggactgaacgcttacctgtgcgcttacgaggaacatcagcaaaca
gacctttggctgcagccatcagatgatcggacttttccagcacatcctgt
gtcaggtattgatcagagagaatctacacatgtgtgaagaaaaatactga
ttagagaaaaatacgcttacttatcaaattactaagaaaaaagaataagg
gaaggcaccaaacatgacattttgaaagtttaattttcaatccttattga
ttgtggttgctaaatttcctcttaaccatgggccatgaccatcctaaaac
cctccaatgacaatatacttagataacagtaggtgagactactacagata
ttagtagcttgaaaaaatacatattacattgtgatctggtacacacagat
gtacacacaaaaatacacacacatgatcagatatatacacacatacaaat
acatactttttaaaagtaagactgtaattcatatagccttgcctcatgag
aataactatatttaagttttattccattctagttttaagtgatagttgta
ctccactaacttgattttataacccattaaataaagtatacagttgaaaa
acacataccaaagataagaatctttgagccataaactcaaggtgtttcca
ccactgaagtattctgataatccactaacagacctatgacttagaaaaac
acagtatagctttttaggattaaacaaagccatgcttaggtatttataaa
caagttggtttttttattatggagagatcgttaaactaaacaccattaca
gtcgtgcctctgactatgtactttctattgaaggactttaatgtacaaaa
aaaacaaaaaagatatgggacaaggcttgattattgttctatttaaaatt
ctaatatatatatatatatattatatatattaaatttctatatatatata
catatattgtgtgtgtatatatacatatacatatattgcgtatctatata

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_44227576_44228676
seq2: B6Ng01-302B05.b_45_1156

seq1  GAATTCTCTCTCTTCCCGCCCAGTTCTCTTCAAGTCTGCTTGTTTTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCTTCCCGCCCAGTTCTCTTCAAGTCTGCTTGTTTTGCAT  50

seq1  CTGAAGTAGTATATTGCCATAGTTTCACCTATCTGAAAAAAATCCCATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTAGTATATTGCCATAGTTTCACCTATCTGAAAAAAATCCCATGA  100

seq1  CACTTTGCCATTGGACTTGTGTTCCTAAGTGTTATTCCTTAAGTAAATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGCCATTGGACTTGTGTTCCTAAGTGTTATTCCTTAAGTAAATCA  150

seq1  GTTATGATGGAGAGTAAACTGTTCAAAGAGGCTGCACATCTGTATATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGATGGAGAGTAAACTGTTCAAAGAGGCTGCACATCTGTATATTCC  200

seq1  TTACAAGAAGTAAACTTAGAATTTCACACATAGAAGGGTAGTCAATGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGAAGTAAACTTAGAATTTCACACATAGAAGGGTAGTCAATGAGG  250

seq1  ATTCAGTCTGTGTCCTCAACTGTGTTCACAGTGGAAAAGGAGGCGAACGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTCTGTGTCCTCAACTGTGTTCACAGTGGAAAAGGAGGCGAACGT  300

seq1  TTAGGTATGTGAGATAAGGGTTGGTATGGGGCTGGAATGATGCCTTTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTATGTGAGATAAGGGTTGGTATGGGGCTGGAATGATGCCTTTAGC  350

seq1  TGATGAGAGCAGAGAACCCCATGGCAAGTGGCTCACACCGTTTGTGACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGAGCAGAGAACCCCATGGCAAGTGGCTCACACCGTTTGTGACTC  400

seq1  AGCTTCAGGGAAAAGATCTTACAGTCTCTTCTGGCCTCTTCAGGCAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAGGGAAAAGATCTTACAGTCTCTTCTGGCCTCTTCAGGCAGATG  450

seq1  CACCCATATCCCCAGCATATACACATGTAATTAAAAGTTAAATCTTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATATCCCCAGCATATACACATGTAATTAAAAGTTAAATCTTTTAA  500

seq1  AGAAAGTTGGAAGACCACTAATGGTGACACACACACCTTTAATCCCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTGGAAGACCACTAATGGTGACACACACACCTTTAATCCCAGCA  550

seq1  TGTGGGAGGCAGAAGCAGGCGGATCCCTGAATTTGAGGCTGGCCAGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAGGCAGAAGCAGGCGGATCCCTGAATTTGAGGCTGGCCAGAGCT  600

seq1  ACACCGTGAGACCCTGTCTTTAAAAGAAGGAAGTTGGGCCGGGCGTGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGTGAGACCCTGTCTTTAAAAGAAGGAAGTTGGGCCGGGCGTGGTG  650

seq1  GCGCACGCCTTTAATCCCAGCACTTAGGAGGCAGAGGCAGGCGAATTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACGCCTTTAATCCCAGCACTTAGGAGGCAGAGGCAGGCGAATTTCT  700

seq1  GAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGTCAGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGTCAGGGC  750

seq1  TACACAGAGAAACCCTGTCTCGAAAAAAATAAATAAATAAAAATGTATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAACCCTGTCTCGAAAAAAATAAATAAATAAAAATGTATAT  800

seq1  AAAACAACATAAACAGGTTA-TTTTGTGTAAAACTTACATAAGCTTTATA  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAACAACATAAACAGGTTATTTTTGTGTAAAACTTACATAAGCTTTATA  850

seq1  TTTCTTGGCTTTTGTTTTTTGAGGCAGAGTCTCGTTGTACAGCCCTCACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGCTTTTGTTTTTTGAGGCAGAGTCTCGTTGTACAGCCCTCACT  900

seq1  GACCTTGGAACCAGCTCTCCTGCCCAGTCTCAAGTTGTGACCACAAGTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGGAACCAGCTCTCCTGCCCAGTCTCAAGTTGTGACCACAAGTAT  950

seq1  ATACCATTA--TAGCTGGCCAAAATGATATAAAGTGTAAGGCTGAGGTGT  997
      |||||||||   ||||||||||||||||||||||||||| ||||| ||||
seq2  ATACCATTAATAAGCTGGCCAAAATGATATAAAGTGTAAAGCTGA-GTGT  999

seq1  AGCTCTGTGGTAAGTGTGC-ATGTGTGAAGCC-AGGGCCCCAAGTTTGAT  1045
      |||||||| |||||||||| |||||||||||| |||||||||||||||||
seq2  AGCTCTGT-GTAAGTGTGCAATGTGTGAAGCCAAGGGCCCCAAGTTTGAT  1048

seq1  T--ATCTATGG-ATGCCTACAAATCAGTGG-ATTG-TTTATAGA--TGGA  1088
      |   ||||||| |||||||||||||||||| |||| ||||||||   |||
seq2  TTATTCTATGGAATGCCTACAAATCAGTGGAATTGTTTTATAGAATGGGA  1098

seq1  G-TAAAAACAATAC  1101
      | ||||||| ||||
seq2  GTTAAAAACCATAC  1112

seq1: chr16_44364822_44365869
seq2: B6Ng01-302B05.g_66_1115 (reverse)

seq1  TATATATATACACAATATATGTATATGTATATATACACACACAATATATG  50
      |||||| |||| ||||||||||||||||||||||||||||||||||||||
seq2  TATATAGATACGCAATATATGTATATGTATATATACACACACAATATATG  50

seq1  TATATATATATTAGAAAATTTATATATATTATATATATAATATATATATT  100
      |||||||||| |||||| || |||||||| |||||||| |||||||||||
seq2  TATATATATA-TAGAAATTTAATATATATAATATATAT-ATATATATATT  98

seq1  AGAAATTTTAAATAGAACAATAATCAAGCCTTGT-CCATATCTTTTT--G  147
      || ||||||||||||||||||||||||||||||| ||||||||||||   
seq2  AG-AATTTTAAATAGAACAATAATCAAGCCTTGTCCCATATCTTTTTTGT  147

seq1  TTTTTTTGTACATTAAAGTCCTTCAATAGAAAGTACATAGTCAGAGGCAC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTACATTAAAGTCCTTCAATAGAAAGTACATAGTCAGAGGCAC  197

seq1  GACTGTAATGGTGTTTAGTTTAACGATCTCTCCATAAT-AAAAAACCAAC  246
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GACTGTAATGGTGTTTAGTTTAACGATCTCTCCATAATAAAAAAACCAAC  247

seq1  TTGTTTATAAATACCTAAGCATGGCTTTGTTTAATCCT-AAAAGCTATAC  295
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGTTTATAAATACCTAAGCATGGCTTTGTTTAATCCTAAAAAGCTATAC  297

seq1  TGTGTTTTTCTAAGTCATAGGTCTGTTAGTGGATTATCAGAATACTTCAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTTCTAAGTCATAGGTCTGTTAGTGGATTATCAGAATACTTCAG  347

seq1  TGGTGGAAACACCTTGAGTTTATGGCTCAAAGATTCTTATCTTTGGTATG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAAACACCTTGAGTTTATGGCTCAAAGATTCTTATCTTTGGTATG  397

seq1  TGTTTTTCAACTGTATACTTTATTTAATGGGTTATAAAATCAAGTTAGTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCAACTGTATACTTTATTTAATGGGTTATAAAATCAAGTTAGTG  447

seq1  GAGTACAACTATCACTTAAAACTAGAATGGAATAAAACTTAAATATAGTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACAACTATCACTTAAAACTAGAATGGAATAAAACTTAAATATAGTT  497

seq1  ATTCTCATGAGGCAAGGCTATATGAATTACAGTCTTACTTTTAAAAAGTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCATGAGGCAAGGCTATATGAATTACAGTCTTACTTTTAAAAAGTA  547

seq1  TGTATTTGTATGTGTGTATATATCTGATCATGTGTGTGTATTTTTGTGTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGTATGTGTGTATATATCTGATCATGTGTGTGTATTTTTGTGTG  597

seq1  TACATCTGTGTGTACCAGATCACAATGTAATATGTATTTTTTCAAGCTAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTGTGTGTACCAGATCACAATGTAATATGTATTTTTTCAAGCTAC  647

seq1  TAATATCTGTAGTAGTCTCACCTACTGTTATCTAAGTATATTGTCATTGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCTGTAGTAGTCTCACCTACTGTTATCTAAGTATATTGTCATTGG  697

seq1  AGGGTTTTAGGATGGTCATGGCCCATGGTTAAGAGGAAATTTAGCAACCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTTAGGATGGTCATGGCCCATGGTTAAGAGGAAATTTAGCAACCA  747

seq1  CAATCAATAAGGATTGAAAATTAAACTTTCAAAATGTCATGTTTGGTGCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAATAAGGATTGAAAATTAAACTTTCAAAATGTCATGTTTGGTGCC  797

seq1  TTCCCTTATTCTTTTTTCTTAGTAATTTGATAAGTAAGCGTATTTTTCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTATTCTTTTTTCTTAGTAATTTGATAAGTAAGCGTATTTTTCTC  847

seq1  TAATCAGTATTTTTCTTCACACATGTGTAGATTCTCTCTGATCAATACCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGTATTTTTCTTCACACATGTGTAGATTCTCTCTGATCAATACCT  897

seq1  GACACAGGATGTGCTGGAAAAGTCCGATCATCTGATGGCTGCAGCCAAAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGGATGTGCTGGAAAAGTCCGATCATCTGATGGCTGCAGCCAAAG  947

seq1  GTCTGTTTGCTGATGTTCCTCGTAAGCGCACAGGTAAGCGTTCAGTCCAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTGCTGATGTTCCTCGTAAGCGCACAGGTAAGCGTTCAGTCCAC  997

seq1  ACACAGCTTGCATATCTCCCGGAAACACAGCTCAGGAGAGATTAGAGGAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCTTGCATATCTCCCGGAAACACAGCTCAGGAGAGATTAGAGGAA  1047

seq1  TTC  1048
      |||
seq2  TTC  1050